BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0013.p (709 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7BSN2.1 A7BSN2_9GAMM VCBS 98 2e-18 A0L6L9.1 A0L6L9_MAGSM Putative outer membrane adhesin like proteiin 92 1e-16 Q3B5X6.1 Q3B5X6_PELLD VCBS 76 1e-11 A4SD87.1 A4SD87_PROVI Putative outer membrane adhesin like protein 75 2e-11 C3ZRA8.1 C3ZRA8_BRAFL Putative uncharacterized protein 72 2e-10 >A7BSN2.1 A7BSN2_9GAMM VCBS Length = 704 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 16/232 (6%) Query: 159 VNDAPYISELSGSTYLDFDGVG-YVTIPDLNIYSN-SLTIETWVNASSAPTWARIFDTSY 216 V+DAP + + L+ DG G Y+T+PD + N LTIE+WV S W+RI D Sbjct: 258 VSDAPLTDLPAPGSALELDGSGDYITLPDDKTWFNGDLTIESWVYPHSYANWSRILDIGQ 317 Query: 217 GPDNFNLHLTFEGST-GRLALEALPQKGPRVKSYLVRTTEQLPLNQWVHVAAVYNAVEKK 275 G ++N+ L T G+ + G R + + L ++ W H+A + Sbjct: 318 GSGDYNVVLALTNETSGKPSFRVFDDNGNRNP---LESNTALTISTWNHIAVTLSGTTAT 374 Query: 276 AYIYWNGILKGSGFMDLTDMAKGSAANSNIQRPYNYIGESTWSQDANYVGGMRDYRIWNK 335 YI NG GS S S++ R YIG S WS DA+ + RIW+ Sbjct: 375 MYI--NGAESGS--------ITNSYIPSDVTRDKAYIGHSNWSNDADANAVFDEMRIWDV 424 Query: 336 AKTQAEIESQMNTSLTGTETNLMVNYKFNNPDDGAVAKDSSAGQRNGNIISG 387 A++QAEI++ MN ++ G E+ L+ Y F+ ++A S N ++G Sbjct: 425 ARSQAEIQAYMNRTMDGNESGLIAYYNFDEKAASSIAVLSDIAGNNLGTLNG 476 >A0L6L9.1 A0L6L9_MAGSM Putative outer membrane adhesin like proteiin Length = 11716 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 155/353 (43%), Gaps = 53/353 (15%) Query: 38 FDTVMEDTLEPA-GQSVSVINSN----------GIGITEVDNTNGQWQYSAG-GNFWLSI 85 D V ED+ P G VS + S+ GI +T VD ++GQWQYS G W I Sbjct: 7548 IDDVQEDSTVPQNGTMVSNLLSDIYYDVDGTLSGIALTSVDESHGQWQYSWDYGATWQGI 7607 Query: 86 VAPDPGKIAVFGRDVMIRFVPKKDWNGTAQIRYRGWLSSGEQSSNYV---NVNAEYTGDA 142 + + IRF+P D+ G++ +RGW + S N V +V+A G Sbjct: 7608 DGLSESQALLLESSDSIRFIPNADYAGSSTFTFRGW----DTSDNGVAGTSVDATQNGGT 7663 Query: 143 ESYSESVQAAQIVVTPVNDAPYISELSGSTYLDFDGVGYVTIPDLNI-YSNSLTIETWVN 201 ++S Q+ V VND +S ++ S L FDGV V +++ S+S T+E WV Sbjct: 7664 TAFSAVSHTGQVNVIEVNDPSQLSAVAPSQVLSFDGVDDVASAAISLPPSSSFTLEAWVY 7723 Query: 202 ASSAPTWARIFDTSY-GPDNFNLHLTFEGSTGRLALEALPQKGPRVKSYLVRTTEQLPLN 260 +S + IF G F++ F+ S G+L + V + + + LN Sbjct: 7724 RNSGSSDDTIFSQGVEGTGTFSVG--FDAS-GQLNWN-IDSDTLSVNTADIDSNNVGMLN 7779 Query: 261 QWVHVAAVYNAVEKKAY--IYWNGILKGSGFMDLTDMAKGSAANSNIQRPYNYIGESTWS 318 QW HVAAVY+ + +Y +GI +A+ + S Y+G +T Sbjct: 7780 QWYHVAAVYDDMGGSPVRTLYVDGI----------QVAQSTTGPS-------YVGGNTLV 7822 Query: 319 QDANYVGG--------MRDYRIWNKAKTQAEIESQMNTSLTGTETNLMVNYKF 363 + GG + D RIW+ A+T EI N +T T TNL + F Sbjct: 7823 LGSYLAGGSGQDFDGKLDDVRIWSDARTAQEIAESANGVITET-TNLTTYFDF 7874 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 90/323 (27%), Positives = 134/323 (41%), Gaps = 47/323 (14%) Query: 79 GNFWLSIVAPDPGKIAVFGRDVMIRFVPKKDWNGTAQIRYRGWLSSGEQSSNYVN----V 134 G WL I A G + V + + K + Y +SGE SNY + V Sbjct: 10199 GTLWLDINAN--GSLDVGTEEAFAGSIVTKAQLDAGLLHYTP--NSGESGSNYTSFSYYV 10254 Query: 135 NAEYTGDAESYSESVQAAQIVVTPVNDAP--YISELSGSTYLDFDGVGYVTIPDLNIYSN 192 N T A + + +V AP Y + G+ +T+ +NI ++ Sbjct: 10255 NDGTTNSAIANTITVDITTGSTGTTGSAPVVYTAAHQGAMQFSTGEADTLTVTGVNIANS 10314 Query: 193 SLTIETWVNASSAPT-WARIFDTS------------YGPDNFNLHLTF-EGSTGRLALEA 238 S T+E WVN S++ + W +F +GP+N LT G+TGR++ + Sbjct: 10315 SYTLEAWVNRSTSTSHWDMLFTQGTTTTDGQYQFFGFGPNN---DLTMGHGATGRISADI 10371 Query: 239 LPQKGPRVKSYLVRTTEQLPLNQWVHVAAVYNAVEKKAYIYWNGILKGSGFMDLTDMAKG 298 +G S LV +W HVAA Y+ + IY NG+L+ SG + Sbjct: 10372 SNFEG---TSNLV--------GEWYHVAASYDVTSGEGNIYINGVLQASGILGF------ 10414 Query: 299 SAANSNIQRPYNYIGESTWSQDANYVGGMRD-YRIWNKAKTQAEIESQMNTSLTGTETNL 357 A +N P IG STW+ + + G+ D RIW+ +T EI N + E NL Sbjct: 10415 --AFTNAADPDMSIGNSTWAAGIDGLDGLLDQVRIWSDVRTAQEIAESYNQAWGSNEENL 10472 Query: 358 MVNYKFNNPDDGAVAKDSSAGQR 380 + NY FN D V S+ G Sbjct: 10473 LANYDFNIVADNTVFDSSNNGNH 10495 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 103/216 (47%), Gaps = 22/216 (10%) Query: 154 IVVTPVNDAPYISELSGSTYLDFDGVGYVTIPDLNIY-SNSLTIETWVNASSAPTWARIF 212 + + PV+DAP +S + S L FDGV + L + S S T+E WV +S+ + IF Sbjct: 9158 LAIAPVDDAPALSAVQPSQVLSFDGVDDMASATLALAPSTSFTLEGWVYRNSSDSSDAIF 9217 Query: 213 DTSYGPDNFNLHLTFEGSTGRLALEALPQKGPRVKSYLVRTTEQLPLNQWVHVAAV--YN 270 S G + + +TG L+ + V + + + +NQW HVAAV YN Sbjct: 9218 --SQGFEGTGTFVVGFDATGHLSWN-IDSDTLSVNTADIDSNNVGMVNQWYHVAAVYDYN 9274 Query: 271 AVEKKAYIYWNGILKGSGFMDLTDMAKGSAANSNIQRPYNYIGE---STWSQDANYVGGM 327 A +Y +G+ +A+ +A NS IG S+ QD + G + Sbjct: 9275 AGAPVRTLYVDGV----------QVAQSTAGNSYAGGSTLVIGNYLASSSGQD--FDGKL 9322 Query: 328 RDYRIWNKAKTQAEIESQMNTSLTGTETNLMVNYKF 363 D RIW+ ++ AEI++ N +++ T TNLM Y F Sbjct: 9323 DDVRIWSDVRSAAEIQNSANGAVSDT-TNLMAYYTF 9357 >Q3B5X6.1 Q3B5X6_PELLD VCBS Length = 6678 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 30/244 (12%) Query: 145 YSESVQAAQ-IVVTPVNDAPYISELSGSTYLDFDGVG-YVTIPDLNI-YSNSLTIETWVN 201 +S + A Q + V +NDAP ++ L FDG Y PD++ S + T+ETWV Sbjct: 2956 HSAATSATQAVTVAALNDAPKVTN-EADPALVFDGTDDYALFPDIDANISTAFTLETWVK 3014 Query: 202 ASSAPTWARIFDTSYGPDNFNLHLTFEGSTGRLALEALPQKGPRVKSYLVRTTEQLPLNQ 261 F + G + LH T AL +P G + + V L ++ Sbjct: 3015 FDDLD--GVQFISGKGTEQMELH------TSGSALRFIPTNGAYIDTGSV-----LVVDT 3061 Query: 262 WVHVAAVYNAVEKKAYIYWNGILKGSGFMDLTDMAKGSAANSNIQRPYN--YIGESTWSQ 319 W H+AA Y+A A+IY NG+ +++ + +AA+S + Y+G + Sbjct: 3062 WTHIAATYDAGADTAHIYINGV-------EVSAVDNNAAADSALLATETGYYLGRR--AD 3112 Query: 320 DANYV-GGMRDYRIWNKAKTQAEIESQMNTSLTGTETNLMVNYKFNNPDDGAVAKDSSAG 378 + Y+ G + D+RIWN +T EI + MN L G+E L+ + + G D+++ Sbjct: 3113 NTYYLNGSIADFRIWNDVRTADEIRNNMNAELQGSEAGLVALWNLDEG-SGTTLADATSS 3171 Query: 379 QRNG 382 + NG Sbjct: 3172 RFNG 3175 >A4SD87.1 A4SD87_PROVI Putative outer membrane adhesin like protein Length = 6112 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 30/246 (12%) Query: 143 ESYSESVQAAQ-IVVTPVNDAPYISELSGSTYLDFDGVG-YVTIPDLNI-YSNSLTIETW 199 + +S + A Q + V +NDAP ++ L FDG Y PD++ S + T+ETW Sbjct: 3207 DMHSAATSATQAVTVAALNDAPKVTN-EADPALVFDGTDDYALFPDIDANISTAFTLETW 3265 Query: 200 VNASSAPTWARIFDTSYGPDNFNLHLTFEGSTGRLALEALPQKGPRVKSYLVRTTEQLPL 259 V F + G + LH T AL +P G + + V L + Sbjct: 3266 VKFDDLD--GVQFISGKGTEQMELH------TSGSALRFIPTNGAYIDTGSV-----LVV 3312 Query: 260 NQWVHVAAVYNAVEKKAYIYWNGILKGSGFMDLTDMAKGSAANSNIQRPYN--YIGESTW 317 + W H+AA Y+A A+IY NG+ +++ + +AA+S + Y+G + Sbjct: 3313 DTWTHIAATYDAGADTAHIYINGV-------EVSAVDTNAAADSALLATETGYYLG--SR 3363 Query: 318 SQDANYV-GGMRDYRIWNKAKTQAEIESQMNTSLTGTETNLMVNYKFNNPDDGAVAKDSS 376 + + Y+ G + D+RIWN +T EI MN L G+E L+ + + G D++ Sbjct: 3364 AHNTYYLNGSIADFRIWNDVRTADEIRINMNAELQGSEAGLVALWNLDEG-SGTTLADAT 3422 Query: 377 AGQRNG 382 + + NG Sbjct: 3423 SSRFNG 3428 >C3ZRA8.1 C3ZRA8_BRAFL Putative uncharacterized protein Length = 4411 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 27/160 (16%) Query: 30 AQAQTSGPFDTVMEDTLEPAGQSVSVINSN---------------GIGITEVDNTNGQWQ 74 +Q T P D ED +PAG +++V+ SN GI +T D++NG W+ Sbjct: 1343 SQVVTFTPID---EDVTDPAGDAITVLLSNCDDVDLTWPGTQQNIGIAVTGADSSNGAWE 1399 Query: 75 YSA-GGNFWLSIVAPDPGKIAVFGRD-----VMIRFVPKKDWNGTAQIRYRGW-LSSGEQ 127 YS G W + A + G D +RF+P+ D++GTA + YR W ++G Sbjct: 1400 YSTDNGTAWSQLGAVSGSSAVLLGEDGDGGRYRLRFLPEPDFSGTAFLYYRAWDFTTG-- 1457 Query: 128 SSNYVNVNAEYTGDAESYSESVQAAQIVVTPVNDAPYISE 167 ++ V+A YT ++S+S A I V P ND+P +++ Sbjct: 1458 TAGDTGVSATYTSPTGAFSQSEAIASITVLPSNDSPLVTD 1497 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.130 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,028,122,576 Number of extensions: 165138221 Number of successful extensions: 296635 Number of sequences better than 1.0e-05: 57 Number of HSP's gapped: 296669 Number of HSP's successfully gapped: 81 Length of query: 709 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 566 Effective length of database: 1,713,491,058 Effective search space: 969835938828 Effective search space used: 969835938828 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 135 (56.6 bits)