BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0013.p (511 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3M6.1 B3K3M6_9BACI Extracellular solute-binding protein family 1 223 5e-56 B1D7R2.1 B1D7R2_9BACL Extracellular solute-binding protein family 1 209 8e-52 B3KBW5.1 B3KBW5_9BACI Extracellular solute-binding protein family 1 190 3e-46 C2BXH1.1 C2BXH1_LISGR ABC superfamily ATP binding cassette trans... 132 9e-29 B1DDC8.1 B1DDC8_9BACL ABC-type sugar transport system periplasmi... 132 1e-28 >B3K3M6.1 B3K3M6_9BACI Extracellular solute-binding protein family 1 Length = 516 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 153/477 (32%), Positives = 229/477 (48%), Gaps = 27/477 (5%) Query: 51 ETVTLKAYFPGDKPAGFDDVLQAVNDKLKKDNVGAALNINFLPWSDYGNAVSVKMSAGED 110 E VTLK PGD+P+ D V+ A +K KD + L++ F+PWSD V +++GE+ Sbjct: 49 EEVTLKIMIPGDRPSDMDLVI-AEAEKRMKDTINVKLDVVFVPWSDLAQKTQVTLASGEN 107 Query: 111 FDMYLDAPWLSMNQMIDGNSLKELDAEVAKRPE-LKASIPDEMWEYNKFKGKIMGIPXXX 169 D+ DAPWL +NQMI + LD +AK + + P +MW+YNK+ GKIM +P Sbjct: 108 IDLIFDAPWLHINQMIANGFYEPLDDLLAKYGQTVLEKRPQQMWDYNKYGGKIMAVPLGV 167 Query: 170 XXXXXXXXXIRKDLREKYGLPELKTLDDLEKFLYKVKENEKDVKPFVLNGIKADKLPFIL 229 +RKD+REK G+P +KT ++L F YKVKE EK + P + Sbjct: 168 SYMSGNSYMVRKDIREKLGVPPIKTYEELIAFAYKVKEQEKGIIPMSAGSATYSFVAHHA 227 Query: 230 SDSANLALDEVLEIGVN-MFAYSTKDKKV---------VGQWASPMIADGYERVTKYYKD 279 + + +G + M Y D KV +G W + K++KD Sbjct: 228 LNDYETHVRPTHALGNSLMLYYKNNDGKVYNLLEDREPIGTWLA--------NTHKWFKD 279 Query: 280 GIISKNIAQEQNAETLFKQGKYAATYYAADGVEGLKYSEMLQN---GSDKLEIFIPNGDK 336 G+I K+I ++ GK A A G+ G +N G + + N +K Sbjct: 280 GLIFKDILTTKDFHQPISAGKVAIVTNGAFGI-GDSLKNTFKNNVPGGELETVTFFNPEK 338 Query: 337 AKPYTAFQQWNFLCIPASSEHADLALDVVNWMSIKENHDLMEYGIQGKDWEPVGDSSYKV 396 T F+QWNFL +P S++ + A+ +NW + KEN+DL+ YGI+GK WE VG+ K Sbjct: 339 GANLTNFKQWNFLAVPKVSKNKERAIMFLNWANEKENYDLLSYGIEGKHWEAVGEDKMKN 398 Query: 397 L--SKYSFPGYVLTWRPTLNRTPDTMMKDDKKWFDFSTNPANFTLSPTAGFNFNAEKVKT 454 L S YS GYV W P R+ + + + FT AGF F++ V+ Sbjct: 399 LDTSGYSAFGYVWLWNPVDERSVVGGDPQNDEMDAVLRDADMFTTDILAGFEFDSTPVQN 458 Query: 455 EYAKITPLHDSIFLPLSQGVLPADQGKKTLEKKIAGLGGQKVIDEIQAQIDAVTSGK 511 E ++ + + L GV+ + K E + AG K+ E+Q QID + K Sbjct: 459 EVSQYNTVDGQYYTALFNGVIDPEDTLKKFEAE-AGPALHKIQQELQKQIDEFLAAK 514 >B1D7R2.1 B1D7R2_9BACL Extracellular solute-binding protein family 1 Length = 547 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 158/487 (32%), Positives = 238/487 (48%), Gaps = 41/487 (8%) Query: 53 VTLKAYFPGDKPAGFDDVLQAVNDKLKKDNVGAALNINFLPWSDYGNAVSVKMSAGEDFD 112 VTLK GDKP D VL +K K D + L+I + P +D+ +++KMSAGE D Sbjct: 62 VTLKVMLFGDKPIDMDKVLTEFENKTK-DTLNTKLDIEYNPNADHKQKLTLKMSAGESVD 120 Query: 113 MYLDAPWLSMNQMIDGNSLKELDAEVA--KRPELKASIPDEMWEYNKFKGKIMGIPXXXX 170 DAPW+S+NQ + +ELD + P LK + P++ NK G I IP Sbjct: 121 AAFDAPWMSLNQNVSLGYYQELDKYFNNDEYPGLKKAFPEDYLNANKINGHIYSIPLTNA 180 Query: 171 XXXXXXXXIRKDLREKYGLPELKTLDDLEKFLYKVKENEKDVKPFVLNGIKADKLPFILS 230 +RKDLREKYG+ +++ DDLE +L V++NEK + P + F Sbjct: 181 FYDIDVIYVRKDLREKYGMQPIQSYDDLETYLKNVQQNEKGIIPMANKNDRGFYKMFGRE 240 Query: 231 DSANLALDEVLEIGVNMFAYSTKDKKVVGQWASPMIADGYERVTKYYKD----------- 279 D A + G N++ S KKV+G A + + Y D Sbjct: 241 DKIVNAKAISMTPGFNVYL-SDDGKKVLGATTLGDDASKFADLPAPYNDPYYFYPQYDKF 299 Query: 280 ----GIISKNIAQEQNAETLFKQGKYAATYYAADGVEGLKYSEMLQN---GSDKLEIFIP 332 I K++ E++ + LF GK AA +G ++ + LQ+ GSD LE+F+ Sbjct: 300 VEWNKYIQKDVLSEKDHQALFVGGKSAAYEGTINGAAQVR--QRLQSAVPGSD-LEMFVY 356 Query: 333 NG-----DKAKPYTAFQQWNFLCIPASSEHADLALDVVNWM-SIKENHDLMEYGIQGKDW 386 N + A T ++ WN + IP +S++A+ + +W+ S +NHDL+E GI+G+ W Sbjct: 357 NSHVRNMEPAAIGTDYKAWNDIVIPVTSKNAERTMKFFDWLFSSSDNHDLLELGIEGEHW 416 Query: 387 EPVGDSSYKVLSK---YSFPGYVLTWRPTLNRTPDTMMKDDKKWFDFSTNPANFTLSPTA 443 GD +YK+ K Y FP Y TW PT++R + K D+ + + L+P + Sbjct: 417 TKDGDRNYKMTDKTTNYVFPSYEFTWNPTMSRINGDNDEQTLKLLDYQSKNETYYLTPMS 476 Query: 444 GFNFNAEKVKTEYAKITPL---HDSIFLPLSQGVLPA-DQGKKTLEKKIAGLGGQKVIDE 499 GF FN E VK+E AKI+PL D IF + G+ Q + K++ G +KV E Sbjct: 477 GFTFNTEPVKSEIAKISPLVQQRDPIF---NNGLDKNWKQSAAKVNKQMESYGLEKVRQE 533 Query: 500 IQAQIDA 506 + Q+ A Sbjct: 534 VIKQVQA 540 >B3KBW5.1 B3KBW5_9BACI Extracellular solute-binding protein family 1 Length = 512 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 131/474 (27%), Positives = 232/474 (48%), Gaps = 28/474 (5%) Query: 51 ETVTLKAYFPGDKPAGFDDVLQAVNDKLKKDNVGAALNINFLPWSDYGNAVSVKMSAGED 110 E VTL+ PG K A +D+VL VN +LK + + + F+ ++D +V +++GE Sbjct: 45 EPVTLEVVIPGAKGANYDEVLTEVNKRLKAE-INTQVKFTFVDFADLNQKTNVMLASGES 103 Query: 111 FDMYLDAPWLSMNQMIDGNSLKELDAEVAKR-PELKASIPDEMWEYNKFKGKIMGIPXXX 169 D+ DAPWL ++ M +EL + + P +K + P +MW+ NK G I G+P Sbjct: 104 VDLMFDAPWLHLDTMASQGYYEELSELLDQYGPNVKKTRPQQMWDANKINGNIYGVPLGS 163 Query: 170 XXXXXXXXXIRKDLREKYGLPELKTLDDLEKFLYKVKENEKDVKPFVLNG--IKADKLPF 227 IRKDLRE+ LP +KT +DL+ +LY V+++ + P + + + + Sbjct: 164 AYTQQRSIFIRKDLREQLNLPSVKTYEDLKAYLYAVRDSNSGITPLLAGADDVTYSWVNW 223 Query: 228 ILSDSANLALDEVLEIGVN-MFAYSTKDKKVVG--QWASPMIADGYERVTKYYKDGIISK 284 ++ D + + G + M Y D KV + P I G + V + + D ++S+ Sbjct: 224 LIRDDTGVNIRPTNFAGASLMLYYKGNDGKVYNFFETQEPKIWSGIQDVRQLFVDKVMSQ 283 Query: 285 NIAQEQNAETLFK-QGKYAATYYAADGVEGLKYSEMLQNGSDKLEIFIPNGD-------- 335 ++ +++ + Q K AAT A G+ + +D+L+ +P+G+ Sbjct: 284 DVLTNKSSPGDMQLQNKVAATPQMAFGIP--------KTYNDQLKQVVPDGELEAVRLFD 335 Query: 336 --KAKPYTAFQQWNFLCIPASSEHADLALDVVNWMSIKENHDLMEYGIQGKDWEPVGDSS 393 K + ++ NF+CI +S+H D A+ ++W + +EN+DL+E+GI+G +W+ VG+ Sbjct: 336 LTPGKNLSNYKMDNFICIVKTSKHKDRAMMFLDWANRQENYDLLEHGIEGVNWKAVGEHQ 395 Query: 394 YKVLSK-YSFPGYVLTWRPTLNRTPDTMMKDDKKWFDFSTNPANFTLSPTAGFNFNAEKV 452 Y L+ + L PTL R + ++ +++ F T NFT GF F+ V Sbjct: 396 YDTLNNDGGIVSFQLMLNPTLEREWAGIDEETREYSQFITQADNFTKDIMTGFTFDPTPV 455 Query: 453 KTEYAKITPLHDSIFLPLSQGVLPADQGKKTLEKKIAGLGGQKVIDEIQAQIDA 506 K E A+ + + L G L D+ + + + Q + E+Q Q+DA Sbjct: 456 KNEVAQFATIQAKYYSGLFNGALDPDEYFARFKTEGEAVLKQ-IQTELQNQVDA 508 >C2BXH1.1 C2BXH1_LISGR ABC superfamily ATP binding cassette transporter, binding protein Length = 484 Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 124/462 (26%), Positives = 209/462 (45%), Gaps = 38/462 (8%) Query: 58 YFPGDKPAGFDDVLQAVNDKLKKDNVGAALNINFLPWSDYGNAVSVKMSAGEDFDMYLDA 117 Y GDKP GFD +L N K+KK+ GA L++ F+ W DY +SV +S+GE++D+ Sbjct: 43 YQIGDKPEGFDALLADANKKIKKE-TGATLDMRFITWGDYPKKMSVIVSSGENYDIAYAN 101 Query: 118 PWLSMNQMIDGNSLKELDAEVAKRPELKASIPDEMWEYNKFKGKIMGIPXXXXXXXXXXX 177 ++ Q L +L + AK+ + + N GK+ P Sbjct: 102 SYVINAQKGAYTDLTKLLPKHAKKAY--DQLDPAYIKGNTVNGKLYAFPVNANVFAQQVL 159 Query: 178 XIRKDLREKYGL--PELKTLDDLEKFLYKVKENEKDVKPFVLNGIKADKLPFILSDSANL 235 K +KY L +K+ DL L +KE EK V P A F + + Sbjct: 160 TFNKHYLDKYDLDIKNVKSYQDLAPLLKVIKEKEKSVTPI------AAGQGFKVESNMEY 213 Query: 236 ALDEVLEIGVNMFAYSTKDKKVVGQWASPMIADGYERVTKYYKDGIISKNIAQEQNAETL 295 L+ + +++ TK ++ Q+ + + D + KYYKDG ++++ A N L Sbjct: 214 PLENKMPFAIDLKGDGTK---IINQYDNERMKDNLRTMHKYYKDGYVAQDAATSTNEYPL 270 Query: 296 FKQGKYAATYYAADGVEG-LKYSE-MLQNGSDKLEIFIPNGDKAKPYTAFQQWNFLCIPA 353 ++T++ +G Y + +L + + + P D K T Q NF+ + + Sbjct: 271 -----NSSTWFVRQETQGPFDYGDTILTQAAGQPLVSKPITDAYKTNTQAQIANFV-VSS 324 Query: 354 SSEHADLALDVVNWMSIKEN-HDLMEYGIQGKDWEPVGDSSYKVLSKYSFPGYVLTWR-- 410 +S+H + A++V+ ++ + + + YGI+GK W+ V + K+L Y ++ W Sbjct: 325 NSKHKEKAVEVLGVLNSDPSILNTLIYGIEGKAWKKVDNGRVKLLDGYKPNNHLSAWNTG 384 Query: 411 ------PTLNRTPDTMMKDDKKWFDFSTNPANFTLSPTAGFNFNAEKVKTEYAKITPLHD 464 PT N +P + + D K +P GFNFN + VKTE + I+ + + Sbjct: 385 NNKIIYPTDNVSPAKIKERDDKI-------KAAKQTPLLGFNFNTDSVKTELSNISNVMN 437 Query: 465 SIFLPLSQGVLPADQGKKTLEKKIAGLGGQKVIDEIQAQIDA 506 L+ G L D+ ++KK+ G KV DEIQ Q DA Sbjct: 438 QYVDGLNTGTLDPDKAIPEMDKKLKKAGYDKVRDEIQKQYDA 479 >B1DDC8.1 B1DDC8_9BACL ABC-type sugar transport system periplasmic component-like protein Length = 527 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 143/484 (29%), Positives = 218/484 (45%), Gaps = 41/484 (8%) Query: 51 ETVTLKAYFPGDKPAGFDDVLQAVNDKLKKDNVGAALNINFLPWSDYGNAVSVKMSAGED 110 + + +K G KP +D V +N KLK + V A ++ FL W+D+ +K +A ED Sbjct: 62 QELKIKMLMVGGKPVDYDAVFAEINKKLK-EKVNATIDAEFLDWADWTQKYPLKFAANED 120 Query: 111 FDMYLDAPWLSMN-QMIDGNSLKELDAEVAK-RPELKASIPDEMWEYNKFKGKIMGIPXX 168 FD+ A W N Q + G ++ D + K P+ ++P WE +K GK +P Sbjct: 121 FDIAYTANWAFYNDQALKGGFMELTDDMLNKFMPQTMKAMPAVAWEQSKVNGKQFMVPNN 180 Query: 169 XXXXXXXXXXIRKDLREKYGLPELKTLDDLEKFLYKVKENEKDVKPFVLNGI---KADKL 225 IR+DLR+KY L + + + +L + NEK + F G K +L Sbjct: 181 NPEVTDKAVLIREDLRKKYNLEPVNSPETYAAYLKAIAANEKGINGFNAKGADGWKWHEL 240 Query: 226 PFILSDSANLALDEVLEIGVNM-FAYSTKDK--KVVGQWASPMIADGYERVTKYYKD--- 279 IL + AN + + +M AY D KV + +P ++ + YYKD Sbjct: 241 DQILLEQAN----DFNLVDYSMPLAYKLDDATGKVFNIYDTP----EFKSLLAYYKDLAD 292 Query: 280 -GIISKNIAQEQN-AETLFKQGKYAATYYAADGVEGLKYSEMLQNGSD-KLEI--FIPNG 334 G SKNI +N K GK A+Y G + +E+ + D +L I PN Sbjct: 293 NGAWSKNIVSNKNDVWQDIKAGK-TASYAQNLGTVAMNLAELKREQPDVELAIADLTPN- 350 Query: 335 DKAKPYTAFQQWNFLCIPASSEHADLALDVVNWM-SIKENHDLMEYGIQGKDWEPVGDSS 393 +K A N I A+S+ AD +L V++ + + KE HDL YGI G ++EPVGD Sbjct: 351 --SKKIAAISTQNGFAIHATSKKADRSLMVLDLLQNDKEIHDLFMYGIAGTNYEPVGDDK 408 Query: 394 YKVLSKYSFPGYV--LTW--RPTLNRTPDTM-MKDDKKWFDFSTNPANFTLSPTAGFNFN 448 + L P Y W LNR + + D D+ +F L F FN Sbjct: 409 FNALP--GTPNYTGFSNWGSNSPLNRKDASYPAEADAIATDWEKKVYHFKLET---FVFN 463 Query: 449 AEKVKTEYAKITPLHDSIFLPLSQGVLP-ADQGKKTLEKKIAGLGGQKVIDEIQAQIDAV 507 VK E A + + +PL G++ D+G+ L ++ G +KV E+Q QIDA Sbjct: 464 DANVKNEVANVGNVMLRYAIPLEYGLIKDIDKGQADLIAQLKAAGIEKVQKELQTQIDAF 523 Query: 508 TSGK 511 + + Sbjct: 524 LAAQ 527 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,938,110,466 Number of extensions: 123639138 Number of successful extensions: 214128 Number of sequences better than 1.0e-05: 159 Number of HSP's gapped: 213648 Number of HSP's successfully gapped: 162 Length of query: 511 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 371 Effective length of database: 1,741,754,103 Effective search space: 646190772213 Effective search space used: 646190772213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 134 (56.2 bits)