BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0001.p (491 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5P2.1 B3K5P2_9BACI Extracellular solute-binding protein family 1 149 5e-34 B1D7Q4.1 B1D7Q4_9BACL Extracellular solute-binding protein family 1 146 4e-33 B3KEQ6.1 B3KEQ6_9BACI Extracellular solute-binding protein family 1 134 3e-29 C1XFR4.1 C1XFR4_MEIRU Carbohydrate ABC transporter substrate-bin... 87 3e-15 A6UJ69.1 A6UJ69_SINMW Extracellular solute-binding protein family 1 84 3e-14 >B3K5P2.1 B3K5P2_9BACI Extracellular solute-binding protein family 1 Length = 456 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 123/434 (28%), Positives = 202/434 (46%), Gaps = 29/434 (6%) Query: 43 KIQVRIALNDWTENLEVKNAIRQFNESNPDHIEIVMVNLSADTYNDMLNMLMTSGQGPDV 102 K ++ D ++ VK I FN++N D+IE+ +V + D ++ L+M + + PD+ Sbjct: 40 KTKITYWTGDRHDSEFVKETIDTFNKTNKDNIEVELV-IKGDDFDQALDMSFQTSEPPDI 98 Query: 103 FSVDNGWLATYVNKGYLTNLNAYLGPADLNRFPEWARDYAHSSLFKGGVYFMPSSIETVR 162 V + T+ KG+L ++ +L +FP + F+G Y +P+ T+R Sbjct: 99 IRVKENTIQTFYKKGFLAPIDEFLTDEMKEKFPL----MEDLNSFEGKRYSLPNYGTTMR 154 Query: 163 LIYNKQLFRSAGLDPEQPPVTFAEVKQAAARISRAGVGVNKYGFALAAGDSQDSLQTGLE 222 LIYNK+LF AG+ EQPP T E+ + A +I+ AG YGFA + +L Sbjct: 155 LIYNKELFAKAGI--EQPPTTLDELVETAKKITEAGKASGAYGFAQNFKNPSSALGRSAR 212 Query: 223 MSNTYSGV--YLYNYRTGRYNLSVYAPWLQLLLDMKAESSLYPGETLLKRDSALRQFADG 280 + SG + Y+++T RY+ S + P ++ +K + S+ PG L D QFA+G Sbjct: 213 VIAEVSGFGGFGYDFKTARYDFSGFKPIMEAFKQIKDDGSMLPGVESLDIDPLRAQFAEG 272 Query: 281 NIGMMYATSKDYVKLQEYMP-KDDWGVALPPVTSSASRGSGALMVIPHSPLAVNSSAPDQ 339 IGM + S + Q P K +W A PV S + +GA + LA++S + + Sbjct: 273 KIGMYLSFSAEAGVYQSQFPAKIEWAAA--PVPSIDGQFNGASGFLGGQWLAISSESEHK 330 Query: 340 EAAVKVWKFLQSEAFLNILFQQALALPVVDGITDLPGQVPGLGHFKEFYPTAEESIYPLP 399 EAA K ++ E+ L ++ + +V ++ + + P + F P + ++P+ Sbjct: 331 EAAWKFLTYMYDESILQQYQEKGFGISMVPSVSAVAAK-PEVKGIDGFLPNQYDGVWPVY 389 Query: 400 PQIMDQYDPNTVSVEPRDSGDRPRMQLYLQILSGGVSAGEGLRAESDRLNQMLDIAATGY 459 P TV V+ S D + ILSGG + + R N LD A Sbjct: 390 P---------TVPVQGMKSDD----AFFKYILSGG-DLDSIIDDLNTRYNAALDAAIASG 435 Query: 460 SFKHEEYIYPDFNP 473 K E DFNP Sbjct: 436 EVKAEP--MADFNP 447 >B1D7Q4.1 B1D7Q4_9BACL Extracellular solute-binding protein family 1 Length = 475 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 103/367 (28%), Positives = 182/367 (49%), Gaps = 22/367 (5%) Query: 47 RIALNDWTENLE----VKNAIRQFNESNPDHIEIVMVNLSADTYNDMLNMLMTSGQGPDV 102 ++ LN WTE+ ++ + +FNE+N D+IE+ + LS + YN +++ +S Q PD+ Sbjct: 56 KVKLNYWTEDRHDLTYIQEVVDRFNETNTDNIEVELKGLS-ENYNQSVDIAFSSKQAPDI 114 Query: 103 FSVDNGWLATYVNKGYLTNLNAYLGPADLNRFPEWARDYAHSSLFKGGVYFMPSSIETVR 162 +V KGYL L+ YL +F D S++ G +Y +P+ + R Sbjct: 115 IRTTPSNFIPFVKKGYLEPLDGYLNDEMKTKFQPALVD--KSNMMNGQIYSLPNYGYSSR 172 Query: 163 LIYNKQLFRSAGLDPEQPPVTFAEVKQAAARISRAGVGVNKYGFALAAGDSQDSLQTGLE 222 LIYN LF AG+ PP T ++ + A +++ AG + YGFA+ + +S + Sbjct: 173 LIYNVDLFEKAGI--TSPPTTLNDMVEVAKKLTEAGKDIGAYGFAINFKGADNSFEKAPR 230 Query: 223 MSNTYSGV--YLYNYRTGRYNLSVYAPWLQLLLDMKAESSLYPGETLLKRDSALRQFADG 280 SG+ Y Y+++TG+Y+ S + ++ MK + S+ PG L D QFA+G Sbjct: 231 SIAELSGLGGYGYDFKTGKYDFSGFTDIMKAFKQMKDDGSMLPGVEALDIDPLRAQFAEG 290 Query: 281 NIGMMYATSKD-YVKLQEYMPKDDWGVALPPVTSSASRG-SGALMVIPHSPLAVNSSAPD 338 IGM + S + YV ++ K +W ALPP + G +G P L+++S + Sbjct: 291 KIGMYLSISAEPYVYQTQFPTKVNWSAALPPTINGNIAGVAGYWKTGPW--LSISSQTKN 348 Query: 339 QEAAVKVWKFLQSEAFLNILFQQALA---LPVVDGITDLPGQVPGLGHFKEFYPTAEESI 395 ++ A +++ S+ L ++ LP + + P ++PG+ F PT + + Sbjct: 349 KKEAWTFLEYMYSDEVLKTYYEDGYGMSLLPEIVAQSKNP-EMPGVAG---FLPTQYDGL 404 Query: 396 YPLPPQI 402 +P+ P + Sbjct: 405 WPISPSV 411 >B3KEQ6.1 B3KEQ6_9BACI Extracellular solute-binding protein family 1 Length = 510 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 106/438 (24%), Positives = 201/438 (45%), Gaps = 30/438 (6%) Query: 44 IQVRIALNDWTENLEVKNAIRQFNESNPDHIEIVMVNLSADTYNDMLNMLMTSGQGPDVF 103 +Q++ +D + +K I +FNE+N D+I++ + +S + Y +++ +S Q PDV Sbjct: 95 VQLKYWTDDRHDQEYIKELINKFNETNGDNIQVELTVMS-ENYAQSVDIAFSSNQAPDVL 153 Query: 104 SVDNGWLATYVNKGYLTNLNAYLGPADLNRFPEWARDYAHSSLFKGGVYFMPSSIETVRL 163 + + + +V KGYL ++ YL +F D + F G VY + ++ T+RL Sbjct: 154 RLKSANTSGFVKKGYLAPIDEYLTDDLKAKFGSLLIDDVNR--FDGKVYSLANTGLTMRL 211 Query: 164 IYNKQLFRSAGLDPEQPPVTFAEVKQAAARISRAGVGVNKYGFALAAGDSQDSLQTGLEM 223 +YNK LF AG+ E PP + E+ + A +I+ G YGFAL + + + + Sbjct: 212 VYNKDLFAKAGI--ENPPKSLQEMVEDAKKITEVGKAEGIYGFALNFKNPKQAFDRSVRE 269 Query: 224 SNTYSGV--YLYNYRTGRYNLSVYAPWLQLLLDMKAESSLYPGETLLKRDSALRQFADGN 281 + SG ++ +TG+++ Y+ ++ M + S+ PG L D QFA G Sbjct: 270 ILSLSGYQGLGFDLKTGQFDFEPYSQVIEYFKQMHKDGSILPGAEALDIDPLRAQFAAGK 329 Query: 282 IGMMYATSKD-YVKLQEYMPKDDWGVALPPVTSSASRGSGALMVIPHSPLAVNSSAPDQE 340 IGM + S + V + ++ + +WG AL P +G+ + V + L +++ + ++E Sbjct: 330 IGMYLSFSTEPGVYMDQFPTEINWGGALAPTLDGEIKGTSEI-VSAGTWLGISAQSANKE 388 Query: 341 AAVKVWKFLQSEAFLNILFQQALALPVVDGITDLPGQVPGLGHFKEFYPTAEESIYPLPP 400 AA K +++ + L ++ + +V I + + P + + F +S++P P Sbjct: 389 AAWKFMQYMYGDEVLKTYHEKGFGIAIVPSIVE-QAKDPEINGMEGFLVGEHDSLWPASP 447 Query: 401 QIMDQYDPNTVSVEPRDSGDRPRMQLYLQILSGGVSAGEGLRAESDRLNQMLDIAATGYS 460 + P Y + E L+A ++ LN + A + Sbjct: 448 NVT------------------PEGSTYADAFFKYILTDEDLKAITEDLNTRYNAALSKAV 489 Query: 461 FKHEEYIYPD--FNPRAP 476 K E + P+ F+P P Sbjct: 490 EKGEVTVTPNPAFDPTKP 507 >C1XFR4.1 C1XFR4_MEIRU Carbohydrate ABC transporter substrate-binding protein, CUT1 family Length = 414 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 89/336 (26%), Positives = 145/336 (43%), Gaps = 29/336 (8%) Query: 52 DWTENLEVKNA-IRQFNESNPDHIEIVMVNLSADTYNDMLNMLMTSGQGPDVFSVDNGWL 110 D+ +E N I++F +NP I+++ D Y + + +GQGPDV ++ GWL Sbjct: 29 DFKSKVEAVNELIKKFEAANPG-IKVLHQTFPFDAYQQKVASSIPAGQGPDVVNLFYGWL 87 Query: 111 ATYVNKGYLTNLNAYLGPADLNRFPEWARDYAHSSLFKGGVYFMPSSIETVRLIYNKQLF 170 T+V GYL L A N F A ++ G +Y MP+++ ++ L YN+ L Sbjct: 88 PTWVKAGYLQPLPAEYTRVLDNEFSS----LAQAAKVGGRLYGMPTAVRSLALFYNRDLL 143 Query: 171 RSAGLDPEQPPVTFAEVKQAAARIS-RAGVGVNKYGFALAAGDSQDSLQTGLEMSNTYSG 229 +AG + PP T+ E AA+++ + G ++ G+A+A D QD + + G Sbjct: 144 NAAGF--KNPPKTWDEFLSIAAKLTVKDGNRFSQLGYAMAP-DGQDHHLVREVLVRQFGG 200 Query: 230 --------VYLYNYRTGRYNLSVYAPWLQLLLDMKAESSLYPGETLLKRDSALRQFADGN 281 LY G + Y W + + +PG RD+ F G Sbjct: 201 RPYSDDGRRVLYGDAAGLRAFTFYTDWFKKYNVGTLGNQFFPGNNAY-RDA----FIAGR 255 Query: 282 IGMMYATSKDYVKLQEYMPKDDWGVALPPVTSSASR--GSGALMVIPHSPLAVNSSAPDQ 339 +GM+ S ++ K +WGVA PV R G+ + +PLA + P Sbjct: 256 VGMIVDGSFAIGTIRS-GAKFNWGVAELPVEKVGGRKVNYGSFWMHGLTPLA---TGPKL 311 Query: 340 EAAVKVWKFLQSEAFLNILFQQALALPVVDGITDLP 375 A++K +FL SE ++ LP + P Sbjct: 312 AASLKFLEFLVSEETQRYWLEKVGELPARKSLIKDP 347 >A6UJ69.1 A6UJ69_SINMW Extracellular solute-binding protein family 1 Length = 410 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 144/312 (46%), Gaps = 24/312 (7%) Query: 48 IALNDWTENLEVK---NAIRQFNESNPDHIEIVMVNLSADTYNDMLNMLM---TSGQGPD 101 + + W+ + +++ N I+ FNE N + V ++D+++ M ++GQ PD Sbjct: 29 VTIRVWSLDRDIQPAPNLIKDFNELNSG----IKVEYRQIQFDDVVSEAMRAYSTGQAPD 84 Query: 102 VFSVDNGWLATYVNKGYLTNLNAYLGPADLNRFPEWARDYAHSSLFKGGVYFMPSSIETV 161 + +VDN A + ++G +L+ + + + + + + S + G Y +P + T+ Sbjct: 85 IIAVDNPEHALFASRGAFLDLSDMIAKSSVVKPENYFKGPLASVTWDGKYYGIPKATNTI 144 Query: 162 RLIYNKQLFRSAGLDPEQPPVTFAEVKQAAARISRAGVGVNKYGFALAAGDSQDSLQTGL 221 L YNK +F++ GLDP +PP T+ E+ +AA ++S V YG +A +++ L Sbjct: 145 ALYYNKDMFKAKGLDPNKPPQTWDELVEAARKLSDPAQNV--YGITFSAKANEEGTFQFL 202 Query: 222 EMSNTYSGVY-LYNYRTGRYNLSVYAPWLQLLLDMKAESSLYPGETLLKRDSALRQFADG 280 + G Y N L V+ + ++D K S P + A F G Sbjct: 203 PWAQMAGGGYDNINSEGAVKALDVW----KTIIDEKLAS---PDTLTRSQWDATGTFNSG 255 Query: 281 NIGMMYATSKDYVKLQEYMPKDDWGVALPPVTSSASRGSGALMVIPHSPLAVNSSAPDQE 340 N M + + ++ E K DWGVAL PV + + S A+ + A N+ P E Sbjct: 256 NAAMAISGPWELDRMLEEA-KFDWGVALMPVPQAGAERSSAMGDFNWAIFA-NTEHP--E 311 Query: 341 AAVKVWKFLQSE 352 A KV ++ S+ Sbjct: 312 EAFKVLEYFVSQ 323 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,956,663,648 Number of extensions: 123786316 Number of successful extensions: 305279 Number of sequences better than 1.0e-05: 582 Number of HSP's gapped: 305419 Number of HSP's successfully gapped: 582 Length of query: 491 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 351 Effective length of database: 1,741,754,103 Effective search space: 611355690153 Effective search space used: 611355690153 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)