BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0023.p (187 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4J8Y6.1 A4J8Y6_DESRM dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.... 311 1e-83 C3EBA9.1 C3EBA9_BACTU DTDP-4-dehydrorhamnose 3,5-epimerase 294 2e-78 B9KB12.1 B9KB12_THENN Putative dTDP-6-deoxy-D-glucose-3,5-epimerase 248 1e-64 C1TGD5.1 C1TGD5_9FIRM dTDP-4-dehydrorhamnose reductase/dTDP-4-de... 248 2e-64 C4V5F5.1 C4V5F5_9FIRM dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.... 247 4e-64 >A4J8Y6.1 A4J8Y6_DESRM dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 Length = 186 Score = 311 bits (798), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 140/184 (76%), Positives = 165/184 (89%) Query: 4 MKFTKTNLEGVLVVEPALFGDHRGWFMETYSEAKFQEQNLAYQFVQDNQSYSAVKGTLRG 63 MKFT TNL+GV++VEPA+FGDHRGWFMETY+E+KF E L Y+FVQDNQS+SAVKGTLRG Sbjct: 1 MKFTDTNLDGVIIVEPAVFGDHRGWFMETYNESKFLEAGLTYKFVQDNQSFSAVKGTLRG 60 Query: 64 LHFQLNPKAQTKLARCTRGSIYDVAVDIRQGSPSYGKWFGIELTAENKKQLLIPKGFAHG 123 +H+QLNPKAQ KL RC RG+I+D+AVDIR+GSP++GKW GI+LTAENKKQLLIP+GFAHG Sbjct: 61 IHYQLNPKAQAKLVRCIRGAIFDIAVDIRKGSPNFGKWIGIKLTAENKKQLLIPRGFAHG 120 Query: 124 FMTLTEEVEVQYKCDELYAPECDGSILWNDPDIGIEWPIDVTPVLSAKDENAPLLKDVSL 183 FMTLTE+VEVQYK DELYAPE D SILW+DP IGI+WP+D+TP+LS KDE APLL+D Sbjct: 121 FMTLTEDVEVQYKVDELYAPELDRSILWSDPVIGIKWPMDITPLLSTKDEKAPLLEDAEN 180 Query: 184 NFVY 187 NF Y Sbjct: 181 NFSY 184 >C3EBA9.1 C3EBA9_BACTU DTDP-4-dehydrorhamnose 3,5-epimerase Length = 186 Score = 294 bits (753), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 133/184 (72%), Positives = 157/184 (85%) Query: 4 MKFTKTNLEGVLVVEPALFGDHRGWFMETYSEAKFQEQNLAYQFVQDNQSYSAVKGTLRG 63 MK TNL GV V+EP +FGDHRGWFMET+S+ +E + +FVQDNQS+SA KGTLRG Sbjct: 1 MKIVDTNLLGVKVIEPKVFGDHRGWFMETFSDQAMREAGIDLKFVQDNQSFSATKGTLRG 60 Query: 64 LHFQLNPKAQTKLARCTRGSIYDVAVDIRQGSPSYGKWFGIELTAENKKQLLIPKGFAHG 123 LH+QLNPKAQTKL RCTRGSI+DVAVDIR+GSP+YG+WFGIEL+AENKKQLLIPKGFAHG Sbjct: 61 LHYQLNPKAQTKLVRCTRGSIFDVAVDIRKGSPTYGQWFGIELSAENKKQLLIPKGFAHG 120 Query: 124 FMTLTEEVEVQYKCDELYAPECDGSILWNDPDIGIEWPIDVTPVLSAKDENAPLLKDVSL 183 FMTLT++VEVQYK DELYAPE D I+WND ++G+EWP+++ PVLS KDE AP LK+ Sbjct: 121 FMTLTDDVEVQYKVDELYAPEYDRGIIWNDAEVGVEWPMEIQPVLSEKDEKAPSLKEAEN 180 Query: 184 NFVY 187 NFVY Sbjct: 181 NFVY 184 >B9KB12.1 B9KB12_THENN Putative dTDP-6-deoxy-D-glucose-3,5-epimerase Length = 188 Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 116/184 (63%), Positives = 139/184 (75%), Gaps = 1/184 (0%) Query: 4 MKFTKTNLEGVLVVEPALFGDHRGWFMETYSEAKFQEQNLAYQFVQDNQSYSAVKGTLRG 63 MK +T+L GVL++EP +F D RGWFME+YS F+E + FVQDN SYS KGTLRG Sbjct: 1 MKVMETDLPGVLIIEPRVFEDERGWFMESYSYRVFKELGIDAVFVQDNHSYSKRKGTLRG 60 Query: 64 LHFQLNPKAQTKLARCTRGSIYDVAVDIRQGSPSYGKWFGIELTAENKKQLLIPKGFAHG 123 +HFQ NP AQ KL RCTRG I DVAVD+R+GSP+Y KW +EL+ ENK+ L IPKGF H Sbjct: 61 IHFQNNPVAQAKLVRCTRGKILDVAVDLRKGSPTYKKWIMVELSEENKRMLFIPKGFGHA 120 Query: 124 FMTLTEEVEVQYKCDELYAPECDGSILWNDPDIGIEWPIDVTPVLSAKDENAPLLKDVSL 183 F+TLT++VEVQYK D+ Y+ E D SI WNDPDIGI+WPI+ P+LS KD NAP LKD Sbjct: 121 FLTLTDDVEVQYKVDQYYSKEHDRSIRWNDPDIGIDWPIE-EPILSEKDRNAPFLKDSDC 179 Query: 184 NFVY 187 NFVY Sbjct: 180 NFVY 183 >C1TGD5.1 C1TGD5_9FIRM dTDP-4-dehydrorhamnose reductase/dTDP-4-dehydrorhamnose 3,5-epimerase Length = 474 Score = 248 bits (633), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 115/185 (62%), Positives = 143/185 (77%), Gaps = 1/185 (0%) Query: 1 VNKMKFTKTNLEGVLVVEPALFGDHRGWFMETYSEAKFQEQNLAYQFVQDNQSYSAVKGT 60 V M TKTN +G+ V+E + GD+RGWF ETY+++KF Q + FVQDNQSYSA KGT Sbjct: 11 VVNMNVTKTNFKGLFVIETNVHGDNRGWFTETYTKSKFAAQGIDTDFVQDNQSYSAQKGT 70 Query: 61 LRGLHFQLNPKAQTKLARCTRGSIYDVAVDIRQGSPSYGKWFGIELTAENKKQLLIPKGF 120 LRG+HFQ NP AQTK+ RCTRG+I D VD+R+GS +Y +W+ IEL+AENKKQ+ IPKGF Sbjct: 71 LRGIHFQTNPMAQTKMIRCTRGAIIDTVVDLRKGSDTYKQWYSIELSAENKKQMYIPKGF 130 Query: 121 AHGFMTLTEEVEVQYKCDELYAPECDGSILWNDPDIGIEWPIDVTPVLSAKDENAPLLKD 180 H F+T+TE+VEVQYK DE Y+ ECD SI +NDP+IGI+W I+ PVLS KD NAPLLKD Sbjct: 131 GHAFLTITEDVEVQYKVDEYYSKECDRSIKFNDPEIGIDWGIE-NPVLSQKDLNAPLLKD 189 Query: 181 VSLNF 185 +F Sbjct: 190 SDADF 194 >C4V5F5.1 C4V5F5_9FIRM dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 Length = 186 Score = 247 bits (630), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 115/185 (62%), Positives = 144/185 (77%), Gaps = 2/185 (1%) Query: 4 MKFTKTNLEGVLVVEPALFGDHRGWFMETYSEAKFQEQNLAYQFVQDNQSYSAVKGTLRG 63 M +T L GV+++EP +FGD RGWFME++SE K ++ + FVQDN S+SA KGTLRG Sbjct: 1 MNVIETALPGVMIIEPQVFGDARGWFMESWSEKKMEDAGIHAAFVQDNHSFSAQKGTLRG 60 Query: 64 LHFQLNPKAQTKLARCTRGSIYDVAVDIRQGSPSYGKWFGIELTAENKKQLLIPKGFAHG 123 LH+QLNP AQ KL R +RG+I+DVAVDIR+ SP+Y +W G EL+AEN +QL IP+GFAHG Sbjct: 61 LHYQLNPMAQAKLLRASRGAIFDVAVDIRRNSPTYAQWVGAELSAENYRQLFIPRGFAHG 120 Query: 124 FMTLTEEVEVQYKCDELYAPECDGSILWNDPDIGIEWPIDVTPVLSAKDENAPLLKDVS- 182 F+TLT++VEVQYK D LYA +CDG+I W+DP IGI WP+ T VLS KD APLL + S Sbjct: 121 FITLTDDVEVQYKADNLYASDCDGNIRWDDPTIGIAWPLAPT-VLSEKDAAAPLLAERSE 179 Query: 183 LNFVY 187 LNFVY Sbjct: 180 LNFVY 184 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,116,537,463 Number of extensions: 44144517 Number of successful extensions: 88703 Number of sequences better than 1.0e-05: 1387 Number of HSP's gapped: 86905 Number of HSP's successfully gapped: 1387 Length of query: 187 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 59 Effective length of database: 1,854,806,283 Effective search space: 109433570697 Effective search space used: 109433570697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)