BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0026.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7A4.1 B3K7A4_9BACI UTP-glucose-1-phosphate uridylyltransferase 461 e-128 C3ATA8.1 C3ATA8_BACMY UTP--glucose-1-phosphate uridylyltransferase 448 e-124 C3BAV0.1 C3BAV0_BACMY UTP--glucose-1-phosphate uridylyltransferase 448 e-124 C3BSR1.1 C3BSR1_9BACI UTP--glucose-1-phosphate uridylyltransferase 448 e-124 C3ADJ9.1 C3ADJ9_BACMY UTP--glucose-1-phosphate uridylyltransferase 444 e-123 >B3K7A4.1 B3K7A4_9BACI UTP-glucose-1-phosphate uridylyltransferase Length = 290 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/286 (76%), Positives = 253/286 (88%) Query: 1 MKIRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAVASGIEDIIIVTGKGK 60 M IRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYI+EEAVASGIEDIIIVTGKGK Sbjct: 1 MNIRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIIEEAVASGIEDIIIVTGKGK 60 Query: 61 RAIEDHFDNSFELEFNLAEKQKWELLESVRKSSEMADIHYIRQKEPRGLGHAIWCARKFI 120 RAIEDHFD+SFELE NLAEK KW LLE VRK S MADIHYIRQKEP+GLGHAIWCARKFI Sbjct: 61 RAIEDHFDSSFELEHNLAEKGKWGLLEEVRKPSNMADIHYIRQKEPKGLGHAIWCARKFI 120 Query: 121 GNEPFAVLLGDDIVQADKPCLRQMIEVYEQYKSSIVGVQPVPWEDVSRYGLVDGTELAER 180 G+EPFAVLLGDDIV+++ PCL+QM++VY+ Y+S+IVGVQPV W +V RYG+VDG++ ++R Sbjct: 121 GDEPFAVLLGDDIVESEVPCLKQMMKVYDTYQSTIVGVQPVDWNEVDRYGIVDGSQKSDR 180 Query: 181 VYKANRLVEKPKREEAPSNLAILGRYILTPRIFDMLEEQQVGVGGEIQLTDAISRLSEVE 240 +Y+ +RLVEKP R+EAPSNLAI+GRYIL P IFD+LE Q+VG GEIQLTDA+S L+ Sbjct: 181 IYETSRLVEKPSRDEAPSNLAIMGRYILPPDIFDLLENQEVGKNGEIQLTDALSTLAHRS 240 Query: 241 RIIAYDFEGKRHDVGEKMGFIQTTIHYALQHEELKEGLLDYLKEVI 286 I AY F+G RHDVGEK+GFI+T+IHYALQ EEL+E LL YL V+ Sbjct: 241 PIYAYHFDGMRHDVGEKLGFIETSIHYALQREELREDLLAYLSGVL 286 >C3ATA8.1 C3ATA8_BACMY UTP--glucose-1-phosphate uridylyltransferase Length = 310 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/290 (73%), Positives = 251/290 (86%), Gaps = 1/290 (0%) Query: 2 KIRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAVASGIEDIIIVTGKGKR 61 K+RKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEA+ASGIEDIIIVTGKGKR Sbjct: 20 KVRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAIASGIEDIIIVTGKGKR 79 Query: 62 AIEDHFDNSFELEFNLAEKQKWELLESVRKSSEMADIHYIRQKEPRGLGHAIWCARKFIG 121 AIEDHFD+SFELE NL K K+E LE V++SS++ +IHYIRQKEP+GLGHA+WCARKFIG Sbjct: 80 AIEDHFDHSFELEQNLLSKGKYETLEKVQESSKI-NIHYIRQKEPKGLGHAVWCARKFIG 138 Query: 122 NEPFAVLLGDDIVQADKPCLRQMIEVYEQYKSSIVGVQPVPWEDVSRYGLVDGTELAERV 181 NEPFAVLLGDDIVQAD PCLRQ++ YE +SS++GVQ VP + RYG++D E +R Sbjct: 139 NEPFAVLLGDDIVQADTPCLRQLMNQYENTQSSVIGVQTVPENETHRYGIIDPLEQKDRS 198 Query: 182 YKANRLVEKPKREEAPSNLAILGRYILTPRIFDMLEEQQVGVGGEIQLTDAISRLSEVER 241 Y+ ++ VEKP + APSNLAI+GRY+LTP IF LE+QQ G GGEIQLTDAI RL+E++R Sbjct: 199 YQVSKFVEKPAKGTAPSNLAIMGRYVLTPEIFMFLEDQQTGAGGEIQLTDAIQRLNEIQR 258 Query: 242 IIAYDFEGKRHDVGEKMGFIQTTIHYALQHEELKEGLLDYLKEVINSEAL 291 + AYDFEGKR+DVGEK+GFIQTTI ALQHEELK+ LLDY+K+++ SE + Sbjct: 259 VFAYDFEGKRYDVGEKLGFIQTTIEMALQHEELKKELLDYMKKLVESEMV 308 >C3BAV0.1 C3BAV0_BACMY UTP--glucose-1-phosphate uridylyltransferase Length = 310 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/290 (73%), Positives = 250/290 (86%), Gaps = 1/290 (0%) Query: 2 KIRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAVASGIEDIIIVTGKGKR 61 K+RKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEA+ASGIEDIIIVTGKGKR Sbjct: 20 KVRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAIASGIEDIIIVTGKGKR 79 Query: 62 AIEDHFDNSFELEFNLAEKQKWELLESVRKSSEMADIHYIRQKEPRGLGHAIWCARKFIG 121 AIEDHFD+SFELE NL K K+E LE V++SS++ +IHYIRQKEP+GLGHA+WCARKFIG Sbjct: 80 AIEDHFDHSFELEQNLLSKGKYETLEKVQESSKI-NIHYIRQKEPKGLGHAVWCARKFIG 138 Query: 122 NEPFAVLLGDDIVQADKPCLRQMIEVYEQYKSSIVGVQPVPWEDVSRYGLVDGTELAERV 181 NEPFAVLLGDDIVQAD PCLRQ++ YE +SS++GVQ VP + RYG++D E +R Sbjct: 139 NEPFAVLLGDDIVQADTPCLRQLMNQYENTQSSVIGVQTVPENETHRYGIIDPLEQKDRS 198 Query: 182 YKANRLVEKPKREEAPSNLAILGRYILTPRIFDMLEEQQVGVGGEIQLTDAISRLSEVER 241 Y+ ++ VEKP + APSNLAI+GRY+LTP IF LE QQ G GGEIQLTDAI RL+E++R Sbjct: 199 YQVSKFVEKPAKGTAPSNLAIMGRYVLTPEIFMFLENQQTGAGGEIQLTDAIQRLNEIQR 258 Query: 242 IIAYDFEGKRHDVGEKMGFIQTTIHYALQHEELKEGLLDYLKEVINSEAL 291 + AYDFEGKR+DVGEK+GFIQTTI ALQHEELK+ LLDY+K+++ SE + Sbjct: 259 VFAYDFEGKRYDVGEKLGFIQTTIEMALQHEELKKELLDYMKKLVESEMV 308 >C3BSR1.1 C3BSR1_9BACI UTP--glucose-1-phosphate uridylyltransferase Length = 310 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/290 (72%), Positives = 251/290 (86%), Gaps = 1/290 (0%) Query: 2 KIRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAVASGIEDIIIVTGKGKR 61 K+RKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEA+ASGIEDIIIVTGKGKR Sbjct: 20 KVRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAIASGIEDIIIVTGKGKR 79 Query: 62 AIEDHFDNSFELEFNLAEKQKWELLESVRKSSEMADIHYIRQKEPRGLGHAIWCARKFIG 121 AIEDHFD+SFELE NL K K+E LE V++SS++ +IHYIRQKEP+GLGHA+WCARKFIG Sbjct: 80 AIEDHFDHSFELEQNLLSKGKYETLEKVQESSKI-NIHYIRQKEPKGLGHAVWCARKFIG 138 Query: 122 NEPFAVLLGDDIVQADKPCLRQMIEVYEQYKSSIVGVQPVPWEDVSRYGLVDGTELAERV 181 NEPFAVLLGDDIVQAD PCLRQ++ YE +SS++GVQ VP + RYG++D E +R Sbjct: 139 NEPFAVLLGDDIVQADTPCLRQLMNQYENTQSSVIGVQTVPENETHRYGIIDPLEKKDRS 198 Query: 182 YKANRLVEKPKREEAPSNLAILGRYILTPRIFDMLEEQQVGVGGEIQLTDAISRLSEVER 241 Y+ ++ VEKP + APSNLAI+GRY+LTP IF LE+QQ G GGEIQLTDAI RL+E++R Sbjct: 199 YQVSKFVEKPAKGTAPSNLAIMGRYVLTPEIFMFLEDQQTGAGGEIQLTDAIQRLNEIQR 258 Query: 242 IIAYDFEGKRHDVGEKMGFIQTTIHYALQHEELKEGLLDYLKEVINSEAL 291 + AYDFEGKR+DVGEK+GFIQTT+ ALQHEELK+ LLDY+K+++ SE + Sbjct: 259 VFAYDFEGKRYDVGEKLGFIQTTVEMALQHEELKKELLDYMKKLVESEMI 308 >C3ADJ9.1 C3ADJ9_BACMY UTP--glucose-1-phosphate uridylyltransferase Length = 293 Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/286 (73%), Positives = 248/286 (86%), Gaps = 1/286 (0%) Query: 3 IRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAVASGIEDIIIVTGKGKRA 62 ++KAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEA+ASGIEDIIIVTGKGKRA Sbjct: 4 VKKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAIASGIEDIIIVTGKGKRA 63 Query: 63 IEDHFDNSFELEFNLAEKQKWELLESVRKSSEMADIHYIRQKEPRGLGHAIWCARKFIGN 122 IEDHFD+SFELE NL K K+E LE V++SS++ +IHYIRQKEP+GLGHA+WCARKFIGN Sbjct: 64 IEDHFDHSFELEQNLLSKGKYETLEKVQESSKI-NIHYIRQKEPKGLGHAVWCARKFIGN 122 Query: 123 EPFAVLLGDDIVQADKPCLRQMIEVYEQYKSSIVGVQPVPWEDVSRYGLVDGTELAERVY 182 EPFAVLLGDDIVQAD PCLRQ++ YE +SS++GVQ VP + RYG++D E +R Y Sbjct: 123 EPFAVLLGDDIVQADTPCLRQLMNQYENTQSSVIGVQTVPENETHRYGIIDPIEQKDRSY 182 Query: 183 KANRLVEKPKREEAPSNLAILGRYILTPRIFDMLEEQQVGVGGEIQLTDAISRLSEVERI 242 + ++ VEKP + APSNLAI+GRY+LTP IF LE+QQ G GGEIQLTDAI RL+E++R+ Sbjct: 183 QVSKFVEKPAKGTAPSNLAIMGRYVLTPEIFMFLEDQQTGAGGEIQLTDAIQRLNEIQRV 242 Query: 243 IAYDFEGKRHDVGEKMGFIQTTIHYALQHEELKEGLLDYLKEVINS 288 AYDFEGKR+DVGEK+GFIQTTI ALQHEELK+ LLDY+K+++ S Sbjct: 243 FAYDFEGKRYDVGEKLGFIQTTIEMALQHEELKKELLDYMKKLVES 288 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,708,720,838 Number of extensions: 71867816 Number of successful extensions: 203646 Number of sequences better than 1.0e-05: 3882 Number of HSP's gapped: 197984 Number of HSP's successfully gapped: 3883 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)