BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0126.0003.p
         (88 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A7BYG9.1 A7BYG9_9GAMM Putative uncharacterized protein                 88   3e-16
A7C2K3.1 A7C2K3_9GAMM Putative uncharacterized protein                 82   2e-14
C5D7S8.1 C5D7S8_9BACI Putative uncharacterized protein                 80   5e-14
A7C4D8.1 A7C4D8_9GAMM Putative uncharacterized protein                 79   1e-13
C1TBB6.1 C1TBB6_9FIRM Putative uncharacterized protein                 76   1e-12

>A7BYG9.1 A7BYG9_9GAMM Putative uncharacterized protein
          Length = 86

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 63/83 (75%), Gaps = 1/83 (1%)

Query: 4  MRWDEVQERFPNEWVVLEATNAYSKEGQRFIEEMSVIDSYEDSTKALKRYSELHQEDPHR 63
          M W+E++  FP++W++LEA  AYS++G+R ++++SV++++ DS  A+K Y++LH E P R
Sbjct: 1  MTWEEIRRHFPHQWLLLEAMEAYSEQGKRIVKQLSVLNTFSDSVAAMKAYAKLHHEMPTR 60

Query: 64 EYCFFHTSRPEVVARER-YVGIR 85
          E+  FHT R ++  +ER ++GIR
Sbjct: 61 EFLVFHTDREQLDIQERSWLGIR 83


>A7C2K3.1 A7C2K3_9GAMM Putative uncharacterized protein
          Length = 90

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 58/84 (69%), Gaps = 1/84 (1%)

Query: 4  MRWDEVQERFPNEWVVLEATNAYSKEGQRFIEEMSVIDSYEDSTKALKRYSELHQEDPHR 63
          MRW++++  +P++W+++E   A+S+ GQR +EE++V++ + D+  ALK Y  LH++ P R
Sbjct: 1  MRWEKIRVHYPHQWLLVEVIKAHSEAGQRIVEELTVVNVFPDARAALKSYITLHRQSPQR 60

Query: 64 EYCFFHTSRPEV-VARERYVGIRG 86
          E    HT R  + V  +R++GIRG
Sbjct: 61 ELLVLHTDRETLQVTEQRWLGIRG 84


>C5D7S8.1 C5D7S8_9BACI Putative uncharacterized protein
          Length = 86

 Score = 80.1 bits (196), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 60/84 (71%), Gaps = 1/84 (1%)

Query: 4  MRWDEVQERFPNEWVVLEATNAYSKEGQRFIEEMSVIDSYEDSTKALKRYSELHQEDPHR 63
          M+W E+++++PN++V++EA +AYS+ G+R I+EM+VID Y  ++ A   Y + H+  P +
Sbjct: 1  MKWSELRKQYPNQFVLVEAISAYSQNGKRIIKEMAVIDRYNSASDAWNGYKQQHRTFPEK 60

Query: 64 EYCFFHTSRPEVVARERY-VGIRG 86
          E   FHTS+ ++   E+Y +GIRG
Sbjct: 61 ELYIFHTSKEQIEVEEQYFIGIRG 84


>A7C4D8.1 A7C4D8_9GAMM Putative uncharacterized protein
          Length = 89

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 59/84 (70%), Gaps = 1/84 (1%)

Query: 4  MRWDEVQERFPNEWVVLEATNAYSKEGQRFIEEMSVIDSYEDSTKALKRYSELHQEDPHR 63
          MRW++++  +P++W+++EA  A+S+ GQR +EE++V++ + +   ALK Y +LH++ P R
Sbjct: 1  MRWEQIRSHYPHQWLLVEAIKAHSEAGQRILEELTVVNVFPNPRLALKAYIKLHRQSPQR 60

Query: 64 EYCFFHTSRPEV-VARERYVGIRG 86
          E    HT R  + +  ++++G+RG
Sbjct: 61 ELLVLHTDRETLQITEQKWLGVRG 84


>C1TBB6.1 C1TBB6_9FIRM Putative uncharacterized protein
          Length = 87

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 61/85 (71%), Gaps = 2/85 (2%)

Query: 4  MRWDEVQERFPNEWVVLEATNAYSKEGQRFIEEMSVIDSYE-DSTKALKRYSELHQEDPH 62
          M W+EV+  +PN+WV++EA  AY++  +R I +++V+++++ D+ KAL +Y +LH++   
Sbjct: 1  MIWEEVKNAYPNQWVIIEAIEAYTEGDKRIIAQITVVNNFQDDNNKALLQYLQLHRKHRE 60

Query: 63 REYCFFHTSRPEV-VARERYVGIRG 86
          RE    HTSRPE+ +  ++++G+R 
Sbjct: 61 RELYVVHTSRPELDIIEQKWIGVRA 85


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 526,811,591
Number of extensions: 17045531
Number of successful extensions: 45494
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 45494
Number of HSP's successfully gapped: 14
Length of query: 88
Length of database: 3,060,696,203
Length adjustment: 58
Effective length of query: 30
Effective length of database: 2,514,277,333
Effective search space: 75428319990
Effective search space used: 75428319990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)