BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0009.p (417 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A1E354.1 A1E354_9BACI L-N-carbamoylase 529 e-148 C1PCA8.1 C1PCA8_BACCO Amidase, hydantoinase/carbamoylase family ... 525 e-147 A3I8S5.1 A3I8S5_9BACI N-carbamoyl-L-amino acid amidohydrolase 481 e-134 B1HU35.1 B1HU35_LYSSC N-carbamoyl-L-amino acid hydrolase EC=3.5.... 474 e-132 Q5WBE4.1 Q5WBE4_BACSK N-carbamoyl-L-amino acid amidohydrolase EC... 449 e-124 >A1E354.1 A1E354_9BACI L-N-carbamoylase Length = 413 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 252/408 (61%), Positives = 307/408 (75%), Gaps = 3/408 (0%) Query: 6 MQVKQIFVNGERLKDTIEVFAGFGRTENNGVTRLSLSGQDVKVRNYFAACCEELGMSIKV 65 M+ +++ +NGERLKDTIE FA FGRTE NGVTRL+LS DVK R +F + CE+LGMS+ Sbjct: 1 MEKQKVLINGERLKDTIEEFADFGRTEKNGVTRLALSDVDVKARRHFQSLCEQLGMSVVW 60 Query: 66 DDMGTMYATLEGTEAG-PPVVIGSHLDTVKKGGRFDGVLGVIAGLEVVRTLVDHGIKPRL 124 DDMG MYA L G + PPVVIGSHLD+VKKGGRFDG LGV+ GLEVVRT+V++GIKP + Sbjct: 61 DDMGNMYAKLPGIDNDQPPVVIGSHLDSVKKGGRFDGTLGVLTGLEVVRTMVENGIKPEI 120 Query: 125 PVTVMNFTNEEGARFEPSMMASGVLSGKFDRAEMLKKKDTEGTTFAEALEASGYAGDAAN 184 P+ V N TNEEGARFEPS+MASGVLSG+FD+A MLK D +G TFAEAL+ SGY G N Sbjct: 121 PIIVANITNEEGARFEPSLMASGVLSGRFDKAAMLKSTDVDGITFAEALKKSGYEGKKEN 180 Query: 185 RIKEATAYLELHIEQGPVLEKENLSIGLVDCVVGMACYELEVTGESDHAGTTPMDMRKDX 244 R+KEA A+LELHIEQGPVLE E++ IG+V+CVVGM C+E+EVTGESDHAGTTPM MRKD Sbjct: 181 RLKEAAAFLELHIEQGPVLESEDIQIGIVECVVGMVCFEIEVTGESDHAGTTPMSMRKDA 240 Query: 245 XXXXXXXXXXXRSKLGVLDSELVFTMGRMNVLPNIHTVIPNKVIFTVEARHKDMDIVRTV 304 R K+ LD +LV+T+GRM V PNIHTVIPNKV+FT+ ARH+D I+R V Sbjct: 241 LFAANQLISEIRQKMNRLDDQLVYTVGRMTVSPNIHTVIPNKVVFTIGARHQDGKIIRQV 300 Query: 305 EEIINALPEE--LLGCTVAKTRLWGRDTVWFDPAVCALVEQAASALGYSSKKMASGAGHD 362 EEII LP C V T+LW R TVWF+ + +E++A +LGYS K+M SGAGHD Sbjct: 301 EEIIQGLPNSSGKEKCNVTTTKLWDRHTVWFNEEIVNTLEKSARSLGYSFKRMVSGAGHD 360 Query: 363 AQFVAGFLPSAMIFVPSANGKSHCXXXXXXXXXXXQGVNVVLETVLSI 410 AQF+A ++P+AM+FVPS NGKSH GVNV+L+TVL + Sbjct: 361 AQFIATYIPTAMVFVPSINGKSHDEDELTTWEDCENGVNVILQTVLDL 408 >C1PCA8.1 C1PCA8_BACCO Amidase, hydantoinase/carbamoylase family EC=3.5.1.87 Length = 409 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 246/409 (60%), Positives = 306/409 (74%) Query: 6 MQVKQIFVNGERLKDTIEVFAGFGRTENNGVTRLSLSGQDVKVRNYFAACCEELGMSIKV 65 MQ +++ VN +RL++T+E FA FGRT NNGVTRLSLS +D+ R Y CC+E+GM +K Sbjct: 1 MQQQKMLVNAQRLQETLEKFASFGRTPNNGVTRLSLSQEDLTAREYLETCCKEIGMEVKY 60 Query: 66 DDMGTMYATLEGTEAGPPVVIGSHLDTVKKGGRFDGVLGVIAGLEVVRTLVDHGIKPRLP 125 DDM MYAT+ G E PPVV+GSHLD+VKKGGRFDGVLGV A LEV RT+ D+ IK +P Sbjct: 61 DDMANMYATMPGKEGKPPVVMGSHLDSVKKGGRFDGVLGVAAALEVARTIHDNRIKLEIP 120 Query: 126 VTVMNFTNEEGARFEPSMMASGVLSGKFDRAEMLKKKDTEGTTFAEALEASGYAGDAANR 185 T++NFTNEEGARFEP+MM SGV+SGKFD+ +L+ +D G TF EAL ASGYAG NR Sbjct: 121 FTIVNFTNEEGARFEPAMMCSGVISGKFDKQTVLQSRDETGMTFGEALSASGYAGSVENR 180 Query: 186 IKEATAYLELHIEQGPVLEKENLSIGLVDCVVGMACYELEVTGESDHAGTTPMDMRKDXX 245 +K+A A+LE+HIEQGPVLE E+ IG+V+ VVGM YE+EVTGES+HAGTTPM MR+D Sbjct: 181 LKKAAAFLEMHIEQGPVLESEDKQIGIVEGVVGMVNYEIEVTGESNHAGTTPMGMRRDAL 240 Query: 246 XXXXXXXXXXRSKLGVLDSELVFTMGRMNVLPNIHTVIPNKVIFTVEARHKDMDIVRTVE 305 R +L +LD ELV+TMGRMNV PNIHTVIPNKV+FT+EARHKD +V V Sbjct: 241 FVACDIIRDVREQLSMLDPELVYTMGRMNVYPNIHTVIPNKVVFTLEARHKDPQVVSQVV 300 Query: 306 EIINALPEELLGCTVAKTRLWGRDTVWFDPAVCALVEQAASALGYSSKKMASGAGHDAQF 365 I LP+E+ GCT+A +LW RDTV FD + + +E++A +LG S+K+M SGAGHDAQF Sbjct: 301 STIRTLPQEMGGCTIASKKLWSRDTVAFDQGIVSRLEKSAQSLGISAKRMYSGAGHDAQF 360 Query: 366 VAGFLPSAMIFVPSANGKSHCXXXXXXXXXXXQGVNVVLETVLSILAKQ 414 +A +LP+AMIFVPSA GKSHC +G NV L+TVLS+L Q Sbjct: 361 IASYLPTAMIFVPSAGGKSHCEEELTSYEDCARGANVALDTVLSLLTGQ 409 >A3I8S5.1 A3I8S5_9BACI N-carbamoyl-L-amino acid amidohydrolase Length = 406 Score = 481 bits (1237), Expect = e-134, Method: Compositional matrix adjust. Identities = 219/398 (55%), Positives = 294/398 (73%) Query: 18 LKDTIEVFAGFGRTENNGVTRLSLSGQDVKVRNYFAACCEELGMSIKVDDMGTMYATLEG 77 +++ IE F+ FG TEN GVTRLSLS +DV RNYF CCE LGM I VDDMG +YATL G Sbjct: 1 MRELIEQFSQFGATENGGVTRLSLSDEDVLARNYFCECCEALGMDIHVDDMGNIYATLAG 60 Query: 78 TEAGPPVVIGSHLDTVKKGGRFDGVLGVIAGLEVVRTLVDHGIKPRLPVTVMNFTNEEGA 137 + PP+V+GSHLD+V+KGGRFDGVLG++ +E +RT+ ++ I+ +P+ ++NFTNEEGA Sbjct: 61 KKDVPPIVMGSHLDSVEKGGRFDGVLGILTAIEAIRTIKENEIEVDIPLMIVNFTNEEGA 120 Query: 138 RFEPSMMASGVLSGKFDRAEMLKKKDTEGTTFAEALEASGYAGDAANRIKEATAYLELHI 197 RF+P+MM+SGV++ KFD+ +ML+ D G F EAL+ASGY G+ ANR+KEA AY+ELHI Sbjct: 121 RFDPAMMSSGVITSKFDKEKMLQSTDKNGVRFHEALQASGYEGEQANRLKEALAYIELHI 180 Query: 198 EQGPVLEKENLSIGLVDCVVGMACYELEVTGESDHAGTTPMDMRKDXXXXXXXXXXXXRS 257 EQGPVLE + IG+V+ V+GM CYE+ +TG+S+HAGTTPM MRKD Sbjct: 181 EQGPVLEAKQHEIGVVEGVLGMVCYEITITGQSNHAGTTPMTMRKDPMIVASTIITELHE 240 Query: 258 KLGVLDSELVFTMGRMNVLPNIHTVIPNKVIFTVEARHKDMDIVRTVEEIINALPEELLG 317 +LG +D +LVFT GR+NV PNIHTVIPN+V FT+++RH++ +++ VE+I+ ALPE G Sbjct: 241 QLGKIDEQLVFTFGRLNVSPNIHTVIPNQVTFTIDSRHQNPEVMEQVEDILLALPETAGG 300 Query: 318 CTVAKTRLWGRDTVWFDPAVCALVEQAASALGYSSKKMASGAGHDAQFVAGFLPSAMIFV 377 C + +LWGRDTV+FD A+C VE+A + GY+ +M SGAGHDAQ++A +PSAMIFV Sbjct: 301 CNIHPVKLWGRDTVYFDTAICNEVERACQSFGYTVHRMFSGAGHDAQYMASMVPSAMIFV 360 Query: 378 PSANGKSHCXXXXXXXXXXXQGVNVVLETVLSILAKQS 415 PS GKSHC +G +++LETVL++ K S Sbjct: 361 PSIQGKSHCEEEKTTFEDCAKGADILLETVLTLQTKFS 398 >B1HU35.1 B1HU35_LYSSC N-carbamoyl-L-amino acid hydrolase EC=3.5.1.87 Length = 406 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 216/398 (54%), Positives = 293/398 (73%) Query: 18 LKDTIEVFAGFGRTENNGVTRLSLSGQDVKVRNYFAACCEELGMSIKVDDMGTMYATLEG 77 +++ IE F+ FG T+ GVTRLSLS +DV RNYF CCE LGM I VDDMG +YATL G Sbjct: 1 MQELIEQFSQFGATDKGGVTRLSLSDEDVLARNYFCECCEALGMDIHVDDMGNIYATLPG 60 Query: 78 TEAGPPVVIGSHLDTVKKGGRFDGVLGVIAGLEVVRTLVDHGIKPRLPVTVMNFTNEEGA 137 + PP+V+GSHLD+V+KGG+FDGVLGV+ +E +RT+ ++ I+ +P+ ++NFTNEEGA Sbjct: 61 KKDMPPIVMGSHLDSVEKGGKFDGVLGVLTAIEAIRTIKENEIEVDIPLMIVNFTNEEGA 120 Query: 138 RFEPSMMASGVLSGKFDRAEMLKKKDTEGTTFAEALEASGYAGDAANRIKEATAYLELHI 197 RF+P+MM+SGV++ KFD+ +ML+ D G F EAL+ASGY G+ NR+KEA AY+ELHI Sbjct: 121 RFDPAMMSSGVITSKFDKEKMLQSTDKNGVRFHEALQASGYEGEQGNRLKEALAYIELHI 180 Query: 198 EQGPVLEKENLSIGLVDCVVGMACYELEVTGESDHAGTTPMDMRKDXXXXXXXXXXXXRS 257 EQGPVLE + IG+V+ V+GM CYE+ +TG+S+HAGTTPM MRKD Sbjct: 181 EQGPVLEAKQREIGVVEGVLGMVCYEITITGQSNHAGTTPMAMRKDPMIVASTIITELHE 240 Query: 258 KLGVLDSELVFTMGRMNVLPNIHTVIPNKVIFTVEARHKDMDIVRTVEEIINALPEELLG 317 +LG +D +LVFT GRMNV+PNIHTVIPN+V FT+++RH+ +++ VE+I+NALPE G Sbjct: 241 QLGKIDEQLVFTFGRMNVVPNIHTVIPNRVTFTIDSRHQYPEVMEQVEDILNALPETAGG 300 Query: 318 CTVAKTRLWGRDTVWFDPAVCALVEQAASALGYSSKKMASGAGHDAQFVAGFLPSAMIFV 377 C + +LWGR+TV FD A+C +E+A + GY++ +M SGAGHDAQ++A +PSAMIFV Sbjct: 301 CNIHPVKLWGRETVHFDGAICNEIERACQSFGYTAHRMFSGAGHDAQYMASMVPSAMIFV 360 Query: 378 PSANGKSHCXXXXXXXXXXXQGVNVVLETVLSILAKQS 415 PS GKSHC +G +++LETVL++ K S Sbjct: 361 PSIQGKSHCEEEETTFEDCAKGADILLETVLTLQTKFS 398 >Q5WBE4.1 Q5WBE4_BACSK N-carbamoyl-L-amino acid amidohydrolase EC=3.5.1.- Length = 414 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/407 (53%), Positives = 285/407 (70%), Gaps = 8/407 (1%) Query: 6 MQVKQIFVNGERLKDTIEVFAGFGRTENNGVTRLSLSGQDVKVRNYFAACCEELGMSIKV 65 M ++ VN ERLK T++ FA FG T NNGVTRL+LS +D + R Y CE LG+ + Sbjct: 1 MNTNKLTVNHERLKQTLQTFAAFGATGNNGVTRLALSEEDQQARAYLRQQCEALGLVVTT 60 Query: 66 DDMGTMYATLEGTEAG-PPVVIGSHLDTVKKGGRFDGVLGVIAGLEVVRTLVDHGIKPRL 124 DD+G MY+ + G + PPV +GSHLDTVKKGGRFDGVLGV LEV+RT+V+H ++ + Sbjct: 61 DDLGNMYSVIPGKQRDVPPVYLGSHLDTVKKGGRFDGVLGVAGALEVLRTVVEHKLELNV 120 Query: 125 PVTVMNFTNEEGARFEPSMMASGVLSGKFDRAEMLKKKDTEGTTFAEALEASGYAGDAAN 184 P+ ++NFTNEEGARFEPSMMASG+L+GKF + ML+ D +G +F EAL ASG+AG A + Sbjct: 121 PLGLINFTNEEGARFEPSMMASGILAGKFSKDAMLQSTDQDGVSFGEALAASGFAGSAHH 180 Query: 185 RIKEATAYLELHIEQGPVLEKENLSIGLVDCVVGMACYELEVTGESDHAGTTPMDMRKDX 244 R+ +A+A+LELHIEQGPVLE E +IG V+CVVGM CYE+E+ G+S+HAGTTP MR D Sbjct: 181 RLTDASAFLELHIEQGPVLEAEKQTIGAVECVVGMVCYEIEICGKSNHAGTTPQRMRHDA 240 Query: 245 XXXXXXXXXXXRSKLGVLDSELVFTMGRMNVLPNIHTVIPNKVIFTVEARHKDMDIVRTV 304 KL LD LV+T+GR NV PNIHTVIP + +FT+EARH+D ++ V Sbjct: 241 LTAANACMTAFHEKLAPLDDTLVYTIGRFNVFPNIHTVIPGRAVFTLEARHQDEAVLAAV 300 Query: 305 EEIINALPEELLG-CTV--AKTRLWGRDTVWFDPAVCALVEQAASALGYSSKKMASGAGH 361 E +I +E+ G C++ T+ W R+TVWF+ ++ A VE++A ALGY K+M SGAGH Sbjct: 301 ETVI----QEVAGACSLPCQATKRWSRETVWFNNSLVAQVEESAKALGYPCKRMVSGAGH 356 Query: 362 DAQFVAGFLPSAMIFVPSANGKSHCXXXXXXXXXXXQGVNVVLETVL 408 DAQF++ +P+AMIFVPS G SH +GVNV+LET L Sbjct: 357 DAQFISSLVPTAMIFVPSRGGISHAEEEWTSWEDCEKGVNVLLETAL 403 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,282,799,569 Number of extensions: 93029954 Number of successful extensions: 213176 Number of sequences better than 1.0e-05: 940 Number of HSP's gapped: 210106 Number of HSP's successfully gapped: 940 Length of query: 417 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 279 Effective length of database: 1,760,596,133 Effective search space: 491206321107 Effective search space used: 491206321107 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)