BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0007.p (814 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0GTT2.1 C0GTT2_9DELT Type III restriction protein res subunit 837 0.0 C1TGQ2.1 C1TGQ2_9FIRM Uncharacterized conserved protein 733 0.0 Q5WTN6.1 Q5WTN6_LEGPL Putative uncharacterized protein 733 0.0 B9E493.1 B9E493_CLOK1 Putative uncharacterized protein 731 0.0 A5N0C5.1 A5N0C5_CLOK5 Predicted helicase 731 0.0 >C0GTT2.1 C0GTT2_9DELT Type III restriction protein res subunit Length = 805 Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/822 (50%), Positives = 551/822 (67%), Gaps = 38/822 (4%) Query: 1 MDNIEDKYS------AALTQIKELKQEIARLRSLLGLVDDDNITSTNEQITSYFTSPAKV 54 MD+I DK S +A + L+ E RLR+ LGL T T E+ S S + Sbjct: 4 MDDI-DKASLLQALKSAEAECLRLRAENERLRARLGLA-----TETLEEDKSKTPSLSTS 57 Query: 55 RKEP-TVGETNVHQYSTVGDKLALYRSYFRGRDDVYPIRWSNKQGKSGYSPACSNEWT-S 112 +EP + +V S+ +K+AL+R FRGR+DVYP+RW NKQG+SGY+PAC+NEW Sbjct: 58 LQEPHLLSSASVFCKSSPEEKIALFRQLFRGREDVYPVRWENKQGRSGYTPACANEWKRP 117 Query: 113 VCEKPRVKCSVCKHQSFMPLTSEVLSAHLDARQDRTIGIYPMLPDETCWFLAMDFDKHDW 172 +C KP+VKC C+ + P+T +V+ HL Q TIG+YP+LPD+TCWFLA DFDK W Sbjct: 118 LCGKPKVKCGQCESRLLKPVTDQVVFDHLAGNQ--TIGVYPLLPDDTCWFLAADFDKKSW 175 Query: 173 KQDVAAVMQLCKSHEIPALLERSRSGNGGHIWIFFRQNIEAAIARRFGMTLLSLAMNKRY 232 ++D A +++C+ EIPA LERSRSGNGGH+WIFF + A AR+ G +L+ AM +R Sbjct: 176 QEDAAVFLEICREMEIPASLERSRSGNGGHVWIFFNSPVSAHNARKLGCAVLTRAMERRR 235 Query: 233 QIGMESYDRLFPNQDTLPKGGFGNLIALPLQGGPRKQGNSVFVDERFEPYADQWGILSEL 292 ++G +SYDR FPNQDTLPKGGFGNLIALPLQ PR +G+SVF+D +PY DQW LS + Sbjct: 236 ELGFDSYDRFFPNQDTLPKGGFGNLIALPLQYYPRARGHSVFIDSSLQPYPDQWAFLSGV 295 Query: 293 GRMGEDEVKQFIYKHGERGLFNNDALIAASGDEGIGLAEVRESCVQDEPVLMEA-LPAEI 351 M +V+ +++ G+RG A + S +E + P + LP E Sbjct: 296 NTMSPADVEALVHEAGQRGAV---AGVPDSVEEDTRRPWTLPPSGKKPPEGVSGPLPREA 352 Query: 352 QILYSDRLYILKSGLPSSAIHALIKLASFSNPDFYKAQAMRLSTYGKPRVISCAEDLESY 411 ++ +++Y++K GLP+ ++ L ++A+F NP+FY+AQAMRLST+GKPR+I+C E+ + Sbjct: 353 SLIQGNQIYVVKGGLPAEVLNRLTRMATFQNPEFYRAQAMRLSTFGKPRIINCTEEFPDH 412 Query: 412 IVLPRGCLPELLSFFEHNHVKVSLDDRRSSGTPIEAEFTGTLTTLQDTAARAILNRDMGV 471 + LPRGCL E L F + V+V++ D R++G I+ F G LT Q AA+A+ D GV Sbjct: 413 LALPRGCLEEALVFLKSLGVQVNISDHRNTGQAIDIGFNGALTPEQHRAAQAMAEHDNGV 472 Query: 472 LSAATAFGKTVVAASIIASRKTNTLILVHRRELMEQWQERLQTFLEVPKHSIGMIGGGKN 531 LSAATAFGKTVVAA +IA RK NTLILVHR++LM+QWQERL TFL++P +SIG GGGKN Sbjct: 473 LSAATAFGKTVVAAWLIAERKVNTLILVHRKQLMDQWQERLGTFLDLPANSIGRFGGGKN 532 Query: 532 KRTGIIDIAVIQSLNYKGNVKPFVSEYGQVIVDECHHVSAYSFEQVLREVKARYVFGLTA 591 + +G++DIA +QSLN KG V ++YG +IVDECHHVSA+SFEQVLR+ KARYV GLTA Sbjct: 533 RVSGVVDIATLQSLNRKGEVLDLAADYGHIIVDECHHVSAFSFEQVLRKAKARYVCGLTA 592 Query: 592 TPKRQDGQEAIVRFQLGPVLMKIDAKTLSSSRGFSLRVVPRYTHFQIKPEEKVSGIQDIY 651 TP R+DG I+ Q F VVPR T F + GIQ++Y Sbjct: 593 TPIRKDGHHPIIFMQ------------------FEHVVVPRRTDFALPANMDNPGIQEVY 634 Query: 652 QLLVDNEERNTLIFDDLLTCLDEGRSPLLLVERTAHAEYFAKRLQAFAKNVIVLSGRMGK 711 L +E RN +I +DL L++G SP+LL +H E KRLQ F +NVIVL G MGK Sbjct: 635 SALAGDEARNEMILNDLFNALEDGCSPILLARLVSHVEELEKRLQNFVRNVIVLRGGMGK 694 Query: 712 KQREALRAQIASIPDDQERVVIATGKLIGEGFDDARLDTLFLVHPISWSGTLQQYAGRLH 771 KQR+A+ ++A++PD +ERV+IATG IGEGFDDARLDTLFL+ P+SW GTLQQYAGRLH Sbjct: 695 KQRQAVFERLAAVPDTEERVLIATGSYIGEGFDDARLDTLFLLSPVSWRGTLQQYAGRLH 754 Query: 772 RSHANKEEVKIYDYIDLQVPMLMAMFRKRVKGYRKMGYKGAE 813 R H+NK IYDY+D VP L MF+KR+ GYR MGYK AE Sbjct: 755 RMHSNKRRALIYDYVDEHVPQLARMFQKRLAGYRAMGYKTAE 796 >C1TGQ2.1 C1TGQ2_9FIRM Uncharacterized conserved protein Length = 971 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/833 (45%), Positives = 527/833 (63%), Gaps = 46/833 (5%) Query: 7 KYSAALTQIKELKQEIARLRSLLGLVDDDNITSTNEQITSYFTSPAKVRKEPTVGE---T 63 KY A L + LK EI L++ LG+V+ +T + S AKV K+ V + + Sbjct: 9 KYQAVLVENNNLKIEINNLKAQLGIVEQHYVTDKVYKQKSI----AKVLKQEPVNKVLLS 64 Query: 64 NVHQYSTVGDKLALYRSYFRGRDDVYPIRW-SNKQGKSGYSPACSNEWTS-VCEKPRVKC 121 ++ Y+T +K+ L+ S F+GR+DVY RW S K+ K+GYSP C NEW S VC KP++KC Sbjct: 65 GMNIYATPIEKIKLFMSLFKGREDVYAKRWESKKKVKNGYSPVCLNEWKSGVCSKPKIKC 124 Query: 122 SVCKHQSFMPLTSEVLSAHLDARQDRTIGIYPMLPDETCWFLAMDFDKHDWKQDVAAVMQ 181 C +++ L +V+ HL + + +GIYP+ DETC+FLA+DFD W++D++ + + Sbjct: 125 DHCIKKAYAALDEKVIEEHL--KGNIVVGIYPLCLDETCYFLAIDFDDEGWQKDISVLRE 182 Query: 182 LCKSHEIPALLERSRSGNGGHIWIFFRQNIEAAIARRFGMTLLSLAMNKRYQIGMESYDR 241 +C + IP +ERS SGNG H W FF I A +AR+ G LL+ +M+KR++I ESYDR Sbjct: 183 VCMEYNIPVAVERSCSGNGAHAWFFFENKISAVLARKLGTALLTYSMSKRHEITFESYDR 242 Query: 242 LFPNQDTLPKGGFGNLIALPLQGGPRKQGNSVFVDERFEPYADQWGILSELGRMGEDEVK 301 FP+QDTLPKGG GNLIALPLQ RK NSVF+DE EPYADQWG L+ + ++ E +++ Sbjct: 243 FFPSQDTLPKGGLGNLIALPLQKAARKYNNSVFIDENLEPYADQWGFLAAIKKLSEYDIE 302 Query: 302 QFIYK--HG-ERGLFNNDALIAASGDEGIGLAEVRESCVQDEPVLMEALPAEIQILYSDR 358 I K HG E G+ D + AE++ + PA+++++ ++ Sbjct: 303 MLISKLYHGNELGVLKKD---DEDDQKPWETAEIK--------LTKNDFPADLKVVKANM 351 Query: 359 LYILKSGLPSSAIHALIKLASFSNPDFYKAQAMRLSTYGKPRVISCAEDLESYIVLPRGC 418 L+I KSG+ A++ + +LA+F NP+FYKAQAMR+ST+ KPR+ISCA+++ Y+ LPRGC Sbjct: 352 LFIEKSGISQRALNYIKRLAAFKNPEFYKAQAMRMSTFKKPRIISCADEVGKYLCLPRGC 411 Query: 419 LPELLSFFEHNHVKVSLDDRRSSGTPIEAEFTGTLTTLQDTAARAILNRDMGVLSAATAF 478 +L++ + + S D + G I+ EF G+L Q A +L D GVLS TAF Sbjct: 412 EVDLIAVLKELEIAASWIDNTNCGRNIDVEFNGSLRDEQLLAINELLKYDNGVLSGTTAF 471 Query: 479 GKTVVAASIIASRKTNTLILVHRRELMEQWQERLQTFLEV----PKHS------------ 522 GKTVV+ +IA RK NTLILV R L+ QW+ +L FL + P+ + Sbjct: 472 GKTVVSIKLIAERKVNTLILVDRVSLVSQWKNKLAEFLSINELLPEMNQTKKRGRKKAES 531 Query: 523 -IGMIGGGKNKRTGIIDIAVIQSLNYKGNVKPFVSEYGQVIVDECHHVSAYSFEQVLREV 581 IG IG GK+ GIIDIAV+QSLN G VK V YG VIVDECHH+SA+SFE++L+ Sbjct: 532 FIGQIGAGKDSLGGIIDIAVMQSLNRMGEVKDCVKNYGMVIVDECHHISAFSFEKILKNT 591 Query: 582 KARYVFGLTATPKRQDGQEAIVRFQLGPVLMKIDAKTLSSSRGFSLRVVPRYTHFQI--- 638 A+YV+GLTATP R+DG I+ Q GP+ + +AK + R F ++PR+T ++ Sbjct: 592 NAKYVYGLTATPTRKDGHHPIIFMQCGPIRYRDNAKKQAEKRPFEHFIIPRFTPLRVPLD 651 Query: 639 KPEEKVSGIQDIYQLLVDNEERNTLIFDDLLTCLDEGRSPLLLVERTAHAEYFAKRLQAF 698 K E VS IQ++Y +V NE RN LI DD++ + R+ ++L +RTAH E AK+L Sbjct: 652 KNERDVS-IQELYSEIVVNEMRNQLIVDDVVRSFENNRNCIVLTQRTAHVELLAKKLSER 710 Query: 699 AKNVIVLSGRMGKKQREALRAQIASIPDDQERVVIATGKLIGEGFDDARLDTLFLVHPIS 758 NVI L+G MG+K + +IA P D++ ++IATGK IGEGFD+ RLDTLFL PIS Sbjct: 711 IPNVISLTGGMGRKHTREILTKIAETPTDKQLILIATGKYIGEGFDEPRLDTLFLAMPIS 770 Query: 759 WSGTLQQYAGRLHRSHANKEEVKIYDYIDLQVPMLMAMFRKRVKGYRKMGYKG 811 W GTLQQYAGRLHR + NK EV+IYDY+D+ V ML M+ KR+ GY +GYK Sbjct: 771 WKGTLQQYAGRLHRLYENKNEVQIYDYVDIHVRMLEKMYHKRLTGYASIGYKA 823 >Q5WTN6.1 Q5WTN6_LEGPL Putative uncharacterized protein Length = 925 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/761 (47%), Positives = 506/761 (66%), Gaps = 27/761 (3%) Query: 65 VHQYSTVGDKLALYRSYFRGRDDVYPIRWSN-KQGKSGYSPACSNEWT-SVCEKPRVKCS 122 ++Q+S+ +K+AL++S FRGR DVYP R+ N K KSGY+PAC NEW +VC+KPR+KC+ Sbjct: 2 INQHSSTAEKIALFQSLFRGRSDVYPRRFQNRKTHKSGYAPACKNEWVRNVCQKPRIKCT 61 Query: 123 VCKHQSFMPLTSEVLSAHL----DARQDRTIGIYPMLPDETCWFLAMDFDKHDWKQDVAA 178 C+H+ F+P+ EV+ HL + QD +GIYPML DE+C+FLA DFDK W+QD A Sbjct: 62 DCQHRQFIPIDDEVIYWHLQGYDNKGQDFVMGIYPMLLDESCYFLAADFDKATWEQDAVA 121 Query: 179 VMQLCKSHEIPALLERSRSGNGGHIWIFFRQNIEAAIARRFGMTLLSLAMNKRYQIGMES 238 ++ C +PA+LERSRSGNG H+W+FF ++I AA+AR+ G ++L+ AM ++G++S Sbjct: 122 FLKTCHQKNLPAVLERSRSGNGAHVWLFFEESIPAALARKLGASILTEAMESNPEVGLDS 181 Query: 239 YDRLFPNQDTLPKGGFGNLIALPLQGGPRKQGNSVFVDERFEPYADQWGILSELGRMGED 298 YDR FPNQDTLP+GGFGNLIALPLQ R GNSVF+DE+ + DQW L+ + ++ Sbjct: 182 YDRFFPNQDTLPRGGFGNLIALPLQKAARHTGNSVFIDEQLQIIEDQWAYLAGIKKITRF 241 Query: 299 EVKQFIYKHGERGLFNNDALIAASGDEGIGL--AEVRESCVQDEPV---LMEALPAEIQI 353 E++Q + NDA A GI L E PV +++ LP I + Sbjct: 242 EIEQLV----------NDAE-AKGRVVGIRLEITEEENRTPWKPPVPLPIIDTLPKTIHL 290 Query: 354 LYSDRLYILKSGLPSSAIHALIKLASFSNPDFYKAQAMRLSTYGKPRVISCAEDLESYIV 413 + S+ ++I K LPS ++ LI++A+F NPDFYKAQAMRL Y KPR+I CA D +I Sbjct: 291 VISNEIFIEKESLPSPLLNRLIRIAAFQNPDFYKAQAMRLPVYEKPRIIGCARDYSHHIG 350 Query: 414 LPRGCLPELLSFFEHNHVKVSLDDRRSSGTPIEAEFTGTLTTLQDTAARAILNRDMGVLS 473 LPRGC ++ +K ++ + +G PI+ +F G L Q A++ D+GVLS Sbjct: 351 LPRGCFDDITKLLRELKIKYTIQEELFAGEPIDIQFCGELRPEQQITVDALIKSDIGVLS 410 Query: 474 AATAFGKTVVAASIIASRKTNTLILVHRRELMEQWQERLQTFLEVPKHSIGMIGGGKNKR 533 A TAFGKTVVAA +IA RKTNTLI+VH ++L +QW ERLQTFL +P IG GGG+ K Sbjct: 411 ATTAFGKTVVAAWMIAKRKTNTLIVVHTKQLQDQWVERLQTFLGLPAKKIGRFGGGRKKI 470 Query: 534 TGIIDIAVIQSLNYKGNVKPFVSEYGQVIVDECHHVSAYSFEQVLREVKARYVFGLTATP 593 TG IDIA+IQSL +++ +S+YG VIVDECHH+ + SF+ ++R+VKAR++ GL+AT Sbjct: 471 TGFIDIALIQSLTKHTDIESMISQYGYVIVDECHHIPSVSFDDIIRQVKARFITGLSATL 530 Query: 594 KRQDGQEAIVRFQLGPVLMKIDAKTLSSSRGFSLRVVPRYTHF----QIKPEEKVSGIQD 649 R+DG+ I+ + GP+L ++DAK +S R F V R T F QI ++ QD Sbjct: 531 VRKDGRHPIIMMRCGPILHRVDAKAQASVRPFEHYVFVRPTSFRPYKQIHENLRIQ-FQD 589 Query: 650 IYQLLVDNEERNTLIFDDLLTCLDEGRSPLLLVERTAHAEYFAKRLQAFAKNVIVLSGRM 709 +Y+ L+ ++ RN +I +D++ + +GRSP++L ER H + ++L + +++IVL G + Sbjct: 590 LYEELIHDDYRNQMICNDVIHAVKKGRSPIILTERNEHLDILHQQLISEVQHLIVLKGGL 649 Query: 710 GKKQREALRAQIASIPDDQERVVIATGKLIGEGFDDARLDTLFLVHPISWSGTLQQYAGR 769 K+ + +Q+ SIP ++ERVV+ATG+ +GEGFDDARLDTL L PISW GT+ QY GR Sbjct: 650 NVKEMKQAVSQLISIPLNEERVVLATGRFVGEGFDDARLDTLLLTLPISWKGTIAQYVGR 709 Query: 770 LHRSHANKEEVKIYDYIDLQVPMLMAMFRKRVKGYRKMGYK 810 LHR H K+EV +YDY D VPML MF++R Y +GYK Sbjct: 710 LHRLHDTKKEVHVYDYADFAVPMLERMFQRRSSAYESVGYK 750 >B9E493.1 B9E493_CLOK1 Putative uncharacterized protein Length = 968 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/835 (44%), Positives = 522/835 (62%), Gaps = 54/835 (6%) Query: 6 DKYSAALTQIKELKQEIARLRSLLGL------VDDD--NITSTNEQITSYFTSPAKVRKE 57 D+Y L + K LK++ LR + L +DD +T TN + +R Sbjct: 8 DRYVKLLEENKMLKEKNKNLREYIRLQVPNLFMDDKCKELTKTN--------TDTSIRGN 59 Query: 58 PTVGETNVHQYSTVGDKLALYRSYFRGRDDVYPIRWSNKQGKSGYSPACSNEWT-SVCEK 116 + V++ S DK+ L+ S F+GR+DVY RW ++ GKSGYSP C NEW +C K Sbjct: 60 KCI---QVNKNSAPKDKIRLFMSLFKGREDVYAKRWQSENGKSGYSPVCVNEWVRGMCYK 116 Query: 117 PRVKCSVCKHQSFMPLTSEVLSAHLDARQDRTIGIYPMLPDETCWFLAMDFDKHDWKQDV 176 P+VKCS CK++ + PL + HL R +GIYPM+ DETC+F+A+DFD W+ D+ Sbjct: 117 PKVKCSECKNKKYAPLNENAIDRHL--RGIEVLGIYPMIKDETCYFVAIDFDDDGWENDI 174 Query: 177 AAVMQLCKSHEIPALLERSRSGNGGHIWIFFRQNIEAAIARRFGMTLLSLAMNKRYQIGM 236 + + ++C +IP +ERSRSGNG H+W FF++ I AA AR+F LL+ AM KRY+I Sbjct: 175 SILQEICIEKKIPFAVERSRSGNGAHLWFFFKEKIAAASARKFATALLTYAMTKRYKIKF 234 Query: 237 ESYDRLFPNQDTLPKGGFGNLIALPLQGGPRKQGNSVFVDERFEPYADQWGILSELGRMG 296 +SYDRLFPNQDT+PKGG GNLIALP+Q RK N+VFVD+ F+PY DQW LS + ++ Sbjct: 235 KSYDRLFPNQDTMPKGGLGNLIALPMQKFVRKNNNTVFVDKNFKPYEDQWKFLSSVEKLI 294 Query: 297 EDEVKQFIYK---HGERGLFNNDALIAASGDEGIGLAEVRESCVQDEPVLMEALPAEIQI 353 ++++ +I + + E G D + G E+R+ ++D P I Sbjct: 295 RNQIECYISEICTNSELGDLKEDK--EETDKPWKGNNEIRKLSIED-------FPDNAHI 345 Query: 354 LYSDRLYILKSGLPSSAIHALIKLASFSNPDFYKAQAMRLSTYGKPRVISCAEDLESYIV 413 + ++ L+I K G + ++++ ++A+F NP+FYKAQA+RLST+ KPRVIS +E+ Y+ Sbjct: 346 IKANMLFISKEGFSNRTLNSIKRIAAFKNPEFYKAQALRLSTFDKPRVISLSEETSEYLC 405 Query: 414 LPRGCLPELLSFFEHNHVKVSLDDRRSSGTPIEAEFTGTLTTLQDTAARAILNRDMGVLS 473 +PRGC EL +F + N V +D SG I F G L Q A A+L D GVLS Sbjct: 406 IPRGCEMELNNFLKENKVGFEYNDNTYSGRIISVLFNGKLGEEQAVAVDALLKFDNGVLS 465 Query: 474 AATAFGKTVVAASIIASRKTNTLILVHRRELMEQWQERLQTFLEVPKH------------ 521 AAT FGKTV+ A +IA RK +TL++VH R+L+EQW+E+L+ FL + + Sbjct: 466 AATGFGKTVLGAKLIAERKVSTLVIVHTRQLLEQWKEKLKYFLIIDESLAIDKTKRKGRK 525 Query: 522 ----SIGMIGGGKNKRTGIIDIAVIQSLNYKGNVKPFVSEYGQVIVDECHHVSAYSFEQV 577 IG IG GKN GI+DIA++QSL KG VK V +YG V+VDECHH SA++FE + Sbjct: 526 KNIDVIGQIGSGKNNLNGIVDIAIMQSLVRKGEVKELVKDYGMVLVDECHHASAFNFELI 585 Query: 578 LREVKARYVFGLTATPKRQDGQEAIVRFQLGPVLMKIDAKTLSSSRGFSLRVVPRYTHFQ 637 L+ + A+YV+GLTATP R+DG I+ Q GPV +++AK + F V+PR+T F+ Sbjct: 586 LKSISAKYVYGLTATPIRKDGHHPIIFMQCGPVRYRVNAKKQAEKSSFEHYVIPRFTSFR 645 Query: 638 IKP---EEKVSGIQDIYQLLVDNEERNTLIFDDLLTCLDEGRSPLLLVERTAHAEYFAKR 694 KP EK I +IY ++ ++ RN LI DD+ C+ EGR+P++L ERT+H E + Sbjct: 646 -KPVCQNEKEWSISEIYSVIGTSQIRNNLIIDDVTNCVKEGRNPIVLTERTSHVEILSDM 704 Query: 695 LQAFAKNVIVLSGRMGKKQREALRAQIASIPDDQERVVIATGKLIGEGFDDARLDTLFLV 754 L+ VI L+G+M K+R++ ++ +IP V++ATG+ IGEGFD+ RLDTLFL Sbjct: 705 LKEKLSYVITLTGKMSAKERKSEFDKLLNIPTGNSVVIVATGRFIGEGFDEPRLDTLFLA 764 Query: 755 HPISWSGTLQQYAGRLHRSHANKEEVKIYDYIDLQVPMLMAMFRKRVKGYRKMGY 809 PISW GTLQQYAGRLHR + NK EV+IYDY+D+ V +L M+ KR+KGY +GY Sbjct: 765 MPISWKGTLQQYAGRLHRIYENKNEVQIYDYVDVHVDVLERMYEKRLKGYAAIGY 819 >A5N0C5.1 A5N0C5_CLOK5 Predicted helicase Length = 968 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/835 (44%), Positives = 522/835 (62%), Gaps = 54/835 (6%) Query: 6 DKYSAALTQIKELKQEIARLRSLLGL------VDDD--NITSTNEQITSYFTSPAKVRKE 57 D+Y L + K LK++ LR + L +DD +T TN + +R Sbjct: 8 DRYVKLLEENKMLKEKNKNLREYIRLQVPNLFMDDKCKELTKTN--------TDTSIRGN 59 Query: 58 PTVGETNVHQYSTVGDKLALYRSYFRGRDDVYPIRWSNKQGKSGYSPACSNEWT-SVCEK 116 + V++ S DK+ L+ S F+GR+DVY RW ++ GKSGYSP C NEW +C K Sbjct: 60 KCI---QVNKNSAPKDKIRLFMSLFKGREDVYAKRWQSENGKSGYSPVCVNEWVRGMCYK 116 Query: 117 PRVKCSVCKHQSFMPLTSEVLSAHLDARQDRTIGIYPMLPDETCWFLAMDFDKHDWKQDV 176 P+VKCS CK++ + PL + HL R +GIYPM+ DETC+F+A+DFD W+ D+ Sbjct: 117 PKVKCSECKNKKYAPLNENAIDRHL--RGIEVLGIYPMIKDETCYFVAIDFDDDGWENDI 174 Query: 177 AAVMQLCKSHEIPALLERSRSGNGGHIWIFFRQNIEAAIARRFGMTLLSLAMNKRYQIGM 236 + + ++C +IP +ERSRSGNG H+W FF++ I AA AR+F LL+ AM KRY+I Sbjct: 175 SILQEICIEKKIPFAVERSRSGNGAHLWFFFKEKIAAASARKFATALLTYAMTKRYKIKF 234 Query: 237 ESYDRLFPNQDTLPKGGFGNLIALPLQGGPRKQGNSVFVDERFEPYADQWGILSELGRMG 296 +SYDRLFPNQDT+PKGG GNLIALP+Q RK N+VFVD+ F+PY DQW LS + ++ Sbjct: 235 KSYDRLFPNQDTMPKGGLGNLIALPMQKFVRKNNNTVFVDKNFKPYEDQWKFLSSVEKLI 294 Query: 297 EDEVKQFIYK---HGERGLFNNDALIAASGDEGIGLAEVRESCVQDEPVLMEALPAEIQI 353 ++++ +I + + E G D + G E+R+ ++D P I Sbjct: 295 RNQIECYISEICTNSELGDLKEDK--EETDKPWKGNNEIRKLSIED-------FPDNAHI 345 Query: 354 LYSDRLYILKSGLPSSAIHALIKLASFSNPDFYKAQAMRLSTYGKPRVISCAEDLESYIV 413 + ++ L+I K G + ++++ ++A+F NP+FYKAQA+RLST+ KPRVIS +E+ Y+ Sbjct: 346 IKANMLFISKEGFSNRTLNSIKRIAAFKNPEFYKAQALRLSTFDKPRVISLSEETSEYLC 405 Query: 414 LPRGCLPELLSFFEHNHVKVSLDDRRSSGTPIEAEFTGTLTTLQDTAARAILNRDMGVLS 473 +PRGC EL +F + N V +D SG I F G L Q A A+L D GVLS Sbjct: 406 IPRGCEMELNNFLKENKVGFEYNDNTYSGRIISVLFNGKLGEEQAVAVDALLKFDNGVLS 465 Query: 474 AATAFGKTVVAASIIASRKTNTLILVHRRELMEQWQERLQTFLEVPKH------------ 521 AAT FGKTV+ A +IA RK +TL++VH R+L+EQW+E+L+ FL + + Sbjct: 466 AATGFGKTVLGAKLIAERKVSTLVIVHTRQLLEQWKEKLKYFLIIDESLAIDKTKRKGRK 525 Query: 522 ----SIGMIGGGKNKRTGIIDIAVIQSLNYKGNVKPFVSEYGQVIVDECHHVSAYSFEQV 577 IG IG GKN GI+DIA++QSL KG VK V +YG V+VDECHH SA++FE + Sbjct: 526 KNIDVIGQIGSGKNNLNGIVDIAIMQSLVRKGEVKELVKDYGMVLVDECHHASAFNFELI 585 Query: 578 LREVKARYVFGLTATPKRQDGQEAIVRFQLGPVLMKIDAKTLSSSRGFSLRVVPRYTHFQ 637 L+ + A+YV+GLTATP R+DG I+ Q GPV +++AK + F V+PR+T F+ Sbjct: 586 LKSISAKYVYGLTATPIRKDGHHPIIFMQCGPVRYRVNAKKQAEKSSFEHYVIPRFTSFR 645 Query: 638 IKP---EEKVSGIQDIYQLLVDNEERNTLIFDDLLTCLDEGRSPLLLVERTAHAEYFAKR 694 KP EK I +IY ++ ++ RN LI DD+ C+ EGR+P++L ERT+H E + Sbjct: 646 -KPVCQNEKEWSISEIYSVIGTSQIRNNLIIDDVTNCVKEGRNPIVLTERTSHVEILSDM 704 Query: 695 LQAFAKNVIVLSGRMGKKQREALRAQIASIPDDQERVVIATGKLIGEGFDDARLDTLFLV 754 L+ VI L+G+M K+R++ ++ +IP V++ATG+ IGEGFD+ RLDTLFL Sbjct: 705 LKEKLSYVITLTGKMSAKERKSEFDKLLNIPTGNSVVIVATGRFIGEGFDEPRLDTLFLA 764 Query: 755 HPISWSGTLQQYAGRLHRSHANKEEVKIYDYIDLQVPMLMAMFRKRVKGYRKMGY 809 PISW GTLQQYAGRLHR + NK EV+IYDY+D+ V +L M+ KR+KGY +GY Sbjct: 765 MPISWKGTLQQYAGRLHRIYENKNEVQIYDYVDVHVDVLERMYEKRLKGYAAIGY 819 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,810,482,214 Number of extensions: 206042665 Number of successful extensions: 481253 Number of sequences better than 1.0e-05: 800 Number of HSP's gapped: 480368 Number of HSP's successfully gapped: 809 Length of query: 814 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 670 Effective length of database: 1,704,070,043 Effective search space: 1141726928810 Effective search space used: 1141726928810 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)