BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0012.p (294 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBW4.1 B3KBW4_9BACI Binding-protein-dependent transport system... 267 7e-70 B1D7R3.1 B1D7R3_9BACL Binding-protein-dependent transport system... 254 5e-66 B3K3M5.1 B3K3M5_9BACI Binding-protein-dependent transport system... 253 1e-65 A4XN07.1 A4XN07_CALS8 Binding-protein-dependent transport system... 248 6e-64 C4IBC5.1 C4IBC5_CLOBU Protein LplC 234 8e-60 >B3KBW4.1 B3KBW4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 303 Score = 267 bits (683), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 121/261 (46%), Positives = 184/261 (70%), Gaps = 3/261 (1%) Query: 34 MIIGSFTDEGELIAHGYTLFPQKLSLDAYKAVLQSDVLFNGYAVTIFITVVGALSALCIS 93 M+I SF+ L +GY+++P + +L++Y+ +LQ +F Y VTI +TV+G + L ++ Sbjct: 46 MVINSFSSTRSLAVNGYSVWPDEFTLESYRFLLQGKQMFTSYGVTIAVTVIGTVIGLVVT 105 Query: 94 AMLGYSLANKRNVLQTPFLFFCYLPMLFSGGIIPFYIVVSQWLHLQNTIWVLVLTMLCQP 153 A+ Y LA+ +N F Y+PM+F G++ FY++V QWLHL++T+W LVL + P Sbjct: 106 ALFAYVLAHPKNRYGGFLSFMTYVPMVFGSGLVGFYLLVVQWLHLKDTLWALVLPYVMNP 165 Query: 154 FLVFLLVSFFRTIPEELEEAARIDGANEMRVFFQIMIPISKPILASVGLFYALNYWNDWF 213 F F+LVSF+R++P EL E+A +DGA E +FF+I+ PIS P++A++ LFYAL YWNDW+ Sbjct: 166 FFAFILVSFYRSLPYELNESANMDGAGEWTIFFKIIRPISTPVIATISLFYALQYWNDWW 225 Query: 214 MGLMFVDNEKLFPLQLILRRMVSNMEAAKNLIPASAAIAVTPPTYGVRMATTVLTIGPIV 273 + L+F+DN ++PLQL+LR+++S M+ + PP GV++AT LTIGPI+ Sbjct: 226 LSLLFIDNSDMYPLQLLLRQLMSQMQLTSL---NHGNVLTLPPAEGVKLATVCLTIGPII 282 Query: 274 LLYPMLQKYFVKGLTVGAVKG 294 L+YPM+QKYFVKGLT+G+VKG Sbjct: 283 LVYPMVQKYFVKGLTLGSVKG 303 >B1D7R3.1 B1D7R3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 254 bits (650), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 120/291 (41%), Positives = 187/291 (64%) Query: 4 KQSAADRTFTVSAHTXXXXXXXXXXXXXXXMIIGSFTDEGELIAHGYTLFPQKLSLDAYK 63 K+S DR +I S T E ++ GY++ P+ S++AYK Sbjct: 3 KESKGDRLLKAGIFIILILFSIYCLIPFITVISSSLTTESSILRDGYSILPKDFSMEAYK 62 Query: 64 AVLQSDVLFNGYAVTIFITVVGALSALCISAMLGYSLANKRNVLQTPFLFFCYLPMLFSG 123 + + D ++ Y VTIF+T+VG L A+ ++ L Y L+ + ++ F+ Y MLF G Sbjct: 63 LIFRDDTIYRSYGVTIFVTLVGTLLAMLVTCALAYPLSIRTLKYKSQVNFYIYFTMLFHG 122 Query: 124 GIIPFYIVVSQWLHLQNTIWVLVLTMLCQPFLVFLLVSFFRTIPEELEEAARIDGANEMR 183 G++ Y+++S++L ++++IWVL++ L P+ +FLL +FF+++ E L E+A+IDGAN++ Sbjct: 123 GLVANYLLISKYLGMKDSIWVLIIPALVSPWNMFLLRNFFKSVDESLSESAKIDGANDIY 182 Query: 184 VFFQIMIPISKPILASVGLFYALNYWNDWFMGLMFVDNEKLFPLQLILRRMVSNMEAAKN 243 +FF+I++PIS P LA+VGLFY++ +WN WF ++++ +EKLFPLQ ++ R++SN E A Sbjct: 183 IFFRIILPISMPALATVGLFYSMGFWNKWFEAMLYISDEKLFPLQYLVMRIMSNAEFANQ 242 Query: 244 LIPASAAIAVTPPTYGVRMATTVLTIGPIVLLYPMLQKYFVKGLTVGAVKG 294 L + PT R+ATTV+TIGPI+ LYP LQKYFVKGL VGAVKG Sbjct: 243 LSTQISLPNYVVPTLTTRLATTVVTIGPIIFLYPFLQKYFVKGLMVGAVKG 293 >B3K3M5.1 B3K3M5_9BACI Binding-protein-dependent transport systems inner membrane component Length = 288 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 112/259 (43%), Positives = 177/259 (68%) Query: 36 IGSFTDEGELIAHGYTLFPQKLSLDAYKAVLQSDVLFNGYAVTIFITVVGALSALCISAM 95 I SF DE L GY L P K SL AYK +L +F Y +T+ +T+ G + ++A Sbjct: 30 INSFADESLLQTAGYQLLPSKFSLHAYKFLLSGKQVFLSYGITMIVTIAGTALGVLLTAA 89 Query: 96 LGYSLANKRNVLQTPFLFFCYLPMLFSGGIIPFYIVVSQWLHLQNTIWVLVLTMLCQPFL 155 Y+L++++ + F +L MLF G++ FY++++ WL L++++W L+L L PF Sbjct: 90 YAYTLSHRKVKYRHILSFLTFLTMLFGAGLVGFYMLIANWLQLKDSVWALILPYLLNPFY 149 Query: 156 VFLLVSFFRTIPEELEEAARIDGANEMRVFFQIMIPISKPILASVGLFYALNYWNDWFMG 215 F+LVS++RT+P EL EAA +DGAN++ +FF+I+ PIS P++A+V LFYAL YWNDW++ Sbjct: 150 AFILVSYYRTLPYELNEAATVDGANDLYIFFRIIWPISLPVIATVSLFYALQYWNDWYLS 209 Query: 216 LMFVDNEKLFPLQLILRRMVSNMEAAKNLIPASAAIAVTPPTYGVRMATTVLTIGPIVLL 275 L+F+DN K+ PLQ+++R+++SN+ + + V PTYG+++A +TIGPIV + Sbjct: 210 LLFIDNHKMLPLQMMIRQLMSNLNVMAYVSGSQTQYNVVVPTYGMQLAIVCVTIGPIVFV 269 Query: 276 YPMLQKYFVKGLTVGAVKG 294 YP +Q++F+KGLT+G+VKG Sbjct: 270 YPFIQRFFIKGLTLGSVKG 288 >A4XN07.1 A4XN07_CALS8 Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 248 bits (632), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 117/266 (43%), Positives = 189/266 (71%), Gaps = 9/266 (3%) Query: 34 MIIGSFTDEGELIAHGYTLFPQKLSLDAYKAVLQSDVLFNGYAVTIFITVVGALSALCIS 93 +II S E +L A+G+TL P+++S DAYK V + +V+ N Y VTIF+TVVG + ++ ++ Sbjct: 33 VIINSIVPEADLAANGFTLIPKRISFDAYKIVFKGNVVLNAYKVTIFVTVVGTVLSMIVT 92 Query: 94 AMLGYSLANKRNVLQTPFLFFCYLPMLFSGGIIPFYIVVSQWLHLQNTIWVLVLTMLCQP 153 +++ Y L+ K + + Y+ MLFSGG++P YI+++++LHL NTIWV ++ L P Sbjct: 93 SLMAYPLSVKNLKYRNYIAMYVYITMLFSGGLVPSYILITRYLHLDNTIWVYIIPSLINP 152 Query: 154 FLVFLLVSFFRTIPEELEEAARIDGANEMRVFFQIMIPISKPILASVGLFYALNYWNDWF 213 + +F+L +FF TIP+ L E+ARIDGA+E+ + ++I++P+SKP +A++ LFYAL YWN+WF Sbjct: 153 WNLFVLRNFFGTIPDSLAESARIDGASEVYILWKIILPLSKPAIATLSLFYALGYWNEWF 212 Query: 214 MGLMFVDNEKLFPLQLILRRMVSNME-----AAKNLIPASAAIAVTPPTYGVRMATTVLT 268 ++++ ++KL+ LQ ++ ++ +++ A + +P + + P VRMATTV+T Sbjct: 213 KCVLYITDQKLYTLQYLIMAIMRDIQMLTQYAQEMNMPVNYIL----PQQTVRMATTVVT 268 Query: 269 IGPIVLLYPMLQKYFVKGLTVGAVKG 294 IGPI+ LYP LQKYF+KGL +GAVKG Sbjct: 269 IGPIIFLYPFLQKYFIKGLVIGAVKG 294 >C4IBC5.1 C4IBC5_CLOBU Protein LplC Length = 296 Score = 234 bits (597), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 117/294 (39%), Positives = 187/294 (63%), Gaps = 4/294 (1%) Query: 4 KQSAADRTFTVSAHTXXXXXXXXXXXXXXXMIIGSFTDEGELIAHGYTLFPQKLSLDAYK 63 K+ + F ++T +++GS TDE E+I G++LFP SL+AY+ Sbjct: 2 KKGRDVKVFNTISYTVIAVISLLCLIPFLLVLMGSITDEQEIIQSGFSLFPNSFSLEAYR 61 Query: 64 AVLQSDV-LFNGYAVTIFITVVGALSALCISAMLGYSLANKRNVLQTPFLFFCYLPMLFS 122 L+ + + Y VTI +TV+G + L I AM GY L K + F FF Y LFS Sbjct: 62 TALKDPMAIVRAYGVTISLTVIGTILGLFIVAMTGYVLQRKDFKWRNKFSFFFYFTTLFS 121 Query: 123 GGIIPFYIVVSQWLHLQNTIWVLVLTMLCQPFLVFLLVSFFRTIPEELEEAARIDGANEM 182 GG++P+YI++ ++L L+++ ++L L F + L+ S+ +IP+ L EAA+IDGA + Sbjct: 122 GGLVPWYILMVRYLDLKDSYLAMLLPPLLSVFNIILMKSYLNSIPQSLIEAAKIDGAGDF 181 Query: 183 RVFFQIMIPISKPILASVGLFYALNYWNDWFMGLMFVDNEKLFPLQLILRRMVSNMEAAK 242 ++F ++++P+SKP LA+VGLF A+ YWNDW+ ++F++NEKL+ LQ L ++V+N+EA K Sbjct: 182 QIFMKVILPLSKPALATVGLFIAIGYWNDWYNCMLFINNEKLYSLQYYLYKIVNNVEAYK 241 Query: 243 NLIP---ASAAIAVTPPTYGVRMATTVLTIGPIVLLYPMLQKYFVKGLTVGAVK 293 ++ S A+ P+ ++MA T++ GPI+LLYP +QKYFV+G+T+GAVK Sbjct: 242 TILSQTGGSIGAAIDMPSESLKMALTIIVTGPIILLYPFIQKYFVQGVTIGAVK 295 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.141 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,532,705,191 Number of extensions: 57915090 Number of successful extensions: 230415 Number of sequences better than 1.0e-05: 5805 Number of HSP's gapped: 224033 Number of HSP's successfully gapped: 5809 Length of query: 294 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 160 Effective length of database: 1,798,280,193 Effective search space: 287724830880 Effective search space used: 287724830880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)