BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0017.p (284 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K493.1 B3K493_9BACI Binding-protein-dependent transport system... 422 e-116 A4XMJ1.1 A4XMJ1_CALS8 Binding-protein-dependent transport system... 383 e-105 B9MLN8.1 B9MLN8_ANATD Binding-protein-dependent transport system... 382 e-104 A9KLB8.1 A9KLB8_CLOPH Binding-protein-dependent transport system... 343 1e-92 B3K3C7.1 B3K3C7_9BACI Binding-protein-dependent transport system... 278 4e-73 >B3K493.1 B3K493_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 196/282 (69%), Positives = 237/282 (84%) Query: 3 FDIFNNLLMLLVCFATLYPVWYVLVNSFNEGMDAMLGNIYWWPRVFSLDNYRAVFNNNGI 62 FDIFNN ML+VCF T+YP+WYVLVN+FN+G DAM G IYWWPR+FSL+N+ AVF ++GI Sbjct: 12 FDIFNNFGMLIVCFLTIYPIWYVLVNAFNDGQDAMRGGIYWWPRMFSLENFSAVFQSSGI 71 Query: 63 MMAMGVTVAKTVVGTLIHVFFTAMVAYALCSQELIGRKVYMIMGTITLFFGGGLIPTYLL 122 M AMG+TVAKTV+G IHV FTAMVAYA + LIG K Y+++GT+T+FF GGLIPTYLL Sbjct: 72 MTAMGITVAKTVIGVFIHVLFTAMVAYAFSRKGLIGGKFYILLGTVTMFFTGGLIPTYLL 131 Query: 123 IRDLGLLDNFWVYILPAAFSFYDLIIFMSFFREIPKGLEEAAKIDGANELKIFFRVIIPI 182 I+DL +LD+F VYI+P FSF+DLIIFM+FFREIP GLEEAAKIDGAN+ IF RV++P+ Sbjct: 132 IKDLNMLDSFLVYIIPFMFSFFDLIIFMTFFREIPDGLEEAAKIDGANDWSIFLRVVLPV 191 Query: 183 SMPVVATIALFHGVYQWNDYFAGVIYINNSSLQPIQTYLYRVVAESSSNQMVSAMAGTIQ 242 SMPV+ATIALFHGV+QWNDYF GVIYINN+ LQPIQTYLY+VVA+SSSNQM++ + G + Sbjct: 192 SMPVIATIALFHGVFQWNDYFTGVIYINNTDLQPIQTYLYKVVAQSSSNQMMAQVPGGVA 251 Query: 243 KSVTSQSVKLAXXXXXXXXXXXXYPFLQKYFVKGMMIGSIKG 284 K+VTSQS+K+A YPFLQ+YFVKGMMIGSIKG Sbjct: 252 KTVTSQSIKMATMVVTTAPIVFVYPFLQRYFVKGMMIGSIKG 293 >A4XMJ1.1 A4XMJ1_CALS8 Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust. Identities = 182/283 (64%), Positives = 228/283 (80%), Gaps = 1/283 (0%) Query: 3 FDIFNNLLMLLVCFATLYPVWYVLVNSFNEGMDAMLGNIYWWPRVFSLDNYRAVFNNNGI 62 FDIFN LML++CF TLYP+WY++V SFN+G DAMLG IY+WPR F+LDNY VF+N+ I Sbjct: 12 FDIFNITLMLIICFVTLYPIWYIIVYSFNDGKDAMLGGIYFWPRKFTLDNYITVFSNSDI 71 Query: 63 MMAMGVTVAKTVVGTLIHVFFTAMVAYALCSQELIGRKVYMIMGTITLFFGGGLIPTYLL 122 A VT+A+TV+ T +HVFFTAMVAYA +ELIGRK+YM MGTITLFFGGGLIP +LL Sbjct: 72 TTAFMVTIARTVITTTLHVFFTAMVAYAFMKKELIGRKIYMTMGTITLFFGGGLIPYFLL 131 Query: 123 IRDLGLLDNFWVYILPAAFSFYDLIIFMSFFREIPKGLEEAAKIDGANELKIFFRVIIPI 182 I+ LGL +NF VY++P F+FY+LIIF +FFRE+P LEE+AKIDGAN+ IF RVI+P+ Sbjct: 132 IKSLGLYNNFLVYVIPGMFNFYNLIIFQAFFRELPVELEESAKIDGANDFTIFTRVILPL 191 Query: 183 SMPVVATIALFHGVYQWNDYFAGVIYINNSSLQPIQTYLYRVVAESSSNQMVS-AMAGTI 241 S PV+ATIALF GVY WNDYF GVI+INN LQPIQT+LY+V+AE++SNQM++ A G + Sbjct: 192 STPVLATIALFVGVYNWNDYFMGVIFINNPKLQPIQTFLYKVIAETTSNQMLANAPGGIM 251 Query: 242 QKSVTSQSVKLAXXXXXXXXXXXXYPFLQKYFVKGMMIGSIKG 284 ++VTSQS+K+A YPFLQKYFVKG++IG+IKG Sbjct: 252 TRNVTSQSIKMATMVVTTLPIVCVYPFLQKYFVKGLLIGAIKG 294 >B9MLN8.1 B9MLN8_ANATD Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/283 (63%), Positives = 227/283 (80%), Gaps = 1/283 (0%) Query: 3 FDIFNNLLMLLVCFATLYPVWYVLVNSFNEGMDAMLGNIYWWPRVFSLDNYRAVFNNNGI 62 FDIFN LML++CF TLYP+WY++V SFNEG DAMLG IY+WPR F+LDNY+ VF+N+ I Sbjct: 12 FDIFNITLMLIICFLTLYPIWYIIVYSFNEGKDAMLGGIYFWPRKFTLDNYKTVFSNSDI 71 Query: 63 MMAMGVTVAKTVVGTLIHVFFTAMVAYALCSQELIGRKVYMIMGTITLFFGGGLIPTYLL 122 A VTVA+TV+ T +HVFFTAMVAYA +EL+GRK+YM MGTITLFFGGGLIP +LL Sbjct: 72 TTAFMVTVARTVITTTLHVFFTAMVAYAFLRKELLGRKIYMAMGTITLFFGGGLIPYFLL 131 Query: 123 IRDLGLLDNFWVYILPAAFSFYDLIIFMSFFREIPKGLEEAAKIDGANELKIFFRVIIPI 182 I+ LGL + FWVY++P F+FY+LIIF +FFRE+P LEE+AKIDGAN+ IF R+I+P+ Sbjct: 132 IKSLGLYNTFWVYVIPGMFNFYNLIIFQAFFRELPIELEESAKIDGANDFIIFTRIILPL 191 Query: 183 SMPVVATIALFHGVYQWNDYFAGVIYINNSSLQPIQTYLYRVVAESSSNQMVS-AMAGTI 241 S PV+ATIALF GVY WNDYF GVI+INN LQPIQT+LY+V+A+ +SNQM++ A G Sbjct: 192 STPVLATIALFVGVYNWNDYFMGVIFINNPKLQPIQTFLYKVIAQVTSNQMLAYAPGGIA 251 Query: 242 QKSVTSQSVKLAXXXXXXXXXXXXYPFLQKYFVKGMMIGSIKG 284 ++VTSQS+K+A YPFLQKYFVKG++IG+IKG Sbjct: 252 TRNVTSQSLKMATMVITTLPIVCVYPFLQKYFVKGLLIGAIKG 294 >A9KLB8.1 A9KLB8_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 167/284 (58%), Positives = 220/284 (77%), Gaps = 3/284 (1%) Query: 3 FDIFNNLLMLLVCFATLYPVWYVLVNSFNEGMDAMLGNIYWWPRVFSLDNYRAVFNNNGI 62 FDI N +LML +CF +YP+WYV+VNSFN+ DA++G IYWWPR FSL NY+ VF++N + Sbjct: 18 FDILNTILMLFICFVCIYPIWYVIVNSFNDANDALMGGIYWWPRQFSLQNYKTVFSDNSV 77 Query: 63 MMAMGVTVAKTVVGTLIHVFFTAMVAYALCSQELIGRKVYMIMGTITLFFGGGLIPTYLL 122 + A +T+AKT++GT ++V FTAMVAY L + LIGRK YM +GTIT+FF GGLIPT+LL Sbjct: 78 LQAFKITIAKTLIGTTVNVLFTAMVAYPLSKKYLIGRKFYMAIGTITMFFSGGLIPTFLL 137 Query: 123 IRDLGLLDNFWVYILPAAFSFYDLIIFMSFFREIPKGLEEAAKIDGANELKIFFRVIIPI 182 + LGLL+NFWVY++PAAF+F++L+I ++FFREIP LEE+AKIDGAN+ IF +VI+P+ Sbjct: 138 FKGLGLLNNFWVYVIPAAFNFFNLLIMINFFREIPDALEESAKIDGANDFTIFRKVILPL 197 Query: 183 SMPVVATIALFHGVYQWNDYFAGVIYI-NNSSLQPIQTYLYRVVAESSSNQM--VSAMAG 239 S PV+ATIALF GV QWNDYF G++YI +N SL+PIQTYLYR+VA+ S+QM + + Sbjct: 198 SKPVLATIALFAGVGQWNDYFGGLMYITDNRSLEPIQTYLYRLVAQVQSSQMASSISASN 257 Query: 240 TIQKSVTSQSVKLAXXXXXXXXXXXXYPFLQKYFVKGMMIGSIK 283 K TS ++KLA YPFLQKYF+KGMMIG++K Sbjct: 258 ISAKDSTSTAIKLAAMVITTLPICCVYPFLQKYFIKGMMIGAVK 301 >B3K3C7.1 B3K3C7_9BACI Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 278 bits (711), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 132/281 (46%), Positives = 188/281 (66%), Gaps = 2/281 (0%) Query: 3 FDIFNNLLMLLVCFATLYPVWYVLVNSFNEGMDAMLGNIYWWPRVFSLDNYRAVFNNNGI 62 FD N +L++ + P+W V+V+SF+ G G +WP FSL+NY+AVF + I Sbjct: 15 FDTINIILLVTFTIIIVVPLWNVVVSSFSSGRSLAEGGFIFWPTEFSLENYQAVFRDANI 74 Query: 63 MMAMGVTVAKTVVGTLIHVFFTAMVAYALCSQELIGRKVYMIMGTITLFFGGGLIPTYLL 122 A ++VAKTV+G + HVFF AMV Y L + + GRK Y+ MG +T+FF GG+IPTY+L Sbjct: 75 WNAFFISVAKTVIGVITHVFFCAMVGYGLSKKYVRGRKFYVAMGVVTMFFSGGMIPTYML 134 Query: 123 IRDLGLLDNFWVYILPAAFSFYDLIIFMSFFREIPKGLEEAAKIDGANELKIFFRVIIPI 182 I+DLGLL++FWVYI+PA SFYD+II M+FFR +P LEE+AKIDG + +IF + IP+ Sbjct: 135 IKDLGLLNSFWVYIIPALLSFYDVIILMNFFRNVPDSLEESAKIDGGGDWRIFLSIFIPL 194 Query: 183 SMPVVATIALFHGVYQWNDYFAGVIYINNSSLQPIQTYLYRVVAESSSNQMVSAMAGTIQ 242 SMP +ATIALF+GV QWND+ +YI + SL P+Q LY ++ +S + M + G++ Sbjct: 195 SMPAMATIALFNGVGQWNDFMTTKLYITDQSLYPLQMMLYEIIVQSQTQSMQN--IGSVA 252 Query: 243 KSVTSQSVKLAXXXXXXXXXXXXYPFLQKYFVKGMMIGSIK 283 T++ V+LA YP LQ+YF+ GMM+G++K Sbjct: 253 IQTTTKGVQLATIVVTTLPIVVMYPILQRYFISGMMLGAVK 293 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.143 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,468,236,546 Number of extensions: 58446862 Number of successful extensions: 210095 Number of sequences better than 1.0e-05: 5581 Number of HSP's gapped: 204005 Number of HSP's successfully gapped: 5581 Length of query: 284 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 150 Effective length of database: 1,798,280,193 Effective search space: 269742028950 Effective search space used: 269742028950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)