BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0011.p (462 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HUA8.1 B1HUA8_LYSSC Cell surface glycoprotein 2 (S-layer prote... 315 8e-84 B1DIS9.1 B1DIS9_9BACL S-layer domain protein 288 8e-76 B1D7B9.1 B1D7B9_9BACL S-layer domain protein 281 8e-74 B1DBB3.1 B1DBB3_9BACL S-layer domain protein 219 6e-55 Q250G1.1 Q250G1_DESHY Putative uncharacterized protein 167 2e-39 >B1HUA8.1 B1HUA8_LYSSC Cell surface glycoprotein 2 (S-layer protein 2) Length = 1549 Score = 315 bits (806), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 166/438 (37%), Positives = 250/438 (57%), Gaps = 12/438 (2%) Query: 25 IQRTKDSGGILHDVVNFTMDRVDEVVRKITGTLDNTARIMIPDEKDQVADINVNVPKDAI 84 I+RTK + G + D V T + K +N RI++PD D++ + V VPK ++ Sbjct: 1124 IERTKHANGEITDFVALTESSAKAAIEKAKQIDNNIVRIVLPDVNDEIDKVTVEVPKQSL 1183 Query: 85 KTLGDSNVNLEIFTDNVRILIAQSSLDTFTEDLFFHVVPIKDQSLRKXXXXXXXXXXXXX 144 + L ++ ++LEI T+N + I SS+ ++ +F +VP+K S R+ Sbjct: 1184 QLLRENGLSLEIATENGLVTIPHSSMKGIEDNFYFRLVPVKKNSERQAIEERARVERVVH 1243 Query: 145 XXXXXKQIDVVARPMTIETNMQSRPVTITLPLRDVQLPATLPEREDFLSNLVIFIEHSDG 204 + VVARPMTIETNM +RPV +TLPL+ V++P + ER+ FL L +FIEHSDG Sbjct: 1244 EALESNNVHVVARPMTIETNMPNRPVHVTLPLKGVKIPVNIVERKAFLKQLAMFIEHSDG 1303 Query: 205 DKELKKAKIVDYKPGELGLQFNVDKFSTFTILNMEGWEQYLAATEXXXXXXXXXXXXKAF 264 +K++ ++V GELGL+F V+KFSTFTI+ + + L + +A+ Sbjct: 1304 EKKVVLPEVVTMVKGELGLRFTVEKFSTFTIIQVNRTKPPLEVNK-----------HEAY 1352 Query: 265 ITGYSDGTFKPNHSITRAEMAAILARNLGYDASAAPAVSSYPDVRDSHWAKGAIEFVKEA 324 I G+ DGTF P ++TR ++A ++AR LGY + D+ ++A G I F+KE Sbjct: 1353 INGFLDGTFGPEKNVTRGQVATMIARILGYTDGTVDTTPLFRDIPSDYYAAGPIAFIKER 1412 Query: 325 GLMQGNEKGRFLPDAPISRGEMAAIASRYKKLDTTAATSGGGFKDAAGHWAAKDIEAASK 384 G+M G+ G F I+R EMA + + +K+L FKD GHWA IEA Sbjct: 1413 GIMNGDIYGNFRASDNITRAEMATVVANFKQLH-IEENQNITFKDTKGHWAQWIIEAIRT 1471 Query: 385 AGIINGYEDGTYRPGGNLTRAEAVKVVNRLFGRGPLYGAATPSWPDEPATNWAYNEIEEA 444 AGIING DG++ P +TRA+A+ ++NR+ RGPL G +PS+ D T+WA+ EIEEA Sbjct: 1472 AGIINGQSDGSFAPNEPVTRAQAIVMMNRMLERGPLQGVTSPSFQDVKETHWAFEEIEEA 1531 Query: 445 SIDHTFTVRNEGGETLSQ 462 + HT+ + +G E LS+ Sbjct: 1532 AKTHTYVIDQDGNEKLSK 1549 >B1DIS9.1 B1DIS9_9BACL S-layer domain protein Length = 761 Score = 288 bits (737), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 178/448 (39%), Positives = 246/448 (54%), Gaps = 32/448 (7%) Query: 15 GLGSVLAETVIQRTKDSGGILHDVVNFTMDRVDEVVRKITGTLDNTARIMIPDEKDQVAD 74 G +V A+ I+RT S G D V T + + I A IMIPD KD+V++ Sbjct: 340 GSDAVAAKAEIERTTKSDGTKSDKVVLTSAQAKTAIAAIAANKLGAANIMIPDAKDEVSE 399 Query: 75 INVNVPKDAIKTLGDSNVNLEIFTDNVRILIAQSSLDTFTEDLFFHVVPIKDQSLRKXXX 134 +NV VPK+A L D+ + L I TDNV++++ SSL+ F +D+ F VPIK + K Sbjct: 400 VNVTVPKEAKGLLADAKLGLGIVTDNVQLIVPSSSLEGFADDVHFRFVPIK-KDEEKKEI 458 Query: 135 XXXXXXXXXXXXXXXKQIDVVARPMTIETNMQSRPVTITLPLRDVQLPATLPEREDFLSN 194 + V+ RPMTIETN+Q+R VT+ +PL++ +P +D L Sbjct: 459 KARADKDTIVQAIASDGVTVIGRPMTIETNLQNREVTLIMPLKE------MPLSKDELEG 512 Query: 195 LVIFIEHSDGDKELKKAKIVDY--KPGELGLQFNVDKFSTFTILNMEGWEQYLAATEXXX 252 L ++IEH DG +EL + K+V Y G G+QF V KFSTFT++ + Sbjct: 513 LRVYIEHGDGTRELLQGKLVPYPGADGVQGIQFTVTKFSTFTLVYAK------------- 559 Query: 253 XXXXXXXXXKAFITGYSDGTFKPNHSITRAEMAAILARNLGYDASAAPAVSSYPDVRDSH 312 A++ GY DG F+P +ITRAEMAA+L+R + D + A +Y DV SH Sbjct: 560 ---PKLEEHHAYVNGYQDGKFRPEQTITRAEMAAMLSRVITKDVNEDAA--TYADVPTSH 614 Query: 313 WAKGAIEFVKEAGLMQGNEKGRFLPDAPISRGEMAAIASRYKKLDTTAATSGGGFKDAAG 372 WA AI V +M G RF P+ PI+R E+AAIA+ LD SG GFKD AG Sbjct: 615 WAAPAIAKVSAMQVMSGYPNNRFGPEKPITRAELAAIAA---GLDAE-GISGSGFKDIAG 670 Query: 373 HWAAKDIEAASKAGIINGYEDGTYRPGGNLTRAEAVKVVNRLFGRGPLYGAATPS-WPDE 431 HWA I A AG++ GY DG+++P +TRAEAV V+NR+ GRGP S W D Sbjct: 671 HWAENSIRKAQGAGLLQGYPDGSFKPEKTVTRAEAVTVLNRVLGRGPAAATDKESPWRDV 730 Query: 432 PATNWAYNEIEEASIDHTFTVRNEGGET 459 WAY +I EAS++H+FT + +G E+ Sbjct: 731 AVDYWAYADIAEASVEHSFTHQADGTES 758 >B1D7B9.1 B1D7B9_9BACL S-layer domain protein Length = 2909 Score = 281 bits (720), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 162/433 (37%), Positives = 241/433 (55%), Gaps = 22/433 (5%) Query: 32 GGILHDVVNFTMDRVDEVVRKITGTLDNTARIMIPDEKDQVAD-INVNVPKDAIKTLGDS 90 GG D V D++ + V G T RI++ D AD + V + ++IK L DS Sbjct: 2492 GGKKVDTVVMNEDKIKQAVASAIGAHQGTIRIIVDDIPGDPADEVKVKLTVNSIKYLLDS 2551 Query: 91 NVNLEIFTDNVRILIAQSSLDTF--TEDLFFHVVPIKDQSLRKXXXXXXXXXXXXXXXXX 148 ++ + I T+N + ++ +L +++ FF ++PI+ + + Sbjct: 2552 SIQVVIQTENATLHLSTEALGAMKGSQEFFFDILPIRKKDEQDAVKDRTVNAEAIRKIAN 2611 Query: 149 XKQIDVVARPMTIETNMQSRPVTITLPLRDVQLPATLPEREDFLSNLVIFIEHSDGDKEL 208 ++ V+ PMTIETN+ V +T PL +P+ L +R+ FL++L ++IEHSDG+K Sbjct: 2612 SGKVTVIGMPMTIETNLPKVAVQVTFPLDSNVIPSDLNQRKLFLASLGVYIEHSDGEKVF 2671 Query: 209 KKAKIVDYKPG-ELGLQFNVDKFSTFTILNMEGWEQYLAATEXXXXXXXXXXXXKAFITG 267 ++ KIV G +G++ V+KFSTFTI++ EG + A++TG Sbjct: 2672 QRGKIVYNDKGYPVGIEIEVNKFSTFTIVSAEGASVH----------------HNAYMTG 2715 Query: 268 YSDGTFKPNHSITRAEMAAILARNLGYDASAAPAVSSYPDVRDSHWAKGAIEFVKEAGLM 327 YSDGTF+PN S+TRAEM+ +L R L +V+++ DV S WA AI + ++ G++ Sbjct: 2716 YSDGTFRPNQSVTRAEMSTMLYRLLSGTLPGRGSVTAFKDVSGSFWASEAIRWGQQVGIL 2775 Query: 328 QGNEKGRFLPDAPISRGEMAAIASRYKKLDTTAATSGGGFKDAAGHWAAKDIEAASKAGI 387 G F P+A I+R EMAAI ++ +LD AA F+DA GHWA+ I AA+K G Sbjct: 2776 NGYPDHTFKPNATITRAEMAAIIVKWLQLDPDAANPA--FRDAKGHWASVQIAAAAKLGY 2833 Query: 388 INGYEDGTYRPGGNLTRAEAVKVVNRLFGRGPLYGAATPSWPDEPATNWAYNEIEEASID 447 + GY DGT+RP LTRAEAV +VNR+ GRGPL G TP+W D A+ WA+ IEEAS Sbjct: 2834 MTGYSDGTFRPDQPLTRAEAVVIVNRILGRGPLTGVTTPTWKDVSASFWAFGAIEEASRS 2893 Query: 448 HTFTVRNEGGETL 460 H + G ET Sbjct: 2894 HDAARDSGGSETF 2906 >B1DBB3.1 B1DBB3_9BACL S-layer domain protein Length = 1542 Score = 219 bits (557), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 143/424 (33%), Positives = 215/424 (50%), Gaps = 33/424 (7%) Query: 25 IQRTKDSGGILHDVVNFTMDRVDEVV--RKITGTLDNTARIMIPDEKDQVADINVNVPKD 82 + RT G + D + ++ RK +G ++ ++++PD K + A+ V + + Sbjct: 1148 VVRTTQPDGTVRDELTLAATEAKALIDARKASGA--SSLKLVVPDSKGEAAETGVKLDAE 1205 Query: 83 AIKTLGDSNVNLEIFTDNVRILIAQSSLDTFTEDLFFHVVPIKDQSLRKXXXXXXXXXXX 142 A+K L S ++L+I +I + + L ++ F + P+ ++ + Sbjct: 1206 AVKLLAASGLDLDIDVSGAKIHVPNAVLKNVNTEVHFVISPVNER--KAQLERRANLSTV 1263 Query: 143 XXXXXXXKQIDVVARPMTIETNMQSRPVTITLPLRDVQLPATLPEREDFLSNLVIFIEHS 202 +I ++ P I+TN+ T+ LPL PA E LS++ ++IEHS Sbjct: 1264 VSAAVKDSKITLIGIPADIDTNLPEGETTLVLPL-----PAGDWNSE-ALSHIGVYIEHS 1317 Query: 203 DGDKELKKAKIVDYKPGELGLQFNVDKFSTFTILNMEGWEQYLAATEXXXXXXXXXXXXK 262 DG E K+ +VD G+ G+QF KFSTF ++ + A+E Sbjct: 1318 DGTVEYKQGSVVDMDGGK-GIQFKNSKFSTFALVKLG------EASESAPA--------- 1361 Query: 263 AFITGYSDGTFKPNHSITRAEMAAILARNLGYDASAAPAVSSYPDVRDSHWAKGAIEFVK 322 A++ G+ FKP +ITRAEMA IL+R + DA+A Y DV+ +WA AI Sbjct: 1362 AYMNGFEGNLFKPEKAITRAEMATILSR-IAQDATAGEDSRVYSDVKQGYWAADAIRKAT 1420 Query: 323 EAGLMQGNEKGRFLPDAPISRGEMAAIASRYKKLDTTAATSGGGFKDAAGHWAAKDIEAA 382 AGLM+G G F P+ I+R EMA +A R L + G GF D GHWA + ++AA Sbjct: 1421 AAGLMKGYADGTFRPEKAITRAEMAQLAVR---LAGGGSKLGAGFADTTGHWAEQAVKAA 1477 Query: 383 SKAGIINGYEDGTYRPGGNLTRAEAVKVVNRLFGRGPLYGAATPSWPDEPATNWAYNEIE 442 AG I GY DG +RP L+RAEAV V+NR G P G A+ SW D PA++WAY +IE Sbjct: 1478 EGAGYIKGYADGMFRPDRTLSRAEAVVVINRSLGINPSSGGAS-SWKDVPASHWAYGDIE 1536 Query: 443 EASI 446 ASI Sbjct: 1537 AASI 1540 >Q250G1.1 Q250G1_DESHY Putative uncharacterized protein Length = 1642 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 140/242 (57%), Gaps = 6/242 (2%) Query: 4 RITVKVESGQLGLGSVLAETVIQRTKDSGGILHDVVNFTMDRVDEVVRKITGTLDNTARI 63 +ITV V+ G S +A+ ++R S G D V + + E V+K+ +TARI Sbjct: 1091 QITVDVKQGNTD--STVAQITVERRTGSDGKKTDTVTYQESKAAETVKKLKEENRDTARI 1148 Query: 64 MIPDEKDQVADINVNVPKDAIKTLGDSNVNLEIFTDNVRILIAQSSLDTFTE----DLFF 119 +IPDEKD+VA+ VN+P A++ L +NL+I T+ +I IA+ ++ ++ DL+F Sbjct: 1149 VIPDEKDEVAETKVNIPVQALEVLAQGGINLQIDTEEAKIDIAKKTITGISQEVEGDLYF 1208 Query: 120 HVVPIKDQSLRKXXXXXXXXXXXXXXXXXXKQIDVVARPMTIETNMQSRPVTITLPLRDV 179 +VP+KD++ +K + +V P+TIETNM S ITLPL + Sbjct: 1209 RLVPVKDEAQKKSTIDQALLKAALISGNTDSSLSIVGNPVTIETNMSSTEADITLPLTGM 1268 Query: 180 QLPATLPEREDFLSNLVIFIEHSDGDKELKKAKIVDYKPGELGLQFNVDKFSTFTILNME 239 LP+ E+ L L ++IEHSDGDKEL + ++V+YK G G++F+++KFS FT++ + Sbjct: 1269 TLPSNPAEKAALLQQLAVYIEHSDGDKELLQGELVEYKEGVYGIRFHINKFSIFTVVRTD 1328 Query: 240 GW 241 + Sbjct: 1329 AF 1330 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,534,099,382 Number of extensions: 102012964 Number of successful extensions: 273171 Number of sequences better than 1.0e-05: 1414 Number of HSP's gapped: 269412 Number of HSP's successfully gapped: 2308 Length of query: 462 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 323 Effective length of database: 1,751,175,118 Effective search space: 565629563114 Effective search space used: 565629563114 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)