BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0017.p (377 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8RE11.1 A8RE11_9FIRM Putative uncharacterized protein 247 2e-63 B0P2L6.1 B0P2L6_9CLOT Putative uncharacterized protein 210 2e-52 C1UEJ7.1 C1UEJ7_9ACTN Uncharacterized conserved protein 173 2e-41 Q4K040.1 Q4K040_STRPN Putative transferase 155 5e-36 B3Z5I2.1 B3Z5I2_BACCE Putative transferase 154 2e-35 >A8RE11.1 A8RE11_9FIRM Putative uncharacterized protein Length = 367 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 208/372 (55%), Gaps = 19/372 (5%) Query: 2 KKKMMIYAYTEFNLGDDLFIKVLCERYPDTRFLLIAPRLYKVVFKDLGNLKVYASDSVLF 61 +KK+ I AYT FN+GDDLFIK+LC+++ + F +IA + Y+ +F++ NL + S S Sbjct: 7 RKKIFISAYTCFNVGDDLFIKILCDKFSEHDFYIIANKEYRKIFREQKNLHIIDSSSAYQ 66 Query: 62 RGINYFFRKL-KLHPNFMQKFLVDQGDGTVHIGGSIFMQGEQWA---EYVANNENLRNKN 117 R +N L K H + L D V IGGSIF+Q E W E++ L+ + Sbjct: 67 RYLNKIMSLLHKEHYTIRKTIL--SCDAIVCIGGSIFIQNENWKNRFEFM-----LKEID 119 Query: 118 KPYYLMGANFGPFTDKAYYEEHRRIFKEYTDISFREQYSYDLFKDMGNVRMAPDIIFQLQ 177 KP +++G+NFGPF D +Y +FK +TDI R+ Y+Y LF D+ NVR APDI+FQ Sbjct: 120 KPKFVIGSNFGPFDDDGFYSAFHELFKCFTDICVRDDYTYSLFHDLKNVRKAPDIVFQ-- 177 Query: 178 YDQAAGKAPKGQYIAISVIK-PSSKALSGFDNLYYEKMKDVAIHFIQQGYAVHFLSFCQH 236 YD + + Q + ISVI + K L +Y EK+ V F + V SFC+ Sbjct: 178 YDMKKHISEEKQGVGISVINLRNRKGLEKVCEVYEEKIASVCEMFATKNIPVKLFSFCKF 237 Query: 237 EGDQEAIGQILGLIPAELQRETQVHFYKTDIAEILDALAGASFIVASRFHAMILGWVFGK 296 E D + I +I + + +V Y+TD+ +LD + I+ASRFHAMILGW+ Sbjct: 238 EKDNDVIEKIKDKLSDIAKENCKVILYETDLEMLLDQIGNCKMIIASRFHAMILGWIAQC 297 Query: 297 PVFPVAYSSKMINVMQDAHFHGQYTDFAHLNEVTPE---QVYESMALNSLDVTLQANQAE 353 V P+ YS KM+NV+ D F G+Y D ++ +T + ++YE+ + L + + +AE Sbjct: 298 KVLPLIYSDKMLNVINDVRFTGKYVDIKNIESLTMDDIMKIYENQPI--LRTEILSKEAE 355 Query: 354 KHFEQLDAYLSP 365 + F+ L YL+ Sbjct: 356 RQFDGLKQYLNT 367 >B0P2L6.1 B0P2L6_9CLOT Putative uncharacterized protein Length = 362 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 202/370 (54%), Gaps = 18/370 (4%) Query: 3 KKMMIYAYTEFNLGDDLFIKVLCERYPDTRFLLIAPRLYKVVFKDLGNLKVYASDSVLFR 62 KK+ +YAY NLGDDLFI+ + RYPDT + VFK+ NLK+ +S + Sbjct: 2 KKIFLYAYDHINLGDDLFIETIANRYPDTEIYFWTNAQNQKVFKEQKNLKIVDENSTKIK 61 Query: 63 GINYFFRKLKLHPNFMQKF-LVDQGDGTVHIGGSIFMQGEQWAEYVANNENLRNKNKPYY 121 +K++L + K + + D V+IGGSIFM+ W V+ E ++ P++ Sbjct: 62 ----ILKKIRLSLSARYKAGIQKKCDAQVYIGGSIFMEYPTWKNIVSWWE-YQSSQYPFF 116 Query: 122 LMGANFGPFTDKAYYEEHRRIFKEYTDISFREQYSYDLFKDMGNVRMAPDIIFQLQYDQA 181 ++GANFGP+ + Y +++ + DI FR+ YS +LF D +VR APDI+F Y Sbjct: 117 VLGANFGPYHTEEYRSAMDKVYTKLKDICFRDTYSKNLFADNDHVRQAPDILFS--YPMP 174 Query: 182 AGKAPKGQYIAISVIKPSSKAL-SGFDNL----YYEKMKDVAIHFIQQGYAVHFLSFCQH 236 + K Q I ISVI K L S F + Y EKM + F ++GY V SFC+ Sbjct: 175 KVEENKKQ-IFISVISYKDKELNSDFHQMTNEEYIEKMVQITSGFSKEGYQVILASFCRE 233 Query: 237 EGDQEAIGQILGLIPAELQRETQVHFYK-TDIAEILDALAGASFIVASRFHAMILGWVFG 295 EGD +A +I +E QR + Y T+ ++L+ ++ + +I+A+RFH ILG G Sbjct: 234 EGDLDAAQEIKN--RSEQQRNITIFDYNGTNRKQLLEEMSRSIYIIATRFHGTILGLTAG 291 Query: 296 KPVFPVAYSSKMINVMQDAHFHGQYTDFAHLNEVTPEQVYESMALN-SLDVTLQANQAEK 354 K VFP+ YS K V++D FHG+Y D + ++ E +++ +DVT AEK Sbjct: 292 KSVFPILYSDKTKYVLEDLGFHGEYADLRDPDSLSFENAKKNLESGYKIDVTESIQNAEK 351 Query: 355 HFEQLDAYLS 364 HFE+LD +L+ Sbjct: 352 HFEKLDEFLN 361 >C1UEJ7.1 C1UEJ7_9ACTN Uncharacterized conserved protein Length = 399 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 122/377 (32%), Positives = 195/377 (51%), Gaps = 29/377 (7%) Query: 10 YTEFNLGDDLFIKVLCERYPDTRFLLIAPRLYKVVFKDLGNLKVY---ASDSVLFRGINY 66 Y+ NLGDDL + L +RYP+T+F+++A R +++ NLKV SD I Sbjct: 24 YSATNLGDDLLLHALLKRYPNTQFIMLASREERILEMQYDNLKVIELGTSDCRRLGAIGR 83 Query: 67 FFRKLKLHPNFMQKFLVDQGDGTVHIGGSIFMQ--GEQWAEYVANNENLRNKNKPY---- 120 F R +L ++ + V IGGSIF+Q +++ ++++ + Y Sbjct: 84 FARARRLLRERET--VLSKQKCLVVIGGSIFIQPSASTIRGLISSVCAVKDRARLYGASM 141 Query: 121 --YLMGANFGPFTDKAYYEEHRRIFKEYTDISFREQYSYDLFKDMGNVRMAPDIIFQLQY 178 +++GANFGP+ + + IF D+ FR+Q S LF D+ NVR APDI+F + Sbjct: 142 NTFILGANFGPYRSNRFLKGFHDIFSRCNDVCFRDQKSSGLFSDLKNVRFAPDILFATPF 201 Query: 179 DQAAGKAPKGQYIAISVI----KPSSKALSGFDNLYYEKMKDVAIHFIQQGYAVHFLSFC 234 PK + +SVI K +++L+ + + Y + + + F + GY V SFC Sbjct: 202 LD----GPKQKQALLSVIDLKTKGQTESLASYASAYETWIANASHWFAKNGYRVVVSSFC 257 Query: 235 QHEGDQEAIGQILGLIPAELQRETQVHFYKTDIAEILDALAGASFIVASRFHAMILGWVF 294 + EGD+ A+ ++ + +L +V Y+ D A +LD ++ + +VA+RFHAM+LG Sbjct: 258 KAEGDENAVERVAEKVN-QLGSSIEVLLYRGDAAPVLDEISKSEVVVATRFHAMVLGLAS 316 Query: 295 GKPVFPVAYSSKMINVMQDAHF-HGQYTDFAHLN--EVTP-EQVYESMALNSLDVTLQAN 350 G V V YS K VM D F G D A ++ ++TP E++ ES L V+ A Sbjct: 317 GAKVLSVPYSKKAAYVMADIGFDRGNVLDIASIDPADMTPCERILES---EPLCVSTFAK 373 Query: 351 QAEKHFEQLDAYLSPAP 367 +A +HF LD YL +P Sbjct: 374 EALRHFRALDDYLLKSP 390 >Q4K040.1 Q4K040_STRPN Putative transferase Length = 369 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 119/379 (31%), Positives = 191/379 (50%), Gaps = 34/379 (8%) Query: 4 KMMIYAYTEFNLGDDLFIKVLCERYPDTRFLLIAPRLYKVVFKDLGNLKVYASDSVLFRG 63 ++ + + NLGDDLF+ +L +RYP+ F +I Y VF+D N+ V+ + RG Sbjct: 2 EIFVRGFFHVNLGDDLFLYILAKRYPNHNFHVILNEEYTKVFRDEKNIIVHPYKKIR-RG 60 Query: 64 INYFFRKLKLHPNFMQKFLVD---QGDGTVHIGGSIFMQGEQWAEYVANNENLRNKN-KP 119 ++ F N + + V+ + V IGGSIF E + VA R P Sbjct: 61 LDRFL------INCNKDYYVEIEKKCQLNVVIGGSIFQ--ENVDDVVARERLARMPQLNP 112 Query: 120 YYLMGANFGPFTDKAYYEEHRRIFKEY----TDISFREQYSYDLFKDMGNVRMAPDIIFQ 175 Y++GANFGP+ EE+R + K+Y D+ FR+++S F ++ VR APDI+F Sbjct: 113 TYILGANFGPYVT----EEYRLLVKDYLTKSEDVCFRDEWSKQKFPELTKVRFAPDIVFG 168 Query: 176 LQYDQAAGKAPKGQYIAISVIKPSSKA--LSGFDNLYYEKMKDVAIHFIQQGYAVHFLSF 233 +Q K + I +SV+ KA + + Y + ++ +QGY + SF Sbjct: 169 IQ-SIIPKVNEKKKRIFVSVVDCFKKAGGIKKYAPNYEAFILRCINYYNEQGYEIILSSF 227 Query: 234 CQHEGDQEAIGQILGLIPAELQRETQVHFYK-TDIAEILDALAGASFIVASRFHAMILGW 292 C+ EGD+E I +IL +P++ Q E + Y + E++ A+ + I+ASRFH+MILG Sbjct: 228 CKMEGDKEVIDRILEKLPSDKQSEISILNYNGENWREVVAAIQQSEKIIASRFHSMILGM 287 Query: 293 VFGKPVFPVAYSSKMINVMQD---AHFHGQYTDFAHLNEVTPEQVYESMALNSLDVTLQA 349 VFG V P+AY+ K + + +H+ +D H P+ + + + D+ QA Sbjct: 288 VFGVSVLPIAYNKKFKQFLANFDLSHYCISVSDIDHQ---VPKNLNYLLFDGNTDIAEQA 344 Query: 350 NQAEKHFEQLDAYLSPAPL 368 N+ HF +LD L L Sbjct: 345 NE---HFMKLDERLMRGTL 360 >B3Z5I2.1 B3Z5I2_BACCE Putative transferase Length = 373 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/373 (27%), Positives = 185/373 (49%), Gaps = 13/373 (3%) Query: 3 KKMMIYAYTEFNLGDDLFIKVLCERYPDTRFLL-IAPRLYKVVFKDLGNLKVYASDSVLF 61 KK+ + Y FN GDDLF+ +L ++YPD F + Y N+ + Sbjct: 2 KKVFVDIYLMFNFGDDLFLDILVKKYPDCYFTVNYLGSNYDQFIAQYNNVSRRK-----Y 56 Query: 62 RGINYFFRKLKLHPNFMQ-KFLVDQGDGTVHIGGSIFMQ----GEQWAEYVANNENLRNK 116 +N ++LKL N + + ++ D + IGGSIF + + + + + + Sbjct: 57 TLLNKIGQRLKLSDNITNYEKIAEEHDALLFIGGSIFREEAYHSSLYRDRMKMVMEFKKR 116 Query: 117 NKPYYLMGANFGPFTDKAYYEEHRRIFKEYTDISFREQYSYDLFKDMGNVRMAPDIIFQL 176 K +++GANFGPF + + +++R+ F D+ FR+ YSY LF+D+ VR A DI+FQ+ Sbjct: 117 KKLVFILGANFGPFKTEEFLDDYRKFFALCDDVCFRDVYSYQLFEDLPQVRCASDIVFQM 176 Query: 177 QYDQAAGKAPKGQYIAISVIKPSSK-ALSGFDNLYYEKMKDVAIHFIQQGYAVHFLSFCQ 235 D+ + + I S+I K L+ + N Y + +G + +SFC+ Sbjct: 177 NTDEFRLDLSE-ERIGFSIIDVRHKQGLAHYYNDYIRSTIKAIELLVNKGNKCYLMSFCE 235 Query: 236 HEGDQEAIGQILGLIPAELQRETQVHFYKTDIAEILDALAGASFIVASRFHAMILGWVFG 295 EGD + I I + + + ++ YK ++ E ++ +A ++A+RFHA IL + G Sbjct: 236 QEGDLDVIHTIQSRLSSNILENIVIYKYKGNLKEAIEMMASFKLLIAARFHANILALLLG 295 Query: 296 KPVFPVAYSSKMINVMQDAHFHGQYTDFAHLNEVTPEQVYESMALNSLDVTLQANQAEKH 355 + P+ YS K N+++D F+G D +L E++ ++ ++ ++A+K Sbjct: 296 IGIIPIIYSQKTSNILKDIDFNGTLIDMENLQLQYDEKLIDASINYKFNLETTLSKAKKQ 355 Query: 356 FEQLDAYLSPAPL 368 FE+LD +L + Sbjct: 356 FEKLDDFLGIGAV 368 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,286,110,721 Number of extensions: 98226978 Number of successful extensions: 202635 Number of sequences better than 1.0e-05: 102 Number of HSP's gapped: 202600 Number of HSP's successfully gapped: 102 Length of query: 377 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 240 Effective length of database: 1,770,017,148 Effective search space: 424804115520 Effective search space used: 424804115520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)