BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0002.p (318 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2VUT2.1 C2VUT2_BACCE Transposase 481 e-134 C3G585.1 C3G585_BACTU Transposase 480 e-134 B9J0R5.1 B9J0R5_BACCQ Transposase 477 e-133 B9ITN4.1 B9ITN4_BACCQ Transposase 477 e-133 Q812H0.1 Q812H0_BACCR Transposase 476 e-132 >C2VUT2.1 C2VUT2_BACCE Transposase Length = 359 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 234/359 (65%), Positives = 269/359 (74%), Gaps = 41/359 (11%) Query: 1 MSQTLTIKIKLLPTREQ----------------------------------------ASM 20 MSQT+T+K+KLLPT+EQ S Sbjct: 1 MSQTITVKVKLLPTKEQIQLLEQSSYEYIKVINTLVSEMAEAKKSTKKSTKDVEANLPSA 60 Query: 21 VKNQAIXXXXXX-XXXXXXXXXTIVPVLKKPVCIWNNQNYSFDFTHISMPLMMNGKVAKT 79 VKNQAI ++P+LK+PVC+WNNQNYSFDFTHIS+PLM+NGK + Sbjct: 61 VKNQAIKDAKSVFSTKVKKSKYKVIPILKRPVCVWNNQNYSFDFTHISVPLMVNGKSTRL 120 Query: 80 PIRALLIDKDNRNLGLLKHKSGTLRITQKSEKWIAQISVTVPTSEKTGTKIMGVDLGLKV 139 +RALL DK NRN LL HK GTLRIT+KS KWIAQISVT+PT+EKTGTKI+GVDLGLKV Sbjct: 121 KVRALLTDKYNRNFNLLTHKLGTLRITKKSNKWIAQISVTIPTNEKTGTKILGVDLGLKV 180 Query: 140 PAVAVTDDDQTCFFGNERQNKYIRRKFQSKRKKLGQRKKLNAIVKLDDKEQRYMKDQDHK 199 PAVA+TDDD+ FFGN RQNKY++RKF+S RKKLG+ KKLNAI +LDDKEQR+M+DQDHK Sbjct: 181 PAVAITDDDKVRFFGNGRQNKYMKRKFRSVRKKLGENKKLNAIRQLDDKEQRWMQDQDHK 240 Query: 200 ISRAIVQFAVEHQISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFIEYKAKLAGV 259 +SR I+ FA E+ ISVIRLEQL NIRQTARTSRKNEK++H WSFYRL+QFIEYKA L G+ Sbjct: 241 VSREIIDFATENNISVIRLEQLTNIRQTARTSRKNEKNLHTWSFYRLAQFIEYKANLVGI 300 Query: 260 KVEYVNPAHTSRTCPKCSEKNKAQDRKYICSCGFETHRDRVGAMNIRYAPVIDGNSQSA 318 KVEYVNPA+TS+TCPKCSEKNKA DRKY C CGFE HRD VGAMNIRYA VIDGNSQSA Sbjct: 301 KVEYVNPAYTSQTCPKCSEKNKASDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNSQSA 359 >C3G585.1 C3G585_BACTU Transposase Length = 359 Score = 480 bits (1236), Expect = e-134, Method: Compositional matrix adjust. Identities = 233/359 (64%), Positives = 269/359 (74%), Gaps = 41/359 (11%) Query: 1 MSQTLTIKIKLLPTREQ----------------------------------------ASM 20 MSQT+T+K+KLLPT+EQ S Sbjct: 1 MSQTITVKVKLLPTKEQIQLLEQSSYEYIKVINTLVSEMAEAKKSTKKSTKDVEANLPSA 60 Query: 21 VKNQAIXXXXXX-XXXXXXXXXTIVPVLKKPVCIWNNQNYSFDFTHISMPLMMNGKVAKT 79 VKNQAI ++P+LK+PVC+WNNQNYSFDFTHIS+PLM+NGK + Sbjct: 61 VKNQAIKDAKSVFSTKVKKSKYKVIPILKRPVCVWNNQNYSFDFTHISVPLMVNGKSTRL 120 Query: 80 PIRALLIDKDNRNLGLLKHKSGTLRITQKSEKWIAQISVTVPTSEKTGTKIMGVDLGLKV 139 +RALL DK NRN LL HK GTLRIT+KS KWIAQISVT+PT+EKTGTKI+GVDLGLKV Sbjct: 121 KVRALLTDKYNRNFNLLTHKLGTLRITKKSNKWIAQISVTIPTNEKTGTKILGVDLGLKV 180 Query: 140 PAVAVTDDDQTCFFGNERQNKYIRRKFQSKRKKLGQRKKLNAIVKLDDKEQRYMKDQDHK 199 PAVA+TDDD+ FFGN RQNKY++RKF+S RKKLG+ KKLNAI +LDDKEQR+M+DQDHK Sbjct: 181 PAVAITDDDKVRFFGNGRQNKYMKRKFRSVRKKLGENKKLNAIRQLDDKEQRWMQDQDHK 240 Query: 200 ISRAIVQFAVEHQISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFIEYKAKLAGV 259 +SR I+ FA E+ ISVIRLEQL NIRQTARTSRKNEK++H WSFYRL+QF+EYKA L G+ Sbjct: 241 VSREIIDFATENNISVIRLEQLTNIRQTARTSRKNEKNLHTWSFYRLAQFVEYKANLVGI 300 Query: 260 KVEYVNPAHTSRTCPKCSEKNKAQDRKYICSCGFETHRDRVGAMNIRYAPVIDGNSQSA 318 KVEYVNPA+TS+TCPKCSEKNKA DRKY C CGFE HRD VGAMNIRYA VIDGNSQSA Sbjct: 301 KVEYVNPAYTSQTCPKCSEKNKASDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNSQSA 359 >B9J0R5.1 B9J0R5_BACCQ Transposase Length = 359 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 232/359 (64%), Positives = 269/359 (74%), Gaps = 41/359 (11%) Query: 1 MSQTLTIKIKLLPTREQ----------------------------------------ASM 20 MSQT+T+K+KLLPT+EQ S Sbjct: 1 MSQTITVKVKLLPTKEQIQLLEQSSSEYIKVINTLVSEMAEAKKSTKKSTKDVEANLPSA 60 Query: 21 VKNQAIXXXXXX-XXXXXXXXXTIVPVLKKPVCIWNNQNYSFDFTHISMPLMMNGKVAKT 79 VKNQAI ++P+LK+PVC+WNNQNYSFDFTHIS+PLM+NGK + Sbjct: 61 VKNQAIRDAKSVFSTKVKKSKYKVIPILKRPVCVWNNQNYSFDFTHISVPLMVNGKSTRL 120 Query: 80 PIRALLIDKDNRNLGLLKHKSGTLRITQKSEKWIAQISVTVPTSEKTGTKIMGVDLGLKV 139 +RALL DK NRN LL HK GTLRIT+KS KWIAQISVT+PT+EKTGTKI+GVDLGLKV Sbjct: 121 KVRALLTDKYNRNFNLLTHKLGTLRITKKSNKWIAQISVTIPTNEKTGTKILGVDLGLKV 180 Query: 140 PAVAVTDDDQTCFFGNERQNKYIRRKFQSKRKKLGQRKKLNAIVKLDDKEQRYMKDQDHK 199 PAVA+TDDD+ FFGN RQNKY++RKF+S RKKLG+ KKLNAI +LDDKEQR+M+DQDHK Sbjct: 181 PAVAITDDDKVRFFGNGRQNKYMKRKFRSVRKKLGENKKLNAIRQLDDKEQRWMQDQDHK 240 Query: 200 ISRAIVQFAVEHQISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFIEYKAKLAGV 259 +SR I+ FA+++ ISVIRLEQL NIRQTARTSRKNEK++H WSFYRL+QFIEYKA L G+ Sbjct: 241 VSREIIDFAIDNNISVIRLEQLTNIRQTARTSRKNEKNLHTWSFYRLAQFIEYKANLVGI 300 Query: 260 KVEYVNPAHTSRTCPKCSEKNKAQDRKYICSCGFETHRDRVGAMNIRYAPVIDGNSQSA 318 KVEYVNPA+TS+TCPKCSEKNK DRKY C CGFE HRD VGAMNIRYA VIDGNSQSA Sbjct: 301 KVEYVNPAYTSQTCPKCSEKNKVPDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNSQSA 359 >B9ITN4.1 B9ITN4_BACCQ Transposase Length = 359 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 232/359 (64%), Positives = 269/359 (74%), Gaps = 41/359 (11%) Query: 1 MSQTLTIKIKLLPTREQ----------------------------------------ASM 20 MSQT+T+K+KLLPT+EQ S Sbjct: 1 MSQTITVKVKLLPTKEQIQLLEQSSYEYIKVINTLVSEMAEAKKSTKKSTKDVEANLPSA 60 Query: 21 VKNQAIXXXXXX-XXXXXXXXXTIVPVLKKPVCIWNNQNYSFDFTHISMPLMMNGKVAKT 79 VKNQAI ++P+LK+PVC+WNNQNYSFDFTHIS+PLM+NGK + Sbjct: 61 VKNQAIKDAKSMFSTKVKKSKYKVIPILKRPVCVWNNQNYSFDFTHISVPLMVNGKSTRL 120 Query: 80 PIRALLIDKDNRNLGLLKHKSGTLRITQKSEKWIAQISVTVPTSEKTGTKIMGVDLGLKV 139 +RALL DK NRN LL HK GTLRIT+KS KWIAQISVT+PT+EKTGTKI+GVDLGLKV Sbjct: 121 KVRALLTDKYNRNFNLLTHKLGTLRITKKSNKWIAQISVTIPTNEKTGTKILGVDLGLKV 180 Query: 140 PAVAVTDDDQTCFFGNERQNKYIRRKFQSKRKKLGQRKKLNAIVKLDDKEQRYMKDQDHK 199 PAVA+TDDD+ FFGN RQNKY++RKF+S RKKLG+ KKLNAI +LDDKEQR+M+DQDHK Sbjct: 181 PAVAITDDDKVRFFGNGRQNKYMKRKFRSVRKKLGENKKLNAIRQLDDKEQRWMQDQDHK 240 Query: 200 ISRAIVQFAVEHQISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFIEYKAKLAGV 259 +SR I+ FA ++ ISVIRLEQL NIRQTARTSRKNE+++H WSFYRL+QFIEYKA L G+ Sbjct: 241 VSREIIDFATDNNISVIRLEQLTNIRQTARTSRKNERNLHTWSFYRLAQFIEYKANLVGI 300 Query: 260 KVEYVNPAHTSRTCPKCSEKNKAQDRKYICSCGFETHRDRVGAMNIRYAPVIDGNSQSA 318 KVEYVNPA+TS+TCPKCSEKNKA DRKY C CGFE HRD VGAMNIRYA VIDGNSQSA Sbjct: 301 KVEYVNPAYTSQTCPKCSEKNKAPDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNSQSA 359 >Q812H0.1 Q812H0_BACCR Transposase Length = 359 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 232/359 (64%), Positives = 269/359 (74%), Gaps = 41/359 (11%) Query: 1 MSQTLTIKIKLLPTREQ----------------------------------------ASM 20 MSQT+T+K+KLLPT+EQ S Sbjct: 1 MSQTITVKVKLLPTKEQIQLLEQSSYEYIKVINTLVSEMAEAKKSTKKSTKDVEANLPSA 60 Query: 21 VKNQAIXXXXXX-XXXXXXXXXTIVPVLKKPVCIWNNQNYSFDFTHISMPLMMNGKVAKT 79 VKNQAI ++P+LK+PVC+WNNQNYSFDFTHIS+PLM+NGK + Sbjct: 61 VKNQAIKDAKSVFSTKVKKSKYKVIPILKRPVCVWNNQNYSFDFTHISVPLMVNGKSTRL 120 Query: 80 PIRALLIDKDNRNLGLLKHKSGTLRITQKSEKWIAQISVTVPTSEKTGTKIMGVDLGLKV 139 +RALL DK NRN LL HK GTLRIT+KS KWIAQISVT+PT+EKTGTKI+GVDLGLKV Sbjct: 121 KVRALLTDKYNRNFNLLTHKLGTLRITKKSNKWIAQISVTIPTNEKTGTKILGVDLGLKV 180 Query: 140 PAVAVTDDDQTCFFGNERQNKYIRRKFQSKRKKLGQRKKLNAIVKLDDKEQRYMKDQDHK 199 PAVA+TDD++ FFGN RQNKY++RKF+S RKKLG+ KKLNAI +LDDKEQR+M+DQDHK Sbjct: 181 PAVAITDDEKVRFFGNGRQNKYMKRKFRSVRKKLGENKKLNAIRQLDDKEQRWMQDQDHK 240 Query: 200 ISRAIVQFAVEHQISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFIEYKAKLAGV 259 +SR I+ FA ++ ISVIRLEQL NIRQTARTSRKNEK++H WSFYRL+QFIEYKA L G+ Sbjct: 241 VSREIIDFATDNNISVIRLEQLTNIRQTARTSRKNEKNLHTWSFYRLAQFIEYKANLVGI 300 Query: 260 KVEYVNPAHTSRTCPKCSEKNKAQDRKYICSCGFETHRDRVGAMNIRYAPVIDGNSQSA 318 KVEYVNPA+TS+TCPKCSEKNKA DRKY C CGFE HRD VGAMNIRYA VIDGNSQSA Sbjct: 301 KVEYVNPAYTSQTCPKCSEKNKAPDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNSQSA 359 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,648,253,333 Number of extensions: 62043354 Number of successful extensions: 161821 Number of sequences better than 1.0e-05: 838 Number of HSP's gapped: 161608 Number of HSP's successfully gapped: 838 Length of query: 318 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 183 Effective length of database: 1,788,859,178 Effective search space: 327361229574 Effective search space used: 327361229574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)