BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0011.p (314 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3M4.1 B3K3M4_9BACI Binding-protein-dependent transport system... 325 4e-87 B3KBW3.1 B3KBW3_9BACI Binding-protein-dependent transport system... 321 7e-86 B1D7R4.1 B1D7R4_9BACL Binding-protein-dependent transport system... 312 2e-83 B1D8W1.1 B1D8W1_9BACL Binding-protein-dependent transport system... 308 5e-82 B1DF24.1 B1DF24_9BACL Binding-protein-dependent transport system... 306 1e-81 >B3K3M4.1 B3K3M4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 311 Score = 325 bits (833), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 160/304 (52%), Positives = 223/304 (73%), Gaps = 2/304 (0%) Query: 11 SKLKHIVQNPFLYXXXXAVPGLLFFLVFSYFPIYGIMIAFKDYNFAKGITGSDWVGFKNF 70 S ++ + +N +LY A+PG+ F VF+Y P+ G ++AF++Y + GI GS+WVGFKNF Sbjct: 10 SFVRELSRNRYLYLL--ALPGIAFLAVFAYMPMAGHLLAFQNYRLSDGIWGSEWVGFKNF 67 Query: 71 DYFFTSDDFWVILRNTLVLNILFILFTTVAAILIALMFNEIRNKYFKRISQSLIFLPYFM 130 ++FF D+ + NT+ LN LF++ +A+++A+ NEIRN+ FKRI+QS IFLPYF+ Sbjct: 68 EFFFNGKDWLRVTLNTVFLNALFLVTGLGSAVVLAIFLNEIRNRLFKRITQSFIFLPYFI 127 Query: 131 SWIVVGMIVQSLFGGEEPMINTWLQYIGLEPVNWMFESKLWPYILTVIRVWQGAGYLSII 190 SW+VV M+ +LF E +IN L +G E V+W +WPYILTVI W+ AGY SII Sbjct: 128 SWLVVSMMTLTLFSTSEGLINRALAALGYEGVDWYLTPGVWPYILTVISAWKIAGYNSII 187 Query: 191 FLAAITGISEDLYEAARIDGASKLQIVLRITLPLLVPTIMIMTLLAVGKIFNGDFAMIYA 250 FLA ITGIS + YE+ARI+GAS++Q +L ITLPL+ PT+MI+ LL +G+IF GDF MIYA Sbjct: 188 FLAVITGISSEYYESARIEGASRMQQMLYITLPLMRPTVMILALLGIGRIFYGDFGMIYA 247 Query: 251 IIGDNSMLYPTTDVIDTFVFRSMRQLHDFGMSSAVGLFQSIMGLIFVITANWITRRVSKE 310 IIGDN +L+PTTDVIDT+ FR++RQL +F MS+AV ++QS MGL+ ++ N I R+V + Sbjct: 248 IIGDNGILFPTTDVIDTYAFRALRQLGNFSMSAAVVVYQSSMGLVTILIFNAIARKVDAD 307 Query: 311 SALF 314 S LF Sbjct: 308 SRLF 311 >B3KBW3.1 B3KBW3_9BACI Binding-protein-dependent transport systems inner membrane component Length = 330 Score = 321 bits (822), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 163/301 (54%), Positives = 220/301 (73%), Gaps = 2/301 (0%) Query: 14 KHIVQNPFLYXXXXAVPGLLFFLVFSYFPIYGIMIAFKDYNFAKGITGSDWVGFKNFDYF 73 + +V+N LY A+PG++F +VFSY P+ G ++AFKD+ +KGI GSDWVG NF +F Sbjct: 32 RDLVKNRGLYTM--AIPGIIFLVVFSYIPLSGHLLAFKDFQISKGIWGSDWVGLDNFRFF 89 Query: 74 FTSDDFWVILRNTLVLNILFILFTTVAAILIALMFNEIRNKYFKRISQSLIFLPYFMSWI 133 F++ D+ + NT+ LN LFI+F V A+LIAL NEIR K+FKR QS++FLPYF+SW+ Sbjct: 90 FSNRDWIQVTVNTVYLNALFIIFEMVFALLIALFLNEIRLKWFKRTIQSVVFLPYFISWV 149 Query: 134 VVGMIVQSLFGGEEPMINTWLQYIGLEPVNWMFESKLWPYILTVIRVWQGAGYLSIIFLA 193 VVG + LF + +IN L GL+ V+W +WP ILT+ R+W+ AGY SII LA Sbjct: 150 VVGYMTFILFNNTDGLINRVLSMSGLQSVDWYQTPWVWPIILTLTRIWKSAGYYSIILLA 209 Query: 194 AITGISEDLYEAARIDGASKLQIVLRITLPLLVPTIMIMTLLAVGKIFNGDFAMIYAIIG 253 AITG S D YE+AR+DGA++LQ + ITLPLL P I+I+ LL VG+IF GDF MIY IIG Sbjct: 210 AITGFSSDYYESARLDGATRLQQMKYITLPLLKPQIIILVLLGVGRIFYGDFGMIYGIIG 269 Query: 254 DNSMLYPTTDVIDTFVFRSMRQLHDFGMSSAVGLFQSIMGLIFVITANWITRRVSKESAL 313 DN +L+PTTDVIDT+ +R++RQL +F MSSA+ +QSIMGLI V++ N + R++ K+S L Sbjct: 270 DNGILFPTTDVIDTYSYRALRQLGNFSMSSAIVFYQSIMGLIAVVSFNALVRKIDKDSRL 329 Query: 314 F 314 F Sbjct: 330 F 330 >B1D7R4.1 B1D7R4_9BACL Binding-protein-dependent transport systems inner membrane component Length = 325 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 152/311 (48%), Positives = 223/311 (71%), Gaps = 2/311 (0%) Query: 4 QLNASKRSKLKHIVQNPFLYXXXXAVPGLLFFLVFSYFPIYGIMIAFKDYNFAKGITGSD 63 Q +S L + +N LY +PG+L VF+Y P+ GI++AF+++N KGITGS+ Sbjct: 17 QARVKPKSFLMEMRRNGLLYLLM--LPGILLVFVFAYLPMGGIVVAFQNFNAIKGITGSE 74 Query: 64 WVGFKNFDYFFTSDDFWVILRNTLVLNILFILFTTVAAILIALMFNEIRNKYFKRISQSL 123 +VG KNF++F S + ++ NTL LN LFILF +A++ IA+MF+E+ K+FKRI Q++ Sbjct: 75 FVGLKNFEFFVQSKEVLHVIFNTLFLNALFILFGALASVSIAVMFSELGGKWFKRIVQTI 134 Query: 124 IFLPYFMSWIVVGMIVQSLFGGEEPMINTWLQYIGLEPVNWMFESKLWPYILTVIRVWQG 183 + LP F+SW V+ M V +L + M+N WL + + P+ + E WP+IL +I++WQG Sbjct: 135 VTLPNFLSWTVIAMFVTALLSSDTGMLNKWLAHFHIGPIAFFNEPAAWPFILVLIKIWQG 194 Query: 184 AGYLSIIFLAAITGISEDLYEAARIDGASKLQIVLRITLPLLVPTIMIMTLLAVGKIFNG 243 AG+ +I++LA ITGI+ ++YE+A IDGAS+ + + ITLPLL PTI++M LLA+G IF G Sbjct: 195 AGFGAIVYLATITGINPEIYESASIDGASRWKKIWYITLPLLKPTIILMMLLAIGGIFYG 254 Query: 244 DFAMIYAIIGDNSMLYPTTDVIDTFVFRSMRQLHDFGMSSAVGLFQSIMGLIFVITANWI 303 DF MIYA++G N +LYPTTDVIDT+V+R++ L D GMS+AVG+FQS++G I V+T N + Sbjct: 255 DFGMIYALVGRNVLLYPTTDVIDTYVYRALMDLGDMGMSAAVGVFQSVIGFILVVTVNQL 314 Query: 304 TRRVSKESALF 314 R+ S +SALF Sbjct: 315 ARKFSPDSALF 325 >B1D8W1.1 B1D8W1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 329 Score = 308 bits (788), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 153/318 (48%), Positives = 218/318 (68%), Gaps = 7/318 (2%) Query: 2 QYQLNASKRS----KLKHIVQNPFLYXXXXAVPGLLFFLVFSYFPIYGIMIAFKDYNFAK 57 Q + KRS +LK I++ + A+PGLL+ + +Y P++GI+IAFKD NFAK Sbjct: 14 QVSMRTEKRSAFAVRLKKIMK--YRALILMALPGLLYLFINNYLPMFGIVIAFKDINFAK 71 Query: 58 GITGSDWVGFKNFDYFFTSDDFWVILRNTLVLNILFILFTTVAAILIALMFNEIRNKYFK 117 GI GSDW+G KNF+Y F + D +VI RNTL+ NILFI+ T A +A+M NEIR ++ Sbjct: 72 GIMGSDWIGLKNFEYLFKTQDAYVITRNTLLYNILFIVLNTTIAFTLAIMLNEIRKRFLS 131 Query: 118 RISQSLIFLPYFMSWIVVGMIVQSLFGGEEPMIN-TWLQYIGLEPVNWMFESKLWPYILT 176 R Q+LI LPY +S ++VG +V E +N T L +G+EP++W E+K WP+ILT Sbjct: 132 RTYQTLILLPYLISMVIVGYLVLGFLDVENGFMNKTLLPMLGMEPISWYSETKYWPWILT 191 Query: 177 VIRVWQGAGYLSIIFLAAITGISEDLYEAARIDGASKLQIVLRITLPLLVPTIMIMTLLA 236 ++ VW+G G L II+LAAI GI ++ YEAA IDGA++ Q V+RIT PL++P I IMTLLA Sbjct: 192 IVNVWKGVGNLCIIYLAAIIGIDQEYYEAATIDGANRWQQVVRITFPLVLPVITIMTLLA 251 Query: 237 VGKIFNGDFAMIYAIIGDNSMLYPTTDVIDTFVFRSMRQLHDFGMSSAVGLFQSIMGLIF 296 +G+IF DF + Y + + L P T+ IDT+V+R++ L D GMSSA GL+Q+++G I Sbjct: 252 IGRIFYSDFGLFYQVPLNTGSLMPVTNTIDTYVYRALINLGDIGMSSAAGLYQALVGFIL 311 Query: 297 VITANWITRRVSKESALF 314 VI +N + R+ +K++ALF Sbjct: 312 VIVSNAVVRKFNKDNALF 329 >B1DF24.1 B1DF24_9BACL Binding-protein-dependent transport systems inner membrane component Length = 307 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 152/308 (49%), Positives = 216/308 (70%), Gaps = 4/308 (1%) Query: 9 KRSKLKHIVQNPFLYXXXXAVPGLLFFLVFSYFPIYGIMIAFKDYNFAKGITGSDWVG-- 66 K ++ + +N L V LLF +F+Y P+ G++IAFKD++F KGI GSDW+ Sbjct: 2 KNGVIRELFKNRTLLLMFLPVAVLLF--LFNYLPLAGLVIAFKDFDFTKGIFGSDWMDPL 59 Query: 67 FKNFDYFFTSDDFWVILRNTLVLNILFILFTTVAAILIALMFNEIRNKYFKRISQSLIFL 126 F NFDY F+SD + +RNT++LN LFI + + AL+ NE+RNKYFKR+SQSL FL Sbjct: 60 FDNFDYLFSSDTAFRAVRNTILLNALFITVGLIFEVGFALLLNEVRNKYFKRVSQSLTFL 119 Query: 127 PYFMSWIVVGMIVQSLFGGEEPMINTWLQYIGLEPVNWMFESKLWPYILTVIRVWQGAGY 186 P+F+SWIVVG+ +L E +N +L IGL+P+++ E+ LWP ILT+ W+ GY Sbjct: 120 PFFISWIVVGVFAYNLLDFESGAVNHFLTTIGLQPIDFYSEAGLWPIILTIAVRWKATGY 179 Query: 187 LSIIFLAAITGISEDLYEAARIDGASKLQIVLRITLPLLVPTIMIMTLLAVGKIFNGDFA 246 +II+LAA+T + YEAA IDGA++ Q + I+LP+L PTI+I+TLLAVG+I N DF Sbjct: 180 GTIIYLAALTSVDNSYYEAASIDGATRWQQIRYISLPMLRPTIIILTLLAVGRIMNADFG 239 Query: 247 MIYAIIGDNSMLYPTTDVIDTFVFRSMRQLHDFGMSSAVGLFQSIMGLIFVITANWITRR 306 M YA++GD S+L+PTTDVIDTFV+RS+R+ D GM+SA G QS++ + VI +N+ R+ Sbjct: 240 MFYAMVGDASLLFPTTDVIDTFVYRSLRKSGDIGMASAAGFLQSMIAFVLVIASNYAARK 299 Query: 307 VSKESALF 314 + K+SA+F Sbjct: 300 IDKDSAIF 307 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.145 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,787,421,805 Number of extensions: 73514134 Number of successful extensions: 267119 Number of sequences better than 1.0e-05: 5894 Number of HSP's gapped: 261349 Number of HSP's successfully gapped: 5895 Length of query: 314 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 179 Effective length of database: 1,788,859,178 Effective search space: 320205792862 Effective search space used: 320205792862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 131 (55.1 bits)