BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0018.p (545 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LXT3.1 A6LXT3_CLOB8 Sulfite reductase (Ferredoxin) EC=1.8.7.1 675 0.0 A1HTK4.1 A1HTK4_9FIRM Ferredoxin--nitrite reductase EC=1.7.7.1 618 e-175 A7GMW3.1 A7GMW3_BACCN Ferredoxin--nitrite reductase EC=1.7.7.1 613 e-173 C2PCE4.1 C2PCE4_BACCE Ferredoxin--nitrite reductase 609 e-172 B7INB7.1 B7INB7_BACC2 Putative sulfite reductase EC=1.8.7.- 609 e-172 >A6LXT3.1 A6LXT3_CLOB8 Sulfite reductase (Ferredoxin) EC=1.8.7.1 Length = 529 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/535 (59%), Positives = 404/535 (75%), Gaps = 6/535 (1%) Query: 4 MAYEPLWSAAPEKLNKFEFVKLQKDGLDVIRTIIEKYALEGYSSIPADDLDLFKWAGVYQ 63 M+YE +W A ++LN E +KL+KDGLDVI TII+KY+ EGY SI D++ FKWAGVY+ Sbjct: 1 MSYEAIW-AKNQRLNDVEIIKLEKDGLDVIETIIDKYSKEGYDSITPKDMNRFKWAGVYE 59 Query: 64 QKPREGHFMMRVRINTGIMTSDQARTLAEIARRYGRNLIDVTTRQAIQFHWLTVEHLPDI 123 QKPREG+FMMRVRIN+GIMTS+QA+ LA IA+ YGR + + +TR AIQFHW+ VE LP I Sbjct: 60 QKPREGYFMMRVRINSGIMTSEQAKVLAGIAKDYGRGIANASTRGAIQFHWVQVEDLPSI 119 Query: 124 FKRLEAAGLYSFEACGDCPRTIVGNPLAGIDKDELFDTTGIVEQLNDFFMLNRDFSNLPR 183 ++RLEA GL FEACGDCPRTIVGNPLAGIDKDEL DTT +VEQ+N+FF+LN+DFSNLPR Sbjct: 120 YERLEACGLSPFEACGDCPRTIVGNPLAGIDKDELMDTTELVEQVNNFFLLNKDFSNLPR 179 Query: 184 KFKISVSANKFNNAQAEINDLAFTPAVKVIDGALTQGFHLMVGGGLSAKPHLAQKLDVFV 243 KFKIS+SA+ N A A+INDLAFTPA K ID GFH+ VGGGLSA PHLAQKLD+FV Sbjct: 180 KFKISISASIHNAAHAQINDLAFTPATKKIDNQDVIGFHVWVGGGLSASPHLAQKLDIFV 239 Query: 244 KPEEALKVAAGVVTLFRDYGYREKRHHARLKFLVADWGAEKFKAKLIEAVGELPSRGEDQ 303 KPE LKVA GV T+FRDYGYREKR ARLKFLVADWGAEKFK KL+E G++PS G+D+ Sbjct: 240 KPEYVLKVAEGVCTIFRDYGYREKRTRARLKFLVADWGAEKFKNKLLEFTGDMPSSGDDK 299 Query: 304 TVGWQAAFFDGVHPQIQEGLSYVGLNVPAGRLSSDELEQLAGLADQYGEGKLRTTMTQNI 363 W A+++ GVH Q ++G SY+G+++P G ++ D+L +LA ++++YG+ K+RTT++QN+ Sbjct: 300 LASWNASYYFGVHSQNEDGKSYIGVSLPLGEITCDQLLELAHISEKYGDRKIRTTLSQNL 359 Query: 364 IISGVPDDKLEALLDAPVLQRLSPTAKNFISRTVACTGNEFCNLALVETKQRAVSVAAYL 423 II+G+ D+ + +LL V ++LSP F T++CTG EFCNLA+VETK+RA V YL Sbjct: 360 IITGISDEDIPSLLKKDVFKQLSPNPSIFTGYTISCTGKEFCNLAIVETKKRAKEVIEYL 419 Query: 424 DEHIHLDEKLRIHFVGCPNACGQKQVADIGLQGTLIKTPEGMTDAFDIAVGGTLGCGDRG 483 D I LD LRIHF GCPN+CGQK +ADI LQG LIKT + +AF I +GGTL G Sbjct: 420 DSKIKLDTPLRIHFTGCPNSCGQKHIADISLQGALIKTEDSCEEAFTIWLGGTLNNG--- 476 Query: 484 PAAEFARPLKGRVKGDRVGPVLEQLISFYTEQRQEQENFYAFTNRVGVPAFQEQL 538 +FA L RVK V VLE++I+F+ + + E E F F RVG+ E + Sbjct: 477 --GQFAENLNYRVKSTEVHIVLEKIITFFEKSKLENETFNEFIARVGISKITENI 529 >A1HTK4.1 A1HTK4_9FIRM Ferredoxin--nitrite reductase EC=1.7.7.1 Length = 548 Score = 618 bits (1594), Expect = e-175, Method: Compositional matrix adjust. Identities = 303/534 (56%), Positives = 390/534 (73%), Gaps = 7/534 (1%) Query: 10 WSAAPEKLNKFEFVKLQKDGLDVIRTIIEKYALEGYSSIPADDLDLFKWAGVYQQKPR-E 68 W+ KLNK E +KLQKDGL ++ I E++A G++ I A+D++L KWAGVY QKPR + Sbjct: 5 WTKDLSKLNKMELIKLQKDGLTILDDI-ERFATAGFAGIRAEDIELLKWAGVYVQKPRTD 63 Query: 69 GHFMMRVRINTGIMTSDQARTLAEIARRYGRNLIDVTTRQAIQFHWLTVEHLPDIFKRLE 128 G+FMMRV+I GIM + QARTLA IAR YGR+ + +TTRQA+QFHW+ VE+LPDIF RL Sbjct: 64 GYFMMRVKIPGGIMNAGQARTLAAIARDYGRSELQLTTRQAVQFHWIRVENLPDIFTRLT 123 Query: 129 AAGLYSFEACGDCPRTIVGNPLAGIDKDELFDTTGIVEQLNDFFMLNRDFSNLPRKFKIS 188 AAGL S EACGDCPRT+VGNPLAGID DE+ D +VE++ FF N +FSNLPRKFKIS Sbjct: 124 AAGLSSVEACGDCPRTVVGNPLAGIDPDEVIDARPLVEKVTRFFQGNPEFSNLPRKFKIS 183 Query: 189 VSANKFNNAQAEINDLAFTPAVKVIDGALTQGFHLMVGGGLSAKPHLAQKLDVFVKPEEA 248 +S + N AEIND+AFTPAVK IDG GFH+MVGGGL+AKPH+A KLD+FV+PEE Sbjct: 184 ISGSVDNPGHAEINDVAFTPAVKEIDGEQLIGFHVMVGGGLAAKPHMAVKLDIFVRPEEV 243 Query: 249 LKVAAGVVTLFRDYGYREKRHHARLKFLVADWGAEKFKAKLIEAVGELPSRGEDQTVGWQ 308 +KVAA V T+FRD+GYRE+R HARLKFLVADWG +F+++L++ G LP+RG+D T GW Sbjct: 244 VKVAAAVATIFRDFGYREQRFHARLKFLVADWGEARFRSELLKLTGPLPTRGKDLTRGWN 303 Query: 309 AAFFDGVHPQIQEGLSYVGLNVPAGRLSSDELEQLAGLADQYGEGKLRTTMTQNIIISGV 368 ++ GVHPQ Q GL YVGL VP G L++ ++E+LA LA +YG+G LRTT TQN+I++ + Sbjct: 304 GGYYYGVHPQKQTGLHYVGLAVPGGLLTAADMEELAELAVRYGDGSLRTTNTQNVILANI 363 Query: 369 PDDKLEALLDAPVLQRLSPTAKNFISRTVACTGNEFCNLALVETKQRAVSVAAYLDEHIH 428 D+K+ ALLD +L+R +P ++F V CTGN FCNLA VETK+R S+ YLD+H+ Sbjct: 364 ADNKVAALLDEDLLKRFTPFPQSFAGYAVTCTGNTFCNLATVETKRRLTSIVEYLDKHVK 423 Query: 429 LDEKLRIHFVGCPNACGQKQVADIGLQGTLIKTPEGMTDAFDIAVGGTLGCGDRGPAAEF 488 LD +R+H GCPNACG Q+ADIGLQGTL+ +AF++ +GG L GP A F Sbjct: 424 LDTPVRLHLSGCPNACGHHQIADIGLQGTLLNIDGKAIEAFELWLGGAL-----GPGAAF 478 Query: 489 ARPLKGRVKGDRVGPVLEQLISFYTEQRQEQENFYAFTNRVGVPAFQEQLTAIL 542 A L+GR+ +EQL++F+ + E E F AF RVGV AFQ +L L Sbjct: 479 ATKLEGRIPAGEAAKAIEQLLNFFQVNKGEGETFAAFVRRVGVSAFQTKLDEFL 532 >A7GMW3.1 A7GMW3_BACCN Ferredoxin--nitrite reductase EC=1.7.7.1 Length = 540 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 296/542 (54%), Positives = 390/542 (71%), Gaps = 9/542 (1%) Query: 4 MAYEPLWSAAPEKLNKFEFVKLQKDGLDVIRTIIEKYALEGYSSIPADDLDLFKWAGVYQ 63 M+YE +W A+ EKLN+ E KL+KDGL++ + I YA G++SIP ++ D FKWAG+Y Sbjct: 1 MSYEKVW-ASNEKLNRTEKKKLEKDGLEIFKEI-PYYAENGFASIPKEEWDSFKWAGLYL 58 Query: 64 QKPRE-GHFMMRVRINTGIMTSDQARTLAEIARRYGRNLIDVTTRQAIQFHWLTVEHLPD 122 Q+P+E G+FMMRV I +GI+T++Q LA IA YGR+++D+TTRQAIQFHWL +E +PD Sbjct: 59 QRPKEAGYFMMRVNIPSGILTNEQVEVLASIAEDYGRDVLDITTRQAIQFHWLQIEQIPD 118 Query: 123 IFKRLEAAGLYSFEACGDCPRTIVGNPLAGIDKDELFDTTGIVEQLNDFFMLNRDFSNLP 182 IFKRLE+ GL + ACGD R I+GNPLAGID+DELFDT IV+ + +FF N DFSNLP Sbjct: 119 IFKRLESVGLSTAGACGDITRNIIGNPLAGIDRDELFDTAPIVKDIYEFFQHNEDFSNLP 178 Query: 183 RKFKISVSANKFNNAQAEINDLAFTPAVKVIDGALTQGFHLMVGGGLSAKPHLAQKLDVF 242 RKFKIS+SAN +N A AEIN AF PA K IDG + +GFH+ VGGGLSA+P+LAQ+LD+F Sbjct: 179 RKFKISISANVYNAANAEINCAAFVPARKEIDGNIVEGFHVRVGGGLSARPYLAQELDLF 238 Query: 243 VKPEEALKVAAGVVTLFRDYGYREKRHHARLKFLVADWGAEKFKAKLIEAVGELPSRGED 302 ++P++ VA + T+FRD+GYREKRH ARLKFLVADWG EKFK L+E G L +GE Sbjct: 239 IRPQQVKDVAIAIATIFRDFGYREKRHLARLKFLVADWGPEKFKETLLEYTGPLYEKGES 298 Query: 303 QTVGWQAAFFDGVHPQIQEGLSYVGLNVPAGRLSSDELEQLAGLADQYGEGKLRTTMTQN 362 GW A +F GVH Q QE LSYVG NVP GRL S+E ++A +A QYG G++RT +QN Sbjct: 299 ALKGWNAGYFYGVHKQKQENLSYVGFNVPVGRLHSEEFFEIARIAKQYGNGEIRTCNSQN 358 Query: 363 IIISGVPDDKLEALLDAPVLQRLSPTAKNFISRTVACTGNEFCNLALVETKQRAVSVAAY 422 II VP++ +E+LL P+ + +S + K+FI V+CTG E+CNLALVETK+R +A Y Sbjct: 359 FIIPNVPEENVESLLKEPLFESISASPKSFIGYAVSCTGIEYCNLALVETKERLRQIADY 418 Query: 423 LDEHIHLDEKLRIHFVGCPNACGQKQVADIGLQGTLIKTPE-GMTDAFDIAVGGTLGCGD 481 LD + LD +RIH VGCPN+CGQ+Q+ADIGLQG +KT E G+ +AF+I VGGTL G Sbjct: 419 LDTQLALDVPVRIHMVGCPNSCGQRQIADIGLQGVKLKTKEKGIVEAFEIYVGGTLLEG- 477 Query: 482 RGPAAEFARPLKGRVKGDRVGPVLEQLISFYTEQRQEQENFYAFTNRVGVPAFQEQLTAI 541 + + LKG++ G+ + VL ++++ E + E FY F RVG+ QE I Sbjct: 478 ----GAYNQKLKGKIDGEDLSNVLVAFLTYFKEHKLPAETFYEFVGRVGIENLQEAFNTI 533 Query: 542 LE 543 +E Sbjct: 534 IE 535 >C2PCE4.1 C2PCE4_BACCE Ferredoxin--nitrite reductase Length = 540 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 302/542 (55%), Positives = 386/542 (71%), Gaps = 9/542 (1%) Query: 4 MAYEPLWSAAPEKLNKFEFVKLQKDGLDVIRTIIEKYALEGYSSIPADDLDLFKWAGVYQ 63 M+YE +W A EKLN+ E KL+KDGL++ I YA G+ SIP ++ D FKWAG+Y Sbjct: 1 MSYEKVW-ANNEKLNQTEKNKLKKDGLEIFNDI-PYYAENGFESIPKEEWDAFKWAGLYL 58 Query: 64 QKPRE-GHFMMRVRINTGIMTSDQARTLAEIARRYGRNLIDVTTRQAIQFHWLTVEHLPD 122 Q+P+E G+FMMRV I +GI+T+ QA LA IA YGR++ID+TTRQAIQFHWL + +PD Sbjct: 59 QRPKEAGYFMMRVNIPSGIITNAQAEVLASIAEDYGRDVIDITTRQAIQFHWLEIHQIPD 118 Query: 123 IFKRLEAAGLYSFEACGDCPRTIVGNPLAGIDKDELFDTTGIVEQLNDFFMLNRDFSNLP 182 IFKRL GL S ACGD R I GNPLAGID +ELFDTTGIV+++ D+F N +FSNLP Sbjct: 119 IFKRLARVGLSSAGACGDITRNITGNPLAGIDANELFDTTGIVKEVYDYFQHNEEFSNLP 178 Query: 183 RKFKISVSANKFNNAQAEINDLAFTPAVKVIDGALTQGFHLMVGGGLSAKPHLAQKLDVF 242 RKFK+S+S+N +N+A AEIN +AFTPA K IDG GFH+ VGGGLSA+P+LA +LDVF Sbjct: 179 RKFKMSISSNIYNSANAEINCVAFTPATKEIDGEKKVGFHIKVGGGLSARPYLADELDVF 238 Query: 243 VKPEEALKVAAGVVTLFRDYGYREKRHHARLKFLVADWGAEKFKAKLIEAVGELPSRGED 302 V PEE VA + T+FRD+GYREKRH ARLKFLVADWGAEKFK KLIE +G L S+GE Sbjct: 239 VLPEEVKGVAIAIATIFRDFGYREKRHLARLKFLVADWGAEKFKEKLIEYIGPLQSKGES 298 Query: 303 QTVGWQAAFFDGVHPQIQEGLSYVGLNVPAGRLSSDELEQLAGLADQYGEGKLRTTMTQN 362 GW A +F GV Q Q+GL YVG NVP GRL ++E+ ++A +A QYG G++RT +QN Sbjct: 299 ALKGWNAGYFYGVQDQKQDGLKYVGFNVPVGRLHAEEMFEIARIAKQYGNGQIRTCNSQN 358 Query: 363 IIISGVPDDKLEALLDAPVLQRLSPTAKNFISRTVACTGNEFCNLALVETKQRAVSVAAY 422 II VP + + LL+ P+ + +S + K+FI V+CTG E+CNLALVETK+R +A Y Sbjct: 359 FIIPNVPPENVTGLLNEPLFEAISASPKSFIGHAVSCTGIEYCNLALVETKERLRKIAEY 418 Query: 423 LDEHIHLDEKLRIHFVGCPNACGQKQVADIGLQGTLIKTPE-GMTDAFDIAVGGTLGCGD 481 LD I LD +RIH VGCPN+CGQ+Q+ADIGLQG +KT E G+ +AF+I VGGTL G Sbjct: 419 LDTQIALDVPVRIHMVGCPNSCGQRQIADIGLQGVKMKTKEKGIVEAFEIYVGGTLLDG- 477 Query: 482 RGPAAEFARPLKGRVKGDRVGPVLEQLISFYTEQRQEQENFYAFTNRVGVPAFQEQLTAI 541 + + LKG++ G+ + VL IS++ E + E FY F RVG+ Q L + Sbjct: 478 ----GAYNQKLKGKIDGEDLPDVLASFISYFKENKLPAETFYDFVGRVGIETLQIVLNTV 533 Query: 542 LE 543 LE Sbjct: 534 LE 535 >B7INB7.1 B7INB7_BACC2 Putative sulfite reductase EC=1.8.7.- Length = 540 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 303/542 (55%), Positives = 385/542 (71%), Gaps = 9/542 (1%) Query: 4 MAYEPLWSAAPEKLNKFEFVKLQKDGLDVIRTIIEKYALEGYSSIPADDLDLFKWAGVYQ 63 M+YE +W A EKLN+ E KL KDGL++ I YA G+ SIP ++ D FKWAG+Y Sbjct: 1 MSYEKVW-ANNEKLNQTEKNKLAKDGLEIFNDI-PYYAENGFESIPKEEWDTFKWAGLYL 58 Query: 64 QKPRE-GHFMMRVRINTGIMTSDQARTLAEIARRYGRNLIDVTTRQAIQFHWLTVEHLPD 122 Q+P+E G+FMMRV I +GI+T+ QA LA IA YGR++ID+TTRQAIQFHWL ++ +PD Sbjct: 59 QRPKEAGYFMMRVNIPSGIITNAQAEVLASIAEDYGRDVIDITTRQAIQFHWLEIQQMPD 118 Query: 123 IFKRLEAAGLYSFEACGDCPRTIVGNPLAGIDKDELFDTTGIVEQLNDFFMLNRDFSNLP 182 IFKRL GL S ACGD R I GNPLAGID +ELFDTT IV+++ D+F N +FSNLP Sbjct: 119 IFKRLARVGLSSAGACGDITRNITGNPLAGIDANELFDTTHIVKEVYDYFQHNEEFSNLP 178 Query: 183 RKFKISVSANKFNNAQAEINDLAFTPAVKVIDGALTQGFHLMVGGGLSAKPHLAQKLDVF 242 RKFK+S+S+N +N+A AEIN +AFTPA K IDG GFH+ VGGGLSA+P+LA +LDVF Sbjct: 179 RKFKMSISSNVYNSANAEINCVAFTPATKEIDGEKKVGFHIKVGGGLSARPYLADELDVF 238 Query: 243 VKPEEALKVAAGVVTLFRDYGYREKRHHARLKFLVADWGAEKFKAKLIEAVGELPSRGED 302 V PEE VA G+ T+FRD+GYREKRH ARLKFLVADWGAEKFK KLIE G L S+GE Sbjct: 239 VLPEEVKAVAIGIATIFRDFGYREKRHLARLKFLVADWGAEKFKEKLIEYTGPLQSKGES 298 Query: 303 QTVGWQAAFFDGVHPQIQEGLSYVGLNVPAGRLSSDELEQLAGLADQYGEGKLRTTMTQN 362 GW A +F GV Q Q+GL YVG NVP GRL ++E+ ++A +A QYG G++RT +QN Sbjct: 299 ALKGWNAGYFYGVQDQKQDGLKYVGFNVPVGRLHAEEMFEIARIAKQYGNGQIRTCNSQN 358 Query: 363 IIISGVPDDKLEALLDAPVLQRLSPTAKNFISRTVACTGNEFCNLALVETKQRAVSVAAY 422 II VP + ++ LL P+ + +S + K+FI V+CTG E+CNLALVETK+R +A Y Sbjct: 359 FIIPNVPPENVKGLLSEPLFEAISASPKSFIGHAVSCTGIEYCNLALVETKERLRKIAEY 418 Query: 423 LDEHIHLDEKLRIHFVGCPNACGQKQVADIGLQGTLIKTPE-GMTDAFDIAVGGTLGCGD 481 LD I LD +RIH VGCPN+CGQ+Q+ADIGLQG +KT E G+ +AF+I VGGTL G Sbjct: 419 LDTQIALDVPVRIHMVGCPNSCGQRQIADIGLQGVKMKTKEKGIVEAFEIYVGGTLLDG- 477 Query: 482 RGPAAEFARPLKGRVKGDRVGPVLEQLISFYTEQRQEQENFYAFTNRVGVPAFQEQLTAI 541 + + LKG++ G+ + VL IS++ E + E FY F RVGV Q L + Sbjct: 478 ----GAYNQKLKGKIDGEDLPDVLASFISYFKENKLPAETFYDFVGRVGVDTLQIALNNV 533 Query: 542 LE 543 LE Sbjct: 534 LE 535 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,292,031,287 Number of extensions: 143262938 Number of successful extensions: 321659 Number of sequences better than 1.0e-05: 1557 Number of HSP's gapped: 316806 Number of HSP's successfully gapped: 2001 Length of query: 545 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 404 Effective length of database: 1,732,333,088 Effective search space: 699862567552 Effective search space used: 699862567552 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)