BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0015.p (311 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3XGJ6.1 A3XGJ6_9FLAO Glycosyl transferase 75 1e-11 A3J0I5.1 A3J0I5_9FLAO Glycosyl transferase 74 2e-11 C0U0S8.1 C0U0S8_9ACTO Predicted glycosyltransferase 63 3e-08 Q26F69.1 Q26F69_9BACT Putative uncharacterized protein 63 3e-08 A3HRI5.1 A3HRI5_9SPHI Glycosyl transferase, family 2 60 3e-07 >A3XGJ6.1 A3XGJ6_9FLAO Glycosyl transferase Length = 331 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 115/300 (38%), Gaps = 35/300 (11%) Query: 11 MQGLSVVICTRNRVQDLTRCIHSITKQDIGRTSPIEVIIIDDGDIPKEILSEFETLL--- 67 M S++ICT R Q L + S+ KQ R P E+++ID I ++ E +L Sbjct: 1 MPIFSLIICTYQRSQALVTLLKSVQKQ---RLYPDEILVIDG-----SIDNQTENVLIKE 52 Query: 68 TACGYSFIYHSKTDRGLWLSRIKAVE-LSTMDKIL-FLDDDVEIPGHYLSTLIQTYLDYP 125 + K DRGL L R +E L+ +I+ FLDDDV + Y ++ T+ + P Sbjct: 53 VIKNLKYFKVEKQDRGLTLQRNFGIEKLNPKSEIVCFLDDDVVLEPDYFEQILHTFHEKP 112 Query: 126 NCAGVGGIAIGMSN-------------SFLGTIRCXXXXXXXXXXXXXXXXXXXXXMYNW 172 N GVGG I F G R M N+ Sbjct: 113 NAVGVGGYIINEVAWESDQNEPRASWFGFDGYQRKEGSRFQLRALFGLQPDAAPGFMPNF 172 Query: 173 HKAR---------KIFKTEFQHGCNMSFKKEAIKDLGPVPWLKSYSVGEDILMSRIAQKS 223 R K + E G +++K + L + + Y + ED S A K Sbjct: 173 GHGRSISFLPPSGKTYPVEQLMGGVAAYRKSLFEKLSFSSYFEGYGLYEDADFSLRASKL 232 Query: 224 GPLYINPELKLLHHESPASRDNLEDVAYTRVLNHVYLLKDKKSGPIGYLALVWTTLYLIL 283 G L+IN +L H+ P+ R +L + N Y+ + K P W L+L Sbjct: 233 GSLWINTRAQLSHYHDPSGRPDLYKYGKMVIRNGWYVWRVKYPNPNLKARFKWNATALLL 292 >A3J0I5.1 A3J0I5_9FLAO Glycosyl transferase Length = 330 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 77/324 (23%), Positives = 123/324 (37%), Gaps = 39/324 (12%) Query: 14 LSVVICTRNRVQDLTRCIHSITKQDIGRTSPIEVIIIDDGDIPKEILSEFETLLTACGYS 73 +++ICT R Q L + + S+ Q + P E++I+D P + E T + G Sbjct: 3 FTLIICTFKRSQPLLKLLLSVQHQTL---YPNEILIVDGS--PDDFTKEMLTKNSFQGLK 57 Query: 74 FIYHSKTDRGLWLSR---IKAVELSTMDKILFLDDDVEIPGHYLSTLIQTYLDYPNCAGV 130 + +TDRGL R I V+ ++ + + FLDDD + +Y +I+TY +P GV Sbjct: 58 YFKVDETDRGLTKQRNYGITRVQEAS-EIVCFLDDDTVLESNYFEEIIKTYTLFPEALGV 116 Query: 131 GGIAIGMSNSFLGTIRCXXXXXXXXXXXXXXXXXXXXXMYNWHK---------------- 174 GG +SN T + W K Sbjct: 117 GGY---ISNEIHWTKVTLDYQPKINEFYYDGWKRKDGSRFVWRKKLGLDSNRPPGCLPEF 173 Query: 175 -----------ARKIFKTEFQHGCNMSFKKEAIKDLGPVPWLKSYSVGEDILMSRIAQKS 223 + KI+K E G SF+K ++ + + Y + ED + K Sbjct: 174 SHGRSIGFLPPSGKIYKVEQLMGGVSSFRKTVFQEFQFSTYFEGYGLYEDADFTLRLSKV 233 Query: 224 GPLYINPELKLLHHESPASRDNLEDVAYTRVLNHVYLLKDKKSGPIGYLALVWTTLYLIL 283 G LYIN +L H+ + R N D V N Y+ + K P + W + ++L Sbjct: 234 GKLYINTNAQLGHYHDASGRPNKYDYGKMVVRNGYYVWRVKYPNPSFKAKVKWHLITILL 293 Query: 284 REQPKKNVAAIKGYKKGLKEIFSR 307 N + K+ L E R Sbjct: 294 TAIRFTNGFTMSKRKEVLTETLGR 317 >C0U0S8.1 C0U0S8_9ACTO Predicted glycosyltransferase Length = 443 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 15/123 (12%) Query: 14 LSVVICTRNRVQDLTRCIHSITKQDIGRTSPIEVIIIDD---GDIPKEILSEFETLLTAC 70 L+V +CTR+R DL RC+HS+ Q + +EV+++D+ GD + ++ E Sbjct: 116 LTVAVCTRDRPTDLARCLHSLRNQTVD----VEVLVVDNDPGGDGARLVVEEHP------ 165 Query: 71 GYSFIYHSKTDRGLWLSRIKAVELSTMDKILFLDDDVEIPGHYLSTLIQTYLDYPNCAGV 130 G ++ + RG +R +A+ ++ I F+DDDV+ + L+ T+ +P V Sbjct: 166 GVRYVREPR--RGTAWARNRALVEASTTLIAFVDDDVQAHPRWAEALLMTFDAHPEAGAV 223 Query: 131 GGI 133 G+ Sbjct: 224 TGL 226 >Q26F69.1 Q26F69_9BACT Putative uncharacterized protein Length = 330 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 79/322 (24%), Positives = 109/322 (33%), Gaps = 35/322 (10%) Query: 14 LSVVICTRNRVQDLTRCIHSITKQDIGRTSPIEVIIIDDGDIPKEILSEFETLLTACGYS 73 LS++ICT R + LTR + S+ Q P EV+IID G + S F Sbjct: 3 LSLIICTYMRPEPLTRLMESVMVQT---QVPDEVLIID-GSTDDDTGSRFRESENNI--- 55 Query: 74 FIYHS--KTDRGLWLSRIKAVEL--STMDKILFLDDDVEIPGHYLSTLIQTYLDYPNCAG 129 YH RGL R +E MD + FLDDD + Y L+ TY YP G Sbjct: 56 LKYHKVPPDHRGLTKQRNYGIERVQGDMDIVAFLDDDTILNSDYFENLVSTYAQYPKAVG 115 Query: 130 VGGI---AIGMSNS------------FLGTIRCXXXXXXXXXXXXXXXXXXXXXMYNWHK 174 VGG + S + G R + Sbjct: 116 VGGYITNEVSWEESSKENPADLNYYYYDGYRRVESSRYKLRRKLGLAQMTQPAVYPEFGH 175 Query: 175 ARKI---------FKTEFQHGCNMSFKKEAIKDLGPVPWLKSYSVGEDILMSRIAQKSGP 225 R I +K E G SF +K+ + + Y + ED + G Sbjct: 176 GRSISFLPPSGKIYKVEQLMGGVSSFPLAVLKEHKFSEYFEGYGLYEDADFTLRLSNIGD 235 Query: 226 LYINPELKLLHHESPASRDNLEDVAYTRVLNHVYLLKDKKSGPIGYLALVWTTLYLILRE 285 LY+N +L HH A R N V N Y+ + K P + W + +L Sbjct: 236 LYVNTAAQLEHHHDAAGRPNKYRYGKMVVRNGWYVWRVKHPNPSFKNKMKWYQITALLTS 295 Query: 286 QPKKNVAAIKGYKKGLKEIFSR 307 N+ K+ E R Sbjct: 296 IRFLNIFTTSERKEAFTEAMGR 317 >A3HRI5.1 A3HRI5_9SPHI Glycosyl transferase, family 2 Length = 335 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 10/134 (7%) Query: 11 MQGLSVVICTRNRVQDLTRCIHSITKQDIGRTSPIEVIIIDDGD---IPKEILSEFETLL 67 ++G+S+++CT N L + S TK + PIE+I+ID+G + + +E L Sbjct: 2 IEGVSIIVCTHNGKNRLEPTLSSFTK--LKSRFPIELILIDNGSSDGVGNWVKEWWEINL 59 Query: 68 TACGYSFIYHSKTDRGLWLSRIKAVELSTMDKILFLDDDVEIPGHYLSTLIQTYLDYPNC 127 + + GL +RIK ++ S+ D +LF DDD E+ YL I +L+ P Sbjct: 60 VKVPIKVF--QEQNPGLMNARIKGIQESSFDFLLFCDDDNELSFDYLEIGINLFLNNPKV 117 Query: 128 AGVGG---IAIGMS 138 +GG I IG S Sbjct: 118 GVIGGYGEIPIGYS 131 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,702,420,851 Number of extensions: 65455704 Number of successful extensions: 137141 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 137239 Number of HSP's successfully gapped: 11 Length of query: 311 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 176 Effective length of database: 1,788,859,178 Effective search space: 314839215328 Effective search space used: 314839215328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)