BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0021.p (534 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K496.1 B3K496_9BACI Response regulator receiver 369 e-100 B1D500.1 B1D500_9BACL Two component transcriptional regulator, A... 355 6e-96 A4XMI8.1 A4XMI8_CALS8 Two component transcriptional regulator, A... 241 1e-61 C0FZA2.1 C0FZA2_9FIRM Putative uncharacterized protein 194 1e-47 A5ZM33.1 A5ZM33_9FIRM Putative uncharacterized protein 161 2e-37 >B3K496.1 B3K496_9BACI Response regulator receiver Length = 527 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 205/526 (38%), Positives = 314/526 (59%), Gaps = 9/526 (1%) Query: 3 RNLLIVDDEENIRLGIRAMLEREYPGMYRYFFAEDGEEALQQLNQAAFDIMMTDIRMPVM 62 R+L+IVDDE+NIR G++ M+ERE+P Y A G+EAL+ N+ DI++TDIRMPVM Sbjct: 2 RSLMIVDDEKNIRYGLKTMIEREFPDQYEIRLAAQGQEALEAYNEQPADIVITDIRMPVM 61 Query: 63 DGITLIGRVQQLEH----RPVVVIISGYDDFEYAKQAIRFGVRDYLLKPIVRSELRGTFS 118 DGI LI + + E +PV +I+SGYDDFEYAK AIR+ V++YLLKPI R EL Sbjct: 62 DGIRLIEALAEREGPLGVKPVFLILSGYDDFEYAKAAIRYQVKEYLLKPIRRDELFAALR 121 Query: 119 RLEQALKREQDINGMLSKATQREQDYRQNEMYYILMNIEIAGPELSERLDRAGLEDLQAG 178 + E+ L R+ D++ ++ + Q + + + +L + E G + Sbjct: 122 KTEEVLIRQADLHDRMAASDAYLQQLQTHRLKELLERPQGVNGEPEAAAAEIGFDSFVKP 181 Query: 179 YVIGLIQEAEANGRTEGGGVLYSRIHEFLHTEALAEEYHFLDKEGRSLVVIRDEQRLGKL 238 + + +++ +G + L I + FLD +GR +++ + + KL Sbjct: 182 FRVAVMKYKYEDGNSMNKDELKQLIDNMTASVEGRINACFLDGKGRVVLIGSPDGQFEKL 241 Query: 239 LEYLGQDRLLACQIGSSERMDKAEQFKTAYAQALKALRYFFLKSSTGLIRYSQIKDKPRN 298 + + +G S + + E ++ Y QAL AL Y F+ + L+ + I+ + Sbjct: 242 ARQFTEREMDGLFVGISRKGFRFEDIRSCYNQALTALSYTFIHPNVKLMSHDDIQGELNT 301 Query: 299 FEIPTEEIVKIGNMLGTGREQEMQALLSQVLDYRKMLLYDISYMEEISTAINELIFDKAF 358 + +P E I K+GNMLGT RE+E++ALL + M I Y+E +S INE + D+ F Sbjct: 302 YPVPEENIRKLGNMLGTEREREIKALLLDIFHIDDMPHVAIDYLEFVSKRINERVLDEVF 361 Query: 359 NVYGKEAVEIIKVYRQIGYLYNSPHFQDYYHGVENLLNRMNDFIKGIKSAHLNQREMKAA 418 VYG VE++K+YR++G + N HF Y+ +E+LL +N+++KGI+SAH E+KAA Sbjct: 362 RVYGDSMVEVLKLYRKVGTMDNYRHFHTYFRNLEHLLLHVNEYVKGIRSAHSEHSEIKAA 421 Query: 419 LLFIEQNYNRSDFNLAMVSNHVSFNYSYFSSAFKEYMGMSFSQYIKKLRLVKAKELLENS 478 + ++E+NY+R N+AMVSN+VS NYSYFS AFK + G +F Y+KKLR+ KAK+LL++ Sbjct: 422 VSYMEENYHRP-LNMAMVSNYVSLNYSYFSEAFKAHTGENFVVYLKKLRITKAKDLLQDG 480 Query: 479 AYKVYEVSAKVGFENPKHFNKVFREAEGISPLEYRMA----AGLKQ 520 K+ ++ VGFEN K F++VF+E EGISP EYR+ AGL+Q Sbjct: 481 DMKLADIGKAVGFENTKQFSRVFKELEGISPHEYRIKVQTDAGLQQ 526 >B1D500.1 B1D500_9BACL Two component transcriptional regulator, AraC family Length = 520 Score = 355 bits (911), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 207/519 (39%), Positives = 318/519 (61%), Gaps = 22/519 (4%) Query: 5 LLIVDDEENIRLGIRAMLEREYPGMYRYFFAEDGEEALQQLNQAAFDIMMTDIRMPVMDG 64 LLIVDDE+ IR G+++++ER++P + Y FAE+G+EAL+ L Q DI++TDIRMP+MDG Sbjct: 4 LLIVDDEKIIRRGLQSVIERQFPDRFNYRFAENGQEALELLGQEPADILITDIRMPIMDG 63 Query: 65 ITLIGRVQQLEHRPVVVIISGYDDFEYAKQAIRFGVRDYLLKPIVRSELRGTFSRLEQAL 124 I L+ ++Q + +P VV++SGY+DF YA++ IR+ V+DYL+KP+VR EL RL + Sbjct: 64 IELLEQLQDHQVKPEVVLLSGYNDFAYAQKGIRYAVKDYLVKPVVREELFAVMERLILDI 123 Query: 125 K-REQDINGMLSKATQREQDYRQNEMYYILMNIEIAGPELSERLDRAGLEDLQAGYVIGL 183 + RE+ + KA + + + L ++ +L +AGL+ L AGY +GL Sbjct: 124 RVREEQAD----KAGENVSLFAAELVTLHLTQMDAGDALTPNKLKQAGLKWLDAGYALGL 179 Query: 184 IQEAEANGRTEGGGVLYSR--IHEFLH--TEALAEEYHFLDKEGRSLVVIRDEQRLGKLL 239 I + + V R I E L TE L D +G ++++ RD +L Sbjct: 180 IMRRDGGSQAGSTDVATFRNQIAELLQGQTEWLLTR----DGKGGTIMLARDSVLFCRLA 235 Query: 240 EYLGQDRLLA----CQIGSSERMDKAEQFKTAYAQALKALRYFFLKSSTGLIRYSQIKDK 295 E Q RL +I +S+ + EQ + AY+QA + L+Y L S ++ + + ++ Sbjct: 236 E---QWRLHVYGSQLRIATSDSVQGIEQIRWAYSQAKQTLKYGILLSERDVLDNTILSER 292 Query: 296 PRNFEIPTEEIVKIGNMLGTGREQEMQALLSQVLDYRKMLLYDISYMEEISTAINELIFD 355 +P E I +I N+LG GR E++ LL+Q+LD R + +I Y+E IS NE +FD Sbjct: 293 NEKHAVPVELIQRILNLLGMGRGDEIKQLLNQILDVRIISSCEIGYLERISQLFNEELFD 352 Query: 356 KAFNVYGKEAVEIIKVYRQIGYLYNSPHFQDYYHGVENLLNRMNDFIKGIK-SAHLNQRE 414 K F++YG + ++ ++ Y Q+G++ N HF DYY VE L++ ++ FI+ + A Q Sbjct: 353 KLFSIYGYKVLDQLRTYAQVGHIGNFDHFGDYYTAVEQLIDSLDRFIQNRRVQAPTEQNT 412 Query: 415 MKAALLFIEQNYNRSDFNLAMVSNHVSFNYSYFSSAFKEYMGMSFSQYIKKLRLVKAKEL 474 M+ L +++ +Y D N+A+VSNH S NYSYFS AF+EY G SFS Y+++LRL KAKEL Sbjct: 413 MQKVLNYLQTHYA-DDLNMAVVSNHFSLNYSYFSYAFQEYSGESFSNYVRRLRLDKAKEL 471 Query: 475 LENSAYKVYEVSAKVGFENPKHFNKVFREAEGISPLEYR 513 L +S KVYE+S +VGFEN KHF ++F++ EGI+ LE+R Sbjct: 472 LVHSDLKVYEISDQVGFENVKHFTRIFKDTEGITALEFR 510 >A4XMI8.1 A4XMI8_CALS8 Two component transcriptional regulator, AraC family Length = 516 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 160/524 (30%), Positives = 288/524 (54%), Gaps = 27/524 (5%) Query: 3 RNLLIVDDEENIRLGIRAMLEREYPGMYRYFFAEDGEEALQQLNQAAFDIMMTDIRMPVM 62 R +LIVDDE+ IR GI+ +LE+ A +G+EAL L FD+++ DIR+P++ Sbjct: 2 RKVLIVDDEKLIRKGIKTILEKSNLEFKDIKEASNGKEALDLLFSEQFDLLIIDIRLPLL 61 Query: 63 DGITLIGRVQQLEHRPVVVIISGYDDFEYAKQAIRFGVRDYLLKPIVRSELRGTFSRLEQ 122 DGI++I ++Q + +P +V+ISGYD+F YAK+ + +G R Y+LKPI +SEL ++++Q Sbjct: 62 DGISVIKKIQNMPQKPKIVVISGYDEFSYAKECLEYGARGYILKPIDKSELLDLLAKIQQ 121 Query: 123 ALKREQDINGMLSKATQREQDYRQNEMYYILMNIEIAGPELSERLDRAGLE-DLQA-GYV 180 L+RE+D + + + E+ IL++ + E+ ++L+ G++ ++Q + Sbjct: 122 ELEREEDTYKLFKMQNILKSRMVEVELNNILLS-NLTQTEIKKKLETLGIDSEIQVYTFY 180 Query: 181 IGLIQEAEANGRTEGGGVLYSRIHEFLHTEAL------AEEYHFLDKEGRSLVV---IRD 231 I + ++ E + YS + E L + A +D E LV+ + + Sbjct: 181 IFITKDREED---------YSIVSEDLKNNLIKLFPDGAFNIALIDYEKNILVISDTLIE 231 Query: 232 EQRLGKLLEYLGQDRLLACQIGSSERMDKAEQFKTAYAQALKALRYFFLKSSTGLIRYSQ 291 R+ L + + Q + IG E K + ++ K Y F+ +S + YS Sbjct: 232 PLRIYDLCKGVFQKDVY---IGIYNEKQPLENLKLLHGRSKKTALYAFV-ASKSIEYYSN 287 Query: 292 IKDKPRNFEIPTEEIVKIGNMLGTGREQEMQALLSQVLDYRKMLLYDISYMEEISTAINE 351 +KD+ E I K+ ++ G+++E + + + ++ + I +++I+T + Sbjct: 288 VKDRENIACSKDESIHKLKELILAGKQKEALSCVENIFNHEFLKNCSIESIQDIATKLYR 347 Query: 352 LIFDKAFNVYGKEAVEIIKVYRQIGYLYNSPHFQDYYHGVENLLNRMNDFIKGIKSAHLN 411 I ++ + ++ +++ Y + + N + ++Y ++N + I +K Sbjct: 348 EIIERFESQVPRKILDM-SSYLLLKNILNFSNMKEYIEMLKNFVYEATSMIAALKGILTV 406 Query: 412 QREMKAALLFIEQNYNRSDFNLAMVSNHVSFNYSYFSSAFKEYMGMSFSQYIKKLRLVKA 471 + E++ A+ FI +NY + D N+AMV+NHVS NY YFS+ FKE GMSF Y+ K+R+ KA Sbjct: 407 KDEIEEAIKFINENYYK-DINMAMVANHVSLNYYYFSTIFKERTGMSFLDYLNKVRIDKA 465 Query: 472 KELLENSAYKVYEVSAKVGFENPKHFNKVFREAEGISPLEYRMA 515 KELL N+ K++E+S KVG++NPKHF ++F+E G++P EYR A Sbjct: 466 KELLANTNLKIWEISEKVGYKNPKHFARIFKEITGLTPNEYRDA 509 >C0FZA2.1 C0FZA2_9FIRM Putative uncharacterized protein Length = 491 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 153/545 (28%), Positives = 263/545 (48%), Gaps = 81/545 (14%) Query: 3 RNLLIVDDEENIRLGIRAMLEREYPGMYRYFFAEDGEEALQQLNQAAFDIMMTDIRMPVM 62 + +LIV+DE+ IR GI+ M+ R + +GE AL+ L + D+M TDIRMP M Sbjct: 2 KTVLIVEDEKMIRQGIKTMIMRSGVPIETIMECNNGETALEILKEQEIDVMFTDIRMPKM 61 Query: 63 DGITLIGRVQQLEHRPVVVIISGYDDFEYAKQAIRFGVRDYLLKPIVRSELRGTFSRLEQ 122 DGI L+ ++Q LEH P+ V ISGYDDF YA + +R GVR+Y+LKPI R ++ +L Sbjct: 62 DGIELVQKMQSLEHIPLTVAISGYDDFAYAVEMLRNGVREYILKPIEREKITEILKKL-- 119 Query: 123 ALKREQDINGMLSKATQREQDYRQ---NEMYYILMNIEIAGPELSERLDRAGLEDLQAGY 179 N + ++E++ ++ +M +++++ EI+G E ++ + G Sbjct: 120 --------NAEIESRKEKEENNQKIGYQQMRHLMLSDEISGEE-QRTIESQYADHFYTGN 170 Query: 180 VIGLIQEAEANGRTEGGGVLYSRIHEFLHTEALAEEYHFLDKEGRSLVVIRDEQRLGKLL 239 Q G E + Y F+ + + I + L LL Sbjct: 171 YYVCCQNQVKRG------------------ELSDDNYIFMKNMNDNDIFIVPAENLSLLL 212 Query: 240 EYLGQDRLLACQIGSSERMDKAEQFKTAYAQALKALRYFFLKSSTGLIRYSQIKDKPRNF 299 + QD IG S E + AYA+++ + F+++ +Y ++K Sbjct: 213 KNELQDGY----IGISAAHCGLESIRQAYAESVMMRKKAFVRNKVEA-QYGVFQEK---- 263 Query: 300 EIP----------TEEIVKIG--NMLGTGREQEMQALLSQVLDYRKMLLYDISYMEEIST 347 IP TEE +I ++GT +++ Q Y++ + Sbjct: 264 -IPEGLITEAAKLTEEAARIQRVQLIGTDHTDDLEKSFHQ-------FFYEVK-----NG 310 Query: 348 AINELIFDKAFNVYGKEAVEIIKVYRQ-----------IGYLYNSPHFQDYYHGVENLLN 396 I+E +F+ + E+ K Y+ +++ Y V + Sbjct: 311 RIDEAVFESCMKDF---FTEVEKTYQNALETEGELLLECKEIWSENCIDSYEDKVMEFVL 367 Query: 397 RMNDFIKGIKSAHLNQREMKAALLFIEQNYNRSDFNLAMVSNHVSFNYSYFSSAFKEYMG 456 ++++ I + N +++K A+ +IE+NY + D N+A+VSN++S NYS FS +FK+Y G Sbjct: 368 QLHEKINSSYDQNKNVQKIKMAVDYIEENYAK-DLNMAVVSNYISMNYSLFSYSFKQYTG 426 Query: 457 MSFSQYIKKLRLVKAKELLENSAYKVYEVSAKVGFENPKHFNKVFREAEGISPLEYRMAA 516 +F Y+K++R+ +AK+LL + K+ E+S VG++N KHF K+F+ G+SP EYR A Sbjct: 427 SNFVNYLKEIRMREAKKLLTETDMKIIEISQAVGYDNEKHFMKIFKATCGVSPTEYRHNA 486 Query: 517 GLKQN 521 L ++ Sbjct: 487 YLSKS 491 >A5ZM33.1 A5ZM33_9FIRM Putative uncharacterized protein Length = 539 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 136/541 (25%), Positives = 274/541 (50%), Gaps = 44/541 (8%) Query: 5 LLIVDDEENIRLGIRAMLEREYPGMYRYFF--AEDGEEALQQLNQAAFDIMMTDIRMPVM 62 +L+VDDE +R I+ ++ + GM E+G+EA + + + DI++TDI MP M Sbjct: 4 ILLVDDEILVRDAIKENID--WKGMDCELVGDCENGKEAAEFVKEHPVDIVLTDILMPYM 61 Query: 63 DGITLIGRVQQLEHRPVVVIISGYDDFEYAKQAIRFGVRDYLLKPIVRSELRGTFSRLEQ 122 DG+ L + V+VI SG+ +FEYAK+AI++GV +YLLKP+ EL G ++++ Sbjct: 62 DGMELSNFLHDNYPEIVIVIFSGFGEFEYAKKAIQYGVSEYLLKPVTAMELTGVIEKMKK 121 Query: 123 ALKREQDINGMLSKATQREQDYRQNEMYYILMNIEI---AGPELS---ERLDRAGLEDLQ 176 +++++ + Q ++YR+N+ NIE +++ ERL G++ Sbjct: 122 KVEQQRLEKSKMDALAQNSEEYRKNKQIIRSKNIEALVNCTTDVNASIERLAEMGIDISA 181 Query: 177 AGYVIGLIQ--------EAEANGRTEG---GGVLYSRIHEFLHTEALAEEYH-------- 217 A Y + + + + R E VL++ E + E Y Sbjct: 182 ASYRVAIFDIDLYSGMYQLDTEKRQESALMAFVLFNISDEIVTREEAGIAYQEGNNRVGI 241 Query: 218 -FLDKEGRSLVVIRDEQRLGKLLEYLGQDRLLACQIGSSERMDKAEQFKTAYAQALKALR 276 F +K R+ R ++ ++ E + +G + + K E+ ++ A + L+ Sbjct: 242 LFQEKWSRNFTS-RTKEICHEIQEKTKEVMGFDVSMGIGKWVKKPEELIQSHDMAAQTLQ 300 Query: 277 YFFLKSSTGLIRYSQIKDKPRNFEIPTE-EIVKIGNMLGTGREQEMQALLSQVLDYRKML 335 Y +L LI ++++ EI E ++ ++ + TG+++++ +L ++ D + Sbjct: 301 YRYLLGGNLLI---DMEEQHPVQEIAIEDDLAELKEAMKTGQKEQVYQILIKIEDSIRPG 357 Query: 336 LYDIS----YMEEISTAINELIFDKAFNVYGKEAVEIIKVYRQIGYLYNSPHFQDYYHGV 391 Y S Y++++ ++ D + ++ + + ++ RQI + F+D V Sbjct: 358 TYGKSRACMYLQQVIRTMDNACEDVSADM-DRIREDRDELLRQIT---DQKFFEDACKVV 413 Query: 392 ENLLNRMNDFIKGIKSAHLNQREMKAALLFIEQNYNRSDFNLAMVSNHVSFNYSYFSSAF 451 + +R+ + + + ++ ++R+ + A+ +I++NY D +L + ++++ + SYFS+ F Sbjct: 414 QKHTDRIFEILSELNTSS-SKRQARLAIDYIQKNYMDPDLSLNSICSYLNISTSYFSTIF 472 Query: 452 KEYMGMSFSQYIKKLRLVKAKELLENSAYKVYEVSAKVGFENPKHFNKVFREAEGISPLE 511 K+ G +F++ + + R+ KAKELLEN+ K YE++ KVGF +P +F F++ G +P E Sbjct: 473 KDETGETFTEVLIRTRMEKAKELLENTTLKNYEIAEKVGFSDPHYFGISFKKMTGCTPTE 532 Query: 512 Y 512 Y Sbjct: 533 Y 533 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,930,184,682 Number of extensions: 120219799 Number of successful extensions: 440969 Number of sequences better than 1.0e-05: 10306 Number of HSP's gapped: 452910 Number of HSP's successfully gapped: 10883 Length of query: 534 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 393 Effective length of database: 1,732,333,088 Effective search space: 680806903584 Effective search space used: 680806903584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)