BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0022.p (625 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7B1.1 B3K7B1_9BACI Copper amine oxidase domain protein 526 e-147 B1DE69.1 B1DE69_9BACL Copper amine oxidase domain protein 241 1e-61 C0ZKX5.1 C0ZKX5_BREBN Putative uncharacterized protein 218 1e-54 B8I2S6.1 B8I2S6_CLOCE Copper amine oxidase domain protein 105 1e-20 B8I3E2.1 B8I3E2_CLOCE Copper amine oxidase domain protein 86 2e-14 >B3K7B1.1 B3K7B1_9BACI Copper amine oxidase domain protein Length = 643 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 266/598 (44%), Positives = 386/598 (64%), Gaps = 5/598 (0%) Query: 26 LSLKAGSTAATVNGEKAVIQKPIEENGVVLVPLGVFKKAFGSTVSLEGDDVVKVMYGPHT 85 L+++ GS+ A+VNG I KP ++GV++VPLGVFKKAFGS + LEG++ ++++ GPHT Sbjct: 47 LTVQNGSSTASVNGTSYTIAKPQLKHGVLMVPLGVFKKAFGSEIRLEGENRIRLLQGPHT 106 Query: 86 GAMTIGSTTAWKDGVKVTLPVPPRIVDGTLLVPLRFVAGVLGARISPVSGGGLLVTLTSS 145 + + + TAW DG KV LPV P +V GTL+VPLR VA +GA++S S G L ++L + Sbjct: 107 VVLVMDNKTAWIDGKKVQLPVEPTMVSGTLMVPLRPVAAGIGAKVSS-SQGKLAISLMVT 165 Query: 146 ASEEDAPETGGIDSDVGKTRIGNSYYRWSLNYPPGLVVGDSGGNESVATFTSTENKYYLE 205 EE E G I++ GKTRIGNSYY WSLNYP ++VG +ES + F +YYLE Sbjct: 166 DKEEKQDE-GEINNTTGKTRIGNSYYEWSLNYPSWMMVGRGTDDESGSAFNDATGRYYLE 224 Query: 206 VHASPLEKAADPEELLDRLVREAQEGGETVLDRGAFPDAAVPYARIVSKDTSGALWEGRQ 265 VHAS + P++LL+RL++E + G+ VL + AAVPYAR+VS+D G LWEGRQ Sbjct: 225 VHASSHKVKLSPDDLLERLLKEVGDSGDVVLHQETVTSAAVPYARVVSRDVDGVLWEGRQ 284 Query: 266 YYNGGRLFEIYLTDDTAANYKDLNKYASLLNSFQPSFNAEDKSIRDLSTVKNGLREGYND 325 YY R++E+Y D A +YKD++++ASLL SF+ ++ A DKS++D+S++ +G RE N+ Sbjct: 285 YYANDRVYELYFADAEAVHYKDMDQHASLLGSFRTAYRAGDKSVKDVSSIVDGFREAGNE 344 Query: 326 DYGLSLQVPADWSMDDQHLNYESTKGSYLRVKVTSAPSGS--TLESWSKDLDSQIKDTYV 383 +YG+ +PA W ++++ + Y S YL V VTSAP G+ L +W + L + +++V Sbjct: 345 EYGIWFSIPAGWEINNKDMLYGSEGEGYLSVSVTSAPKGADGALAAWGQRLKDWLAESFV 404 Query: 384 AGAYAIQDAVKAEVSGEPALVKETRLNPGSGWSTKYQILLQKSGYRYYVEYLAAAGQDED 443 +Y E+SG ++E R N G+ W T+Y++++QK+GYRYY+EY GQ+ Sbjct: 405 EESYEYIGLTPVEISGVKGQIQEVRYNFGNKWITEYEVMVQKNGYRYYLEYAIPDGQERT 464 Query: 444 KARFKTILSSIDIDFDRIKENFGRLETEDYPALRSQAVTKSSKTYGYSIDIPRLWIPYQD 503 + +K +L SI+ID+D + NFGR+ E Y ++Q +KSS+TY Y IDIPR W P D Sbjct: 465 ASNWKKVLESIEIDYDVVPANFGRIGEEGYLTDKTQMRSKSSETYRYHIDIPRYWEPLND 524 Query: 504 VFETQTVEYRFTGGRFLINVSPEGSVDYAVGLLQSYYKNSKNDPKGPQLIKVEETTFAGV 563 FE VEY F GG F I + + + + L+ YY N + +L+ V++ TFAGV Sbjct: 525 QFEQGIVEYGFAGGGFEITAQKDTAAEVIISNLKRYY-NEASAASTVKLLGVDKITFAGV 583 Query: 564 PATLLTVRQTKGGIPEQTQQVVFGNNDLVYTLTVTLNDANATSVQQADLDKTLKSFRL 621 PA V Q K G+ T+++VF + D+ YT+ TLNDANAT VQQA L +TL SF L Sbjct: 584 PAVSFKVHQVKNGVGYTTEEIVFESGDIAYTIMTTLNDANATEVQQAALARTLSSFEL 641 >B1DE69.1 B1DE69_9BACL Copper amine oxidase domain protein Length = 634 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 182/625 (29%), Positives = 305/625 (48%), Gaps = 52/625 (8%) Query: 24 LQLSLKAGSTAATVNGEKAVIQKPIEENGVVLVPLGVFKKAFGSTVSLEGDDVVKVMYGP 83 +++ LK S+ T+NG+++ + P E+ G +VPL + KAFG+ + L+ + ++ + Y Sbjct: 34 VEIRLKTNSSTVTINGKQSSVVAPFEKAGTTMVPLSIITKAFGAKLKLQDNKIITLTYNN 93 Query: 84 HTGAMTIGSTTAWKDGVKVTLPVPPRIVDGTLLVPLRFVAGVLGARISPVSGGGLLV--- 140 T +TIGS T +G T+ V P ++ GT +VP+R + GA+I +V Sbjct: 94 KTVVVTIGSKTVKVNGKDQTVAVAPVVIKGTTMVPVRVIVEAFGAKIGKDKKTNEIVITG 153 Query: 141 TLTSSASEEDAPETGGIDSDVGKTRIGNSYYRWSLNYPPGLVVGDSGGNESVATFTSTEN 200 TL S + + +D D GKT+ G+SYY W++NYPPGLV+ + + A + ST + Sbjct: 154 TLAQSGNSNSGGGSTNLDPDYGKTKFGDSYYGWTMNYPPGLVLIQQSDDGTYAEWGSTTS 213 Query: 201 KYYLEVHASPLEKAADPEELLDRLVREAQEGGETVLDRGAFPDAAVPYARIVSKDT-SGA 259 K + V E+ D++ + E V+D+ + + ++V++ + G Sbjct: 214 KSSVIVSTEHSSDVLTTNEIRDKITVDWMYSDEVVVDKRSITVNGQSFEKMVTRSSKQGM 273 Query: 260 LWEGRQYYNGGRLFEIYL----TDDTAANYKDLNKYASLLNSFQPSFNAEDKSIRDLSTV 315 L+E R G L+ + + T+ TA L+ Y SLL+SF PSFN D +I+D++ V Sbjct: 274 LFEYRAIQKGETLYFVMVGVVGTEKTA-----LDPYQSLLDSFTPSFNKADNAIKDITKV 328 Query: 316 KNGLREGYNDDYGLSLQVPADW-SMDDQHLNYESTKGSYLRVKVTSAPSGSTLESWSKDL 374 K+GL N ++GLSL++PA W + D ++ Y ++S +G T++ W + Sbjct: 329 KDGLMSINNKEFGLSLKLPAGWYGVKDSSTPLYVSEDGYFSFAISSLQTGDTVDQWLSRM 388 Query: 375 DSQIKDTYVAGAYAIQDAVKAEV--SGEPALVKETRLNPGSGWSTKYQILLQKSGYRYYV 432 Q+ + ++ Y + V + G ++ W T ++ L YRY V Sbjct: 389 QQQLHNDFLPN-YIKNEKVSSITMKDGNAQVLTYDYSYDLKTWVTVNEVYLVAGNYRYSV 447 Query: 433 EY-----LAAAGQDEDKARFKTILSSIDIDFDRIKENFGRLETEDYPALRSQAVTKSSKT 487 + L A G A FK+ ++++DID +++N+G++E E R+Q VTK+S Sbjct: 448 HFTYDTNLGAKGD----ALFKSTMATVDIDTAYVEKNYGQIEDEYDNIDRTQVVTKTSSK 503 Query: 488 YGYSIDIPRLWIPYQDVFETQTVEYRFTGGRFLINV---SPEGSVDYAV--GLLQS--YY 540 YGYSID+P W+ F +TV Y G I + G + AV GL Q Sbjct: 504 YGYSIDLPSYWLGVDTDFNQETVTYLGDYGSMNIQAYEDTDAGVANRAVQQGLQQQGITV 563 Query: 541 KNSKNDPKGPQLI---KVEETTFAGVPAT-LLTVRQTKGGIPEQTQQVVFGNNDLVYTLT 596 NS + G + V E T +G+P T +L Q+KG N L++ Sbjct: 564 SNSSSIYVGNLSVGKFTVHEVTESGLPITEVLYFVQSKG-------------NTLLFVFA 610 Query: 597 VTLNDANATSVQQADLDKTLKSFRL 621 + ND+NAT+ DK ++S + Sbjct: 611 I--NDSNATTSALNGFDKIVQSIKF 633 >C0ZKX5.1 C0ZKX5_BREBN Putative uncharacterized protein Length = 635 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 159/614 (25%), Positives = 300/614 (48%), Gaps = 24/614 (3%) Query: 20 EQKLLQLSLKAGSTAATVNGEKAVIQKPIEENGVVLVPLGVFKKAFGSTVSLEGD-DVVK 78 EQ ++ + LK +++A VNG +++P G +VPL + AFG T+ + + +++ Sbjct: 32 EQNVV-VKLKVNTSSAKVNGVDTPVEEPYFSQGTTMVPLSLLTSAFGVTLQYDNETQLIE 90 Query: 79 VMYGPHTGAMTIGSTTAWKDGVKVTLPVPPRIVDGTLLVPLRFVAGVLGARISPVSGGGL 138 ++Y + + G W +G VTL P +G +VPL + LG I+ + Sbjct: 91 LIYKTKSVKLKAGRKEVWINGKAVTLTASPETKNGKTMVPLTLITQGLGLTIT-IDAKTN 149 Query: 139 LVTLTSSASEEDAPETGGIDSDVGKTRIGNSYYRWSLNYPPGLVVGDSGGNESVATFT-S 197 V++ + E+ + +DSDVGKT IG+SYYRWS+ YP G++ + + F + Sbjct: 150 DVSILGTKQEDTPQKDSSLDSDVGKTMIGDSYYRWSMKYPTGMIQENQSFQGNYVLFKDA 209 Query: 198 TENKYYLEVHASPLEKAADPEELLDR--LVREAQEGGETVLDRGAFPDAAVPYARIVSKD 255 E Y L+++ + PE L L R ++L + + PYAR+ +K Sbjct: 210 KEASYLLDIYIA----TNQPENLSGNGLLARLTDMTENSILSKEYIANDKQPYARLTTKS 265 Query: 256 TSGALWEGRQYYNGGRLFEIYLTDDTAANYKDLNKYA---SLLNSFQPSFNAEDKSIRDL 312 + G++ E R Y G ++ + L+ A++++ KY SLL+SF +F ++KS++DL Sbjct: 266 SDGSMNEERAYQKGSNIYYVTLSSMKEADFRNPVKYGTYKSLLDSFTLNFPTDEKSVKDL 325 Query: 313 STVKNGLREGYNDDYGLSLQVPADWSMD-DQHLNYESTKG-SYLRVKVTSAPSGSTLESW 370 STV+ R NDD+ L ++VPA+W+ D + +ES +G ++++K+TS TL++W Sbjct: 326 STVEGNYRWYTNDDFALKVKVPAEWTPDYSNDMYFESDEGREWMQIKITSKEKDLTLDAW 385 Query: 371 SKDLDSQIKDTYVAGAYAIQDAV-KAEVSGEPALVKETRLNPGSGWSTKYQILLQKSGYR 429 KD + + ++ + V + ++GE A +E G W T+ + K Y+ Sbjct: 386 VKDHEKRNREEVNENYIKVNPEVGSSTIAGEAAKEQENSYLDGKTWFTQQNLFFVKGNYK 445 Query: 430 YYVE--YLAAAGQDEDKARFKTILSSIDIDFDRIKENFGRLETEDYPALRSQAVTKSSKT 487 Y++ Y+ +E +TI S+ ID ++ + G + +D +++ V K Sbjct: 446 YWISIVYMKDQPSEEVADLMRTIKQSLSIDTAKMNPSLGEIMDDDRID-KNKTVIIKDKD 504 Query: 488 YGYSIDIPRLWIPYQDVFETQTVEYRFTGGRFLINVSPEGSVDYAVGLLQSYYKNSKNDP 547 +S+++P W +++ ++ Y+F GG F V +G+++ + +N+K Sbjct: 505 ATFSLELPEYWQETRELDGGRS--YQFNGGDFNFQVG-QGNLNEVKDIFIKAIENNKT-- 559 Query: 548 KGPQLIKVEETTFAGVPATLLTVRQTKGGIPEQTQQVVFGNNDLVYTLTVTLNDANATSV 607 + +ETT AG PA L ++ T G + + +T+ +L++ T Sbjct: 560 LKYTFKENKETTLAGNPAHKLLIQGTDGATRFEKTLYFVQKGNKTFTMYWSLSEFARTKT 619 Query: 608 QQADLDKTLKSFRL 621 + + K + S + Sbjct: 620 MEERIQKVVDSLKF 633 >B8I2S6.1 B8I2S6_CLOCE Copper amine oxidase domain protein Length = 634 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 101/356 (28%), Positives = 161/356 (45%), Gaps = 18/356 (5%) Query: 23 LLQLSLKAGSTAATVNGEKAVIQKPIEENGVVLVPLGVFKKAFGSTVS--LEGDDVVKVM 80 ++ +S KAG+T+ TVNG+ + G VP+ V A G++ + L+ V + Sbjct: 35 IITVSFKAGTTSYTVNGKAVKAEASAVVQGKTFVPVKVITDALGASFTPDLKKKTAV-IK 93 Query: 81 YGPHTGAMTIGSTTAWKDGVKVTLPVPPRIVDGTLLVPLRFVAGVLGARISPVSGGGLLV 140 Y +T A G K + P I + + + + F+A V GA + SGG V Sbjct: 94 YNDVEIKITDKKKEAVIAGKKTKMDAAPYIKNSSFMASVTFLADVFGADLKN-SGGK--V 150 Query: 141 TLTSS-ASEEDAPETGGIDSDVGKTRIGNSYYRWSLNYPPGLVVGDSGGNESVATFTSTE 199 T T A+ + G I + KT++G+SYY+WS+ P L + N F S + Sbjct: 151 TFTKEIANPNSIKDFGTIIKNTNKTKVGDSYYKWSMKLPRELTLSSRTFNGDNNFFISQD 210 Query: 200 NKYYLEVHASPLEKAADPEELLDRLVREAQEGGETVLDRGAFPDAAVPYARIVSKDTSGA 259 Y + + +K A E+ L EA++ T++D G + + YA IV K S Sbjct: 211 ESYGIMIAIKDKDKDATLEDEQQNLREEAEDS--TLIDYGIYESNGIEYAEIVYKG-SDV 267 Query: 260 LWEGRQYYNGGRLFEIYLTDDTAANYKDLNKYASLLNSFQPSFNAEDKSIRDLSTVK-NG 318 + R Y + F + L + +Y D NKY L++SFQ F ++D S DLS V G Sbjct: 268 TFVKRVYMTDTKEFVLLLLLENDKSYLD-NKYQDLIDSFQFKF-SKDGSTEDLSDVSATG 325 Query: 319 LREGYNDDYGLSLQVPADWSM---DDQH--LNYESTKGSYLRVKVTSAPSGSTLES 369 R+ + S ++ W D+ H + ++ G VK+ S G TL+S Sbjct: 326 YRKYQDTQLKWSAKILPYWREYKDDNIHNEVQFDGLFGEIFSVKIYSLEKGETLDS 381 >B8I3E2.1 B8I3E2_CLOCE Copper amine oxidase domain protein Length = 647 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 124/517 (23%), Positives = 207/517 (40%), Gaps = 56/517 (10%) Query: 18 AAEQKLLQLSLKAGSTAATVNGEKA-VIQKPIEENGVVLVPLGVFKKAFGSTVSLEGDDV 76 AA+ + L+AG + VNG + V + P +G +VPL F + G ++ Sbjct: 25 AADDDKTVIELRAGISQVCVNGNYSNVTEPPYISDGTFMVPLEWFSETIGGEIAKISVGS 84 Query: 77 VKVMYGPHTGAMTIGSTTAWKDGVKVTLPVPPRIVDGTLLVPLRFVAGVLGARIS-PVSG 135 +V+YG + +TIG T K+ + T+PV P + +VP+ F++ + I+ + Sbjct: 85 ERVIYGSNMAEITIGQTDYTKNYEEKTMPVAPTQKNNITMVPVDFISSIFPVNITNDIDR 144 Query: 136 GGLLVTLTSSASEED-APETGGIDSDVGKTRIGNSYYRWSLNYPPGLVVGDSGGNESVAT 194 G L + L + D + TGGI + +IGNSY+ WSL+ P G V + + Sbjct: 145 GTLKIVLEDDGALNDLSFLTGGIST----PKIGNSYFGWSLSIPSGSRVISNSFKSDLIQ 200 Query: 195 FTSTENKYYLEVHASPLEKAADPEELLDRLVREAQEGGETVLDRGAFPDAAVPYARIVSK 254 T+ YLE+ K + E+ L+ A VPY + Sbjct: 201 ITNEGRGLYLEIKVET--KKGRTLSQYSNTFKLENSTEESNLNL----KAKVPYFESLGI 254 Query: 255 DTSGALWEGRQYYNGGRLFEIYL-TDDTAANYKDL---NKYASLLNSFQPSFNAEDKSIR 310 R Y G + + + D + + K L Y+ +++SF + K I+ Sbjct: 255 SEYDEPTRTRIYDKGQYFYSLTIGCYDGSVSSKHLMSDKYYSDIISSFNLEYKGNVKGIQ 314 Query: 311 DLSTVKNGLREGYN-------DDY-GLSLQVPADWSM----DDQHLNYEST-KGSYLRVK 357 DLS V NG YN + Y + VPA+W+ DQ + Y++V Sbjct: 315 DLSKVVNGKVSYYNYISFSTRNKYLSWVMDVPANWNNLQIGSDQLTTFLGIDTKHYVQVA 374 Query: 358 VTSAPSGSTLESWSKDLDSQIKDTYVAGAYAIQDAVKAEVSGEPALVKET------RLNP 411 V S TL + +++ + AY +GE +L K T ++ Sbjct: 375 VNSLGE-KTLGQYVENIKKGYDKNFSPKAYTFVS------TGERSLAKTTAKNLKFKIKQ 427 Query: 412 GSGWSTKYQILLQKSGYRYYV-------EYLAAAGQ---DEDKARFKTILSSIDIDFDRI 461 G+ + LQK + Y + EYL + DK F + + D D I Sbjct: 428 GAKSYIIDEYYLQKGSFVYEISLKLPEKEYLKEKNEYLNTVDKISFFS--ENGDKLLDEI 485 Query: 462 KENFGRLETEDYPALRSQAVTKSSKTYGYSIDIPRLW 498 NF + +D +L + +K Y +++ IP W Sbjct: 486 -NNFNASKEDDRVSLNDKLFNYVNKAYKWNLKIPGYW 521 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.132 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,851,339,899 Number of extensions: 174668867 Number of successful extensions: 332841 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 332860 Number of HSP's successfully gapped: 18 Length of query: 625 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 483 Effective length of database: 1,722,912,073 Effective search space: 832166531259 Effective search space used: 832166531259 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 134 (56.2 bits)