BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0126.0001.p
         (139 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C1I735.1 C1I735_9CLOT ABC transporter ATP-binding protein             126   8e-28
C0D5I0.1 C0D5I0_9CLOT Putative uncharacterized protein                120   4e-26
B1C6X0.1 B1C6X0_9FIRM Putative uncharacterized protein                116   7e-25
A7FRW6.1 A7FRW6_CLOB1 ABC Transporter, ATP-binding protein            115   9e-25
A5HZQ2.1 A5HZQ2_CLOBH ABC Transporter, ATP-binding protein            115   9e-25

>C1I735.1 C1I735_9CLOT ABC transporter ATP-binding protein
          Length = 243

 Score =  126 bits (316), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 88/127 (69%), Gaps = 1/127 (0%)

Query: 3   LKVGNLTVTYGQKKAVDLISFEVKPGQAFGLLGANGAGKSSTIAAVLGIEKSTYDELVIV 62
           +K+ NL  +YG+ +AV  ISF V  G+ FGLLG NGAGKS+TI  VLG +K    ++ I+
Sbjct: 4   IKINNLCKSYGKFQAVKNISFSVNKGEVFGLLGENGAGKSTTIECVLGTKKFENGQISIL 63

Query: 63  GKSPIRNRKEIFEQVGVQFQETHFQDKLTVSDACAQWQSLYKKTADLPALLQTFGLADK- 121
           G +P R+RK++FE+VGVQFQE+++QDK+TV + C   +S YK T +   LL+ F L DK 
Sbjct: 64  GMNPQRDRKQLFERVGVQFQESNYQDKITVKELCELTKSFYKTTLNYTELLKEFNLLDKQ 123

Query: 122 KQQPGEL 128
           K Q  EL
Sbjct: 124 KSQVNEL 130


>C0D5I0.1 C0D5I0_9CLOT Putative uncharacterized protein
          Length = 243

 Score =  120 bits (301), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 85/124 (68%)

Query: 2   VLKVGNLTVTYGQKKAVDLISFEVKPGQAFGLLGANGAGKSSTIAAVLGIEKSTYDELVI 61
           V+KV  LT +YG   AVD +S  V  G  FGLLGANGAGKS+ I  +LG +K+    + I
Sbjct: 4   VIKVEQLTKSYGALTAVDRLSLSVDRGTVFGLLGANGAGKSTAIECILGTKKADSGSVSI 63

Query: 62  VGKSPIRNRKEIFEQVGVQFQETHFQDKLTVSDACAQWQSLYKKTADLPALLQTFGLADK 121
           +G +P  +R+++FE+VGVQFQE ++QDK+T+ + C    SLY++ AD  ALL  FGL+ +
Sbjct: 64  LGLNPGADRRKLFERVGVQFQEANYQDKITLWELCQVTTSLYRQPADPAALLDKFGLSGR 123

Query: 122 KQQP 125
           K+ P
Sbjct: 124 KRCP 127


>B1C6X0.1 B1C6X0_9FIRM Putative uncharacterized protein
          Length = 238

 Score =  116 bits (290), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 79/122 (64%)

Query: 3   LKVGNLTVTYGQKKAVDLISFEVKPGQAFGLLGANGAGKSSTIAAVLGIEKSTYDELVIV 62
           ++V NL+ +Y     V  +SF+VK G+ FGLLGANGAGKS+TI  +LG          I+
Sbjct: 5   IEVKNLSKSYQGVSVVKNLSFDVKRGEVFGLLGANGAGKSTTIECILGTRSMDSGSAFIL 64

Query: 63  GKSPIRNRKEIFEQVGVQFQETHFQDKLTVSDACAQWQSLYKKTADLPALLQTFGLADKK 122
           G SP   RK IFEQVGVQFQET++ DK+ + + C + +SLY  T D   LL+ FGL +K+
Sbjct: 65  GMSPKNERKNIFEQVGVQFQETNYPDKIKIWELCEETESLYNDTKDYNILLKEFGLYEKR 124

Query: 123 QQ 124
           + 
Sbjct: 125 KN 126


>A7FRW6.1 A7FRW6_CLOB1 ABC Transporter, ATP-binding protein
          Length = 243

 Score =  115 bits (289), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 79/120 (65%)

Query: 2   VLKVGNLTVTYGQKKAVDLISFEVKPGQAFGLLGANGAGKSSTIAAVLGIEKSTYDELVI 61
           V+KV NL  +YG  + V  IS  V  G+ FGLLGANGAGKS+TI  +LG +     E+ I
Sbjct: 3   VIKVNNLYKSYGNVQVVKNISLTVNKGEVFGLLGANGAGKSTTIDCILGTKNFDDGEVSI 62

Query: 62  VGKSPIRNRKEIFEQVGVQFQETHFQDKLTVSDACAQWQSLYKKTADLPALLQTFGLADK 121
           +G +P + RK +F++VGVQFQE+++QDK+TV + C   + LYK   D   LL+ F L DK
Sbjct: 63  LGMNPKKERKRLFQKVGVQFQESNYQDKITVKELCEITEVLYKNPLDFNKLLEQFDLQDK 122


>A5HZQ2.1 A5HZQ2_CLOBH ABC Transporter, ATP-binding protein
          Length = 243

 Score =  115 bits (289), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 79/120 (65%)

Query: 2   VLKVGNLTVTYGQKKAVDLISFEVKPGQAFGLLGANGAGKSSTIAAVLGIEKSTYDELVI 61
           V+KV NL  +YG  + V  IS  V  G+ FGLLGANGAGKS+TI  +LG +     E+ I
Sbjct: 3   VIKVNNLYKSYGNVQVVKNISLTVNKGEVFGLLGANGAGKSTTIDCILGTKNFDDGEVSI 62

Query: 62  VGKSPIRNRKEIFEQVGVQFQETHFQDKLTVSDACAQWQSLYKKTADLPALLQTFGLADK 121
           +G +P + RK +F++VGVQFQE+++QDK+TV + C   + LYK   D   LL+ F L DK
Sbjct: 63  LGMNPKKERKRLFQKVGVQFQESNYQDKITVKELCEITEVLYKNPLDFNKLLEQFDLQDK 122


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 792,967,429
Number of extensions: 29130573
Number of successful extensions: 217806
Number of sequences better than 1.0e-05: 4227
Number of HSP's gapped: 222161
Number of HSP's successfully gapped: 4236
Length of query: 139
Length of database: 3,060,696,203
Length adjustment: 103
Effective length of query: 36
Effective length of database: 2,090,331,658
Effective search space: 75251939688
Effective search space used: 75251939688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)