BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0005.p
         (80 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8N6.1 B3K8N6_9BACI Small acid soluble protein                      107   3e-22
B1DCX5.1 B1DCX5_9BACL Small acid soluble protein                      102   1e-20
C1PFM2.1 C1PFM2_BACCO Small acid-soluble spore protein alpha/bet...    98   2e-19
Q2B748.1 Q2B748_9BACI Small acid soluble protein                       89   1e-16
Q9KBL1.1 Q9KBL1_BACHD Small acid soluble protein                       74   3e-12

>B3K8N6.1 B3K8N6_9BACI Small acid soluble protein
          Length = 87

 Score =  107 bits (267), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/73 (67%), Positives = 60/73 (82%)

Query: 1  MQTLKANVMKNEGFRVDPDRPDDVKYEVAKELGIPLQPGNNGALTTESAGQVGGKIGGSM 60
          MQ    NVM+NEG++VDP R  D+KYEVAK LG+PL+PG+N  LTTE AG+VGG IGGSM
Sbjct: 13 MQQFMTNVMRNEGYQVDPQRQQDLKYEVAKSLGVPLKPGDNRDLTTEQAGKVGGAIGGSM 72

Query: 61 VREMIRLAQEQLT 73
          VREM+R+AQE L+
Sbjct: 73 VREMVRMAQESLS 85


>B1DCX5.1 B1DCX5_9BACL Small acid soluble protein
          Length = 78

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 61/74 (82%), Gaps = 1/74 (1%)

Query: 1  MQTLKANVMKNEGFRVDPDRPDDVKYEVAKELGIPL-QPGNNGALTTESAGQVGGKIGGS 59
          MQTLKANVM+ EG+ VD + PDDVKYEVA E+GI + + G+NG + TE AG VGGKIGG+
Sbjct: 1  MQTLKANVMRQEGYAVDENSPDDVKYEVASEMGIRMNRNGDNGNMKTEDAGHVGGKIGGA 60

Query: 60 MVREMIRLAQEQLT 73
          M+REMIR+AQE+L 
Sbjct: 61 MIREMIRMAQEKLA 74


>C1PFM2.1 C1PFM2_BACCO Small acid-soluble spore protein alpha/beta type
          Length = 91

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 55/72 (76%)

Query: 1  MQTLKANVMKNEGFRVDPDRPDDVKYEVAKELGIPLQPGNNGALTTESAGQVGGKIGGSM 60
          +   K  VM  EG+R D D+PDD+KYEVA E GIPLQ G NG LT E AG++GG IGG+M
Sbjct: 17 LDRFKTEVMAKEGYRTDTDQPDDIKYEVASERGIPLQKGYNGKLTAEQAGKIGGPIGGNM 76

Query: 61 VREMIRLAQEQL 72
          V+E++R+AQEQL
Sbjct: 77 VKELVRMAQEQL 88


>Q2B748.1 Q2B748_9BACI Small acid soluble protein
          Length = 68

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 53/68 (77%)

Query: 9  MKNEGFRVDPDRPDDVKYEVAKELGIPLQPGNNGALTTESAGQVGGKIGGSMVREMIRLA 68
          M N+G++V PD P++VKYEVA+E  +PLQ G NG LT+  AG+VGG IGGSMV+E+IRLA
Sbjct: 1  MANQGYKVGPDAPEEVKYEVAREKDVPLQHGYNGRLTSREAGKVGGPIGGSMVKELIRLA 60

Query: 69 QEQLTNSE 76
          QE L   +
Sbjct: 61 QESLNKKQ 68


>Q9KBL1.1 Q9KBL1_BACHD Small acid soluble protein
          Length = 93

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 4/68 (5%)

Query: 4  LKANVMKNEGFRVDPDRPDDVKYEVAKELGIPLQPGNNGALTTESAGQVGGKIGGSMVRE 63
          LK +VM  +G++      +DVKYEVA+ELG+PL  G NG L++  AG+VGG+IGG MV+E
Sbjct: 19 LKQDVMATQGYQTS----NDVKYEVARELGVPLTKGYNGKLSSNEAGKVGGRIGGQMVKE 74

Query: 64 MIRLAQEQ 71
          MI +A +Q
Sbjct: 75 MISMALQQ 82


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.309    0.129    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 464,029,796
Number of extensions: 16689798
Number of successful extensions: 41476
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 41552
Number of HSP's successfully gapped: 8
Length of query: 80
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 29
Effective length of database: 2,580,224,438
Effective search space: 74826508702
Effective search space used: 74826508702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 125 (52.8 bits)