BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0017.p
         (66 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6CIL1.1 A6CIL1_9BACI Group-specific protein                           92   2e-17
C2UWB0.1 C2UWB0_BACCE Putative uncharacterized protein                 84   3e-15
A9VHQ2.1 A9VHQ2_BACWK Putative uncharacterized protein                 82   1e-14
C3A6T7.1 C3A6T7_BACMY Putative uncharacterized protein                 82   1e-14
C2ZQI7.1 C2ZQI7_BACCE Putative uncharacterized protein                 82   1e-14

>A6CIL1.1 A6CIL1_9BACI Group-specific protein
          Length = 78

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 55/66 (83%)

Query: 1  MLRTETEWSDGTETEEKGIVPPLKFHSLYIRVWIRQTVWIMDSREGFKRSRKTRTAFKII 60
          ++RTETE  DGTE E+KGI+PP+KF S+Y+R+W+ +TV +MD +EGFK+ +K R AFK+I
Sbjct: 13 IVRTETELEDGTEYEQKGIIPPIKFRSVYLRIWLLKTVIVMDFKEGFKKMKKNRNAFKLI 72

Query: 61 IGISSY 66
           GI+SY
Sbjct: 73 FGITSY 78


>C2UWB0.1 C2UWB0_BACCE Putative uncharacterized protein
          Length = 81

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 50/65 (76%)

Query: 1  MLRTETEWSDGTETEEKGIVPPLKFHSLYIRVWIRQTVWIMDSREGFKRSRKTRTAFKII 60
           +RTETE +DGTE EEKGIV P+ F S Y+RVW R+T +I D++EGFK+ RK+R  +K I
Sbjct: 13 FVRTETENTDGTEFEEKGIVRPIYFESFYVRVWFRKTCFIFDTKEGFKKVRKSRAEYKFI 72

Query: 61 IGISS 65
          IGI S
Sbjct: 73 IGIVS 77


>A9VHQ2.1 A9VHQ2_BACWK Putative uncharacterized protein
          Length = 81

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 50/65 (76%)

Query: 1  MLRTETEWSDGTETEEKGIVPPLKFHSLYIRVWIRQTVWIMDSREGFKRSRKTRTAFKII 60
           +RTETE  DGTE EE+GI+ P+ F SLY+R+W R+T +I D++EGFK+ RK+R  +K I
Sbjct: 13 FIRTETENKDGTEFEERGIIKPIYFESLYVRIWFRKTCFIFDTKEGFKKVRKSRAEYKFI 72

Query: 61 IGISS 65
          +G+ S
Sbjct: 73 VGMVS 77


>C3A6T7.1 C3A6T7_BACMY Putative uncharacterized protein
          Length = 81

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 50/65 (76%)

Query: 1  MLRTETEWSDGTETEEKGIVPPLKFHSLYIRVWIRQTVWIMDSREGFKRSRKTRTAFKII 60
           +RTETE  DGTE EE+GI+ P+ F SLY+R+W R+T +I D++EGFK+ RK+R  +K I
Sbjct: 13 FIRTETENKDGTEFEERGIIKPIYFESLYVRIWFRKTCFIFDTKEGFKKVRKSRAEYKFI 72

Query: 61 IGISS 65
          +G+ S
Sbjct: 73 VGMVS 77


>C2ZQI7.1 C2ZQI7_BACCE Putative uncharacterized protein
          Length = 81

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 50/65 (76%)

Query: 1  MLRTETEWSDGTETEEKGIVPPLKFHSLYIRVWIRQTVWIMDSREGFKRSRKTRTAFKII 60
           +RTETE  DGTE EE+GI+ P+ F SLY+R+W R+T +I D++EGFK+ RK+R  +K I
Sbjct: 13 FIRTETENKDGTEFEERGIIKPIYFESLYVRIWFRKTCFIFDTKEGFKKVRKSRAEYKFI 72

Query: 61 IGISS 65
          +G+ S
Sbjct: 73 VGMVS 77


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 405,874,929
Number of extensions: 11456370
Number of successful extensions: 15520
Number of sequences better than 1.0e-05: 71
Number of HSP's gapped: 15520
Number of HSP's successfully gapped: 71
Length of query: 66
Length of database: 3,060,696,203
Length adjustment: 38
Effective length of query: 28
Effective length of database: 2,702,697,633
Effective search space: 75675533724
Effective search space used: 75675533724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)