BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0016.p (318 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K492.1 B3K492_9BACI Binding-protein-dependent transport system... 454 e-126 B9MLN7.1 B9MLN7_ANATD Binding-protein-dependent transport system... 402 e-110 A4XMJ2.1 A4XMJ2_CALS8 Binding-protein-dependent transport system... 398 e-109 A9KLB7.1 A9KLB7_CLOPH Binding-protein-dependent transport system... 376 e-102 Q835Y6.1 Q835Y6_ENTFA ABC transporter, permease protein 311 6e-83 >B3K492.1 B3K492_9BACI Binding-protein-dependent transport systems inner membrane component Length = 331 Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust. Identities = 214/323 (66%), Positives = 270/323 (83%), Gaps = 8/323 (2%) Query: 2 KAGVEAAADPGI------NQKKWGILRRMYRQRYLQIMALLGVAWMIVFNYFPMYGIVIA 55 + GV + +P + ++K+W LR++Y QR+LQIMALLGV WMI+FNY PMYG++IA Sbjct: 11 ETGVGPSMEPSVQDKRKLDRKRW--LRKLYGQRHLQIMALLGVVWMIIFNYIPMYGVIIA 68 Query: 56 FKNYDIIGSIGSAPWAGLEHFREFFEDENLGYVVKNTLGISALRLLIGFPLPILFAILLN 115 FK ++I+ SIG APW GL HF+EFF DE+ V++NTLGIS L+L IGFPLPI+FA+ LN Sbjct: 69 FKEFNIVKSIGEAPWVGLAHFKEFFSDEDFTNVMRNTLGISLLKLFIGFPLPIIFALFLN 128 Query: 116 EMRSVRFKKSVQTISYLPYFLSWVILGGILTTWLADVGIINHLLMKLHLIHEPVNFLAEP 175 E+RSVR+K+++QTISYLP+FLSWVILGGIL TWLAD+GIIN++L+ LH+I EP+ +LAEP Sbjct: 129 EIRSVRYKRTIQTISYLPHFLSWVILGGILMTWLADIGIINNILLALHIIDEPITYLAEP 188 Query: 176 KHFWGIAVISSIWKELGWSAIIYLAAISGISPELYEAAKIDGAGRFQRIKSITLPSIAGT 235 K+FWGI + S IWKELGWSAIIYLAAI+ ISPE+YEA+ IDGAGRFQ++ ITLPSI T Sbjct: 189 KYFWGIIITSDIWKELGWSAIIYLAAIASISPEMYEASTIDGAGRFQKMWYITLPSIKST 248 Query: 236 VSILFILAVSGILNSNFDQIMVLRNSLNESASSVIDIYIYQTGLQNARFSYSTAVGLVKS 295 +SILFILAV G+LNSNFDQI+VLRNSLNESAS+VIDI++Y TG+QN R+SY+ AV L KS Sbjct: 249 ISILFILAVGGVLNSNFDQILVLRNSLNESASNVIDIFVYHTGMQNGRYSYAQAVALFKS 308 Query: 296 VIAXXXXXISNSVTKRINNTSLF 318 VIA I+N VTK++N+TSLF Sbjct: 309 VIAIILLLIANRVTKKLNDTSLF 331 >B9MLN7.1 B9MLN7_ANATD Binding-protein-dependent transport systems inner membrane component Length = 318 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/318 (59%), Positives = 245/318 (77%), Gaps = 4/318 (1%) Query: 5 VEAAADPGINQKKWGILRR----MYRQRYLQIMALLGVAWMIVFNYFPMYGIVIAFKNYD 60 +E+A P + RR + Q+YLQ MA+ GV WMI+FNY PMYGI+IAFK YD Sbjct: 1 MESAISPNMQHSHQSGFRRFLHKLNEQKYLQAMAIPGVIWMIIFNYIPMYGIIIAFKEYD 60 Query: 61 IIGSIGSAPWAGLEHFREFFEDENLGYVVKNTLGISALRLLIGFPLPILFAILLNEMRSV 120 I +PW GL +F+EFF DE ++KNT+GIS +LL+GFPLPILFA+LLNE+ SV Sbjct: 61 ITLGFNKSPWVGLANFKEFFADERFWLIIKNTVGISFFKLLVGFPLPILFAVLLNELVSV 120 Query: 121 RFKKSVQTISYLPYFLSWVILGGILTTWLADVGIINHLLMKLHLIHEPVNFLAEPKHFWG 180 RFK++VQTISYLP+F+SWV+LGGIL WL++ G+IN +L K+ ++ +P+ FLAEPK+FWG Sbjct: 121 RFKRTVQTISYLPHFISWVVLGGILMNWLSETGLINIILTKIGILKQPIAFLAEPKYFWG 180 Query: 181 IAVISSIWKELGWSAIIYLAAISGISPELYEAAKIDGAGRFQRIKSITLPSIAGTVSILF 240 I V+S +WKELGW+AIIYLAAI+GI PELYEAA +DGAGRF ++ IT+P I+GT++I+F Sbjct: 181 ITVVSEVWKELGWNAIIYLAAIAGIDPELYEAATVDGAGRFTKMFKITIPCISGTIAIMF 240 Query: 241 ILAVSGILNSNFDQIMVLRNSLNESASSVIDIYIYQTGLQNARFSYSTAVGLVKSVIAXX 300 ILAVSG++NSNFDQI VLRN LN AS VIDIY+Y+ G++ RFSY+TA+GL KS+IA Sbjct: 241 ILAVSGLMNSNFDQIFVLRNPLNADASDVIDIYVYRMGIEAFRFSYATAIGLFKSIIALM 300 Query: 301 XXXISNSVTKRINNTSLF 318 +N VTK++ SLF Sbjct: 301 LLLTANGVTKKLTGKSLF 318 >A4XMJ2.1 A4XMJ2_CALS8 Binding-protein-dependent transport systems inner membrane component Length = 318 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/298 (62%), Positives = 241/298 (80%) Query: 21 LRRMYRQRYLQIMALLGVAWMIVFNYFPMYGIVIAFKNYDIIGSIGSAPWAGLEHFREFF 80 L ++ Q+YLQ MA+ GV WMI+F Y PMYGI+IAFK YDI I +PW GL +F+EFF Sbjct: 21 LHKLNEQKYLQAMAIPGVIWMIIFCYIPMYGIIIAFKEYDITLGINKSPWVGLANFKEFF 80 Query: 81 EDENLGYVVKNTLGISALRLLIGFPLPILFAILLNEMRSVRFKKSVQTISYLPYFLSWVI 140 DE ++KNT+GIS +LL+GFPLPILFA+LLNE+ SVRFK++VQTISYLP+F+SWV+ Sbjct: 81 SDERFWLIIKNTVGISFFKLLVGFPLPILFAVLLNELTSVRFKRTVQTISYLPHFISWVV 140 Query: 141 LGGILTTWLADVGIINHLLMKLHLIHEPVNFLAEPKHFWGIAVISSIWKELGWSAIIYLA 200 LGGIL WL++ G+IN +L KL ++ +P+ FLAEPK+FWGIAVIS +WKELGW+AIIYLA Sbjct: 141 LGGILMNWLSETGLINIILTKLGILKQPITFLAEPKYFWGIAVISEVWKELGWNAIIYLA 200 Query: 201 AISGISPELYEAAKIDGAGRFQRIKSITLPSIAGTVSILFILAVSGILNSNFDQIMVLRN 260 AI+GI PELYEAA +DGAGR ++ IT+P I+GT++I+FILAVSG++NSNFDQI VLRN Sbjct: 201 AIAGIDPELYEAATVDGAGRITKMFKITIPCISGTIAIMFILAVSGLMNSNFDQIFVLRN 260 Query: 261 SLNESASSVIDIYIYQTGLQNARFSYSTAVGLVKSVIAXXXXXISNSVTKRINNTSLF 318 LN AS VIDIY+Y+ G++ RFSY+TA+GL KS+IA ++N VTK++ + SLF Sbjct: 261 PLNADASDVIDIYVYKMGIEAFRFSYATAIGLFKSIIALILLLLANGVTKKLTDKSLF 318 >A9KLB7.1 A9KLB7_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 313 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/305 (57%), Positives = 233/305 (76%) Query: 14 NQKKWGILRRMYRQRYLQIMALLGVAWMIVFNYFPMYGIVIAFKNYDIIGSIGSAPWAGL 73 +KK +RR+ Q+YLQ+M + G+ WM++FNY PM GI+IAFK + I SI APW GL Sbjct: 9 KRKKSVTMRRLMNQKYLQLMVIPGIIWMLIFNYIPMGGIIIAFKKFKITKSIAEAPWVGL 68 Query: 74 EHFREFFEDENLGYVVKNTLGISALRLLIGFPLPILFAILLNEMRSVRFKKSVQTISYLP 133 ++F EFF+D N ++ NTLGIS L+L+IGFPLPI+FA+L+NE+R+++FKK QTISYLP Sbjct: 69 KYFEEFFQDSNFSNIMVNTLGISLLKLIIGFPLPIIFALLINEIRNLKFKKITQTISYLP 128 Query: 134 YFLSWVILGGILTTWLADVGIINHLLMKLHLIHEPVNFLAEPKHFWGIAVISSIWKELGW 193 +FLSWV+LGGILTTWL G+IN L LH+ PV++L +PK+FWG+A++S WKELGW Sbjct: 129 HFLSWVVLGGILTTWLNSTGVINVLFQALHITSGPVSYLGDPKYFWGVALVSDSWKELGW 188 Query: 194 SAIIYLAAISGISPELYEAAKIDGAGRFQRIKSITLPSIAGTVSILFILAVSGILNSNFD 253 SAIIYLAAIS + +LYEAA +DGA + Q+I ITLPSI GT++I+ IL VSG+LN+NFD Sbjct: 189 SAIIYLAAISSVDQQLYEAATVDGATKIQKIFKITLPSIKGTIAIMLILQVSGLLNANFD 248 Query: 254 QIMVLRNSLNESASSVIDIYIYQTGLQNARFSYSTAVGLVKSVIAXXXXXISNSVTKRIN 313 QIM+L+N +N S S VID Y+YQ G+ ++SY+TAV L KSVIA I+N +KR+ Sbjct: 249 QIMILKNQINISRSQVIDTYVYQVGMSLGKYSYATAVSLFKSVIALFLLLIANFSSKRLL 308 Query: 314 NTSLF 318 SL+ Sbjct: 309 GRSLY 313 >Q835Y6.1 Q835Y6_ENTFA ABC transporter, permease protein Length = 303 Score = 311 bits (797), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 147/294 (50%), Positives = 210/294 (71%) Query: 21 LRRMYRQRYLQIMALLGVAWMIVFNYFPMYGIVIAFKNYDIIGSIGSAPWAGLEHFREFF 80 L++ Y QR L M L GVA+MIVFNY P+YGI+IAFKNY I+ ++ SAPW GLE+FR Sbjct: 4 LKKFYDQRQLHWMVLPGVAFMIVFNYIPIYGIIIAFKNYTIVDTVSSAPWVGLENFRIIM 63 Query: 81 EDENLGYVVKNTLGISALRLLIGFPLPILFAILLNEMRSVRFKKSVQTISYLPYFLSWVI 140 ED V+NTL IS ++L +GF +PI+ A+++ EMR KK +QTISY+P+F SW++ Sbjct: 64 EDSFFWEAVRNTLAISLMKLFLGFAIPIILAVMIFEMRDGHLKKVIQTISYIPHFFSWIV 123 Query: 141 LGGILTTWLADVGIINHLLMKLHLIHEPVNFLAEPKHFWGIAVISSIWKELGWSAIIYLA 200 LGG+L +WL+ G IN ++M L L+++ VN L +P +W IAV+S +WKE+GW I+YLA Sbjct: 124 LGGMLISWLSTNGFINQVMMSLGLMNQGVNHLLDPDKYWWIAVLSDLWKEVGWGTILYLA 183 Query: 201 AISGISPELYEAAKIDGAGRFQRIKSITLPSIAGTVSILFILAVSGILNSNFDQIMVLRN 260 +S I P YEAA+IDGA + +I++ITLP +A +S+ IL VSG+L SN DQ +VL N Sbjct: 184 GMSRIDPTFYEAARIDGASKLTQIRTITLPLLAPIISLNLILNVSGLLGSNLDQTLVLMN 243 Query: 261 SLNESASSVIDIYIYQTGLQNARFSYSTAVGLVKSVIAXXXXXISNSVTKRINN 314 + N++ S VI+ ++Y+ GL FSY+TAVGL SVI+ I++ +T+++NN Sbjct: 244 AQNQNKSEVINSFVYRMGLTQGDFSYATAVGLGISVISIVLLVITDRITRKMNN 297 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,815,500,175 Number of extensions: 74829721 Number of successful extensions: 289811 Number of sequences better than 1.0e-05: 5243 Number of HSP's gapped: 286744 Number of HSP's successfully gapped: 5243 Length of query: 318 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 183 Effective length of database: 1,788,859,178 Effective search space: 327361229574 Effective search space used: 327361229574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)