BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0016.p (957 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5D7Q4.1 C5D7Q4_9BACI Excinuclease ABC, A subunit 1434 0.0 Q5KVB6.1 Q5KVB6_GEOKA Excinuclease ABC subunit A 1412 0.0 C0Z6Q5.1 C0Z6Q5_BREBN Excinuclease ABC subunit A 1410 0.0 O34863.1 UVRA_BACSU UvrABC system protein A 1409 0.0 A7Z984.1 A7Z984_BACA2 UvrA 1407 0.0 >C5D7Q4.1 C5D7Q4_9BACI Excinuclease ABC, A subunit Length = 954 Score = 1434 bits (3713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 680/949 (71%), Positives = 800/949 (84%), Gaps = 1/949 (0%) Query: 1 LANENIVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLS 60 +A + I++KGARAHNLKNIDV IPRD+ VV AFDTIYAEGQRRYVESLS Sbjct: 1 MATDKIIVKGARAHNLKNIDVEIPRDKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLS 60 Query: 61 AYARQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHP 120 AYARQFLGQM+KPDVD+I+GLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIG P Sbjct: 61 AYARQFLGQMDKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRP 120 Query: 121 HCPDHGIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVR 180 CP+HGIEI SQT+EQMVDR++ YPE+T++QILAPV+SGRKG H DI KQG+VRVR Sbjct: 121 VCPEHGIEIKSQTIEQMVDRLLAYPERTKMQILAPVVSGRKGTHAKTLEDIRKQGYVRVR 180 Query: 181 VDGELREVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIG 240 VDGE+RE+TEDI LEKNKKH+ RL DSLETALKL+ G++L+D+IG Sbjct: 181 VDGEMRELTEDIELEKNKKHSIEVVVDRIIIKEGIAARLADSLETALKLADGKVLIDVIG 240 Query: 241 QEELLFSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPDQEKS 300 +EELLFS ACP CGFSI EL PRMFSFNSP+GACP+CDGLG K+ VDPDL+IP+ E + Sbjct: 241 EEELLFSEKHACPYCGFSIGELEPRMFSFNSPYGACPDCDGLGAKLEVDPDLVIPNDELT 300 Query: 301 IEEGAFLAWTGSTSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEKIRFRY 360 + E A W +S YYPQ L++VC H+GI +VPV L E ++K+L G+G EKI FRY Sbjct: 301 LREHAVAPWEPQSSQYYPQLLEAVCNHYGIDMDVPVKDLPKEQLDKILYGSGGEKIYFRY 360 Query: 361 ENDFGQRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEILA 420 +NDFGQ ++ + FEG+IPN+ERRYRET+SD +RE +E +M+ +PC CKG RLKKE LA Sbjct: 361 QNDFGQVREQYIVFEGVIPNVERRYRETSSDYVREQMEKYMAHQPCPTCKGNRLKKESLA 420 Query: 421 VTVNDRNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFLVNVGLNYLTL 480 V V ++I +VT LS+ + L+FF N+ LSEKE IAHLIL+EI RLGFL NVGL+YLTL Sbjct: 421 VLVGGKHIGEVTALSVTEALEFFQNLQLSEKEKKIAHLILREIRERLGFLKNVGLDYLTL 480 Query: 481 SRAAGSLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLGHMRDLGNT 540 +R+AG+LSGGEAQRIRLATQIGS L GVLY+LDEPSIGLHQRDNDRLI+TL MRD+GNT Sbjct: 481 NRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDIGNT 540 Query: 541 LIVVEHDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGEYLSGRKFIPV 600 LIVVEHDEDTM+AADY+IDIGPGAGIHGG+V+A GTP+E+M++PNSLTG+YLSG+KFIP+ Sbjct: 541 LIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVATGTPQEVMDNPNSLTGQYLSGKKFIPI 600 Query: 601 TSKRRATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQ 660 ++RR D RW+EI GAKENNLKNV+VKIPLG F AVTGVSGSGKS+LVNEILYK+LA++ Sbjct: 601 PAERRKPDGRWVEIVGAKENNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEILYKALAQK 660 Query: 661 LNKAVKVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNEA 720 L+ A K +PG+HK I+G+E+LDKVIDIDQSPIGRTPRSNPATYTGVFDDIR++F+ TNEA Sbjct: 661 LHGA-KAKPGEHKTIKGIEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIREVFAATNEA 719 Query: 721 KVRGFQKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYK 780 KVRG++KGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVC GKRYNRETLEV YK Sbjct: 720 KVRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 779 Query: 781 GKSISDVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTLSGGEAQRVKLA 840 GK+I++VL+MTVEDA EFF+NIPKI RK+QTL DVGLGY+ +GQP TTLSGGEAQRVKLA Sbjct: 780 GKNIAEVLDMTVEDALEFFENIPKIKRKLQTLYDVGLGYMKLGQPATTLSGGEAQRVKLA 839 Query: 841 SELYRRSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEHNLDVIKTADYL 900 SEL+RRS G+TLYILDEPTTGLHVDDI RLL+VL RLVD+G++VLVIEHNLDVIKTADY+ Sbjct: 840 SELHRRSNGRTLYILDEPTTGLHVDDISRLLKVLQRLVDNGDTVLVIEHNLDVIKTADYI 899 Query: 901 IDMGPEXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVLIRDTERTKAL 949 ID+G E PE++ EVE SYTG+YLKP+L RD ER +AL Sbjct: 900 IDLGSEGGDHGGQIVAKGTPEEVAEVESSYTGRYLKPILERDRERMRAL 948 >Q5KVB6.1 Q5KVB6_GEOKA Excinuclease ABC subunit A Length = 955 Score = 1412 bits (3654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 670/945 (70%), Positives = 793/945 (83%), Gaps = 1/945 (0%) Query: 4 ENIVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLSAYA 63 + IV+KGARAHNLKNIDV IPR + VV AFDTIYAEGQRRYVESLSAYA Sbjct: 5 DKIVVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 64 Query: 64 RQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHPHCP 123 RQFLGQMEKPDVD+I+GLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIG P CP Sbjct: 65 RQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRPICP 124 Query: 124 DHGIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVRVDG 183 HGIEI SQT+EQMVDR++ YPE+T++QILAP++SG+KG H DI KQG+VRVR+DG Sbjct: 125 THGIEIQSQTIEQMVDRLLAYPERTKMQILAPIVSGKKGTHAKTLEDIRKQGYVRVRIDG 184 Query: 184 ELREVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIGQEE 243 E+RE+TEDI LEKNKKH+ RL DSLETALKL+ G+++VD+IG+ E Sbjct: 185 EMRELTEDIELEKNKKHSIDVVVDRIIIKDGIAARLADSLETALKLADGKVVVDVIGEGE 244 Query: 244 LLFSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPDQEKSIEE 303 LLFS ACP CGFSI EL PR+FSFNSPFGACP+CDGLG K+ VD DL+IP+ E +++E Sbjct: 245 LLFSEKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLEVDLDLVIPNDELTLKE 304 Query: 304 GAFLAWTGSTSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEKIRFRYEND 363 A W +S YYPQ L++VC H+GIP +VPV L E ++K+L G+G E I FRY ND Sbjct: 305 HAIAPWEPQSSQYYPQLLEAVCRHYGIPMDVPVRDLPKEQLDKILYGSGGEPIYFRYTND 364 Query: 364 FGQRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEILAVTV 423 FGQ ++ +AFEG+IPN+ERRYRET+SD IRE +E +M+ +PC C+G RLKKE LAV V Sbjct: 365 FGQVREQYIAFEGVIPNVERRYRETSSDYIREQMEKYMAEQPCPTCQGYRLKKESLAVLV 424 Query: 424 NDRNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFLVNVGLNYLTLSRA 483 ++I +VT +S+ + L FFD + L+EKE IA LIL+EI RLGFL NVGL+YLTLSR+ Sbjct: 425 GGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRS 484 Query: 484 AGSLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLGHMRDLGNTLIV 543 AG+LSGGEAQRIRLATQIGS L GVLY+LDEPSIGLHQRDNDRLI+TL MRDLGNTLIV Sbjct: 485 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 544 Query: 544 VEHDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGEYLSGRKFIPVTSK 603 VEHDEDTM+AADY+IDIGPGAGIHGG+V+A GTP+E+MNDPNSLTG+YLSG+KFIP+ ++ Sbjct: 545 VEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAE 604 Query: 604 RRATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQLNK 663 RR D RW+E+ GA+E+NLKNV+VKIPLG F AVTGVSGSGKS+LVNE+LYK+LA++L++ Sbjct: 605 RRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHR 664 Query: 664 AVKVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNEAKVR 723 A K +PG+H+ IRGLE+LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRD+F+ TNEAKVR Sbjct: 665 A-KAKPGEHRGIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVR 723 Query: 724 GFQKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKS 783 G++KGRFSFNVKGGRCEAC GDGIIKIEMHFLPDVYVPCEVC GKRYNRETLEV YKGK+ Sbjct: 724 GYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKN 783 Query: 784 ISDVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTLSGGEAQRVKLASEL 843 I++VL+MTVEDA +FF +IPKI RK++TL DVGLGY+ +GQP TTLSGGEAQRVKLA+EL Sbjct: 784 IAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAEL 843 Query: 844 YRRSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEHNLDVIKTADYLIDM 903 +RRS G+TLYILDEPTTGLHVDDI RLL+VLHRLVD+G++VLVIEHNLDVIKTADY+ID+ Sbjct: 844 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDL 903 Query: 904 GPEXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVLIRDTERTKA 948 GPE PE++ EVEES+TG+YLKP+L RD R +A Sbjct: 904 GPEGGDRGGQIVAVGTPEEVAEVEESHTGRYLKPILERDRARMQA 948 >C0Z6Q5.1 C0Z6Q5_BREBN Excinuclease ABC subunit A Length = 955 Score = 1410 bits (3651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 675/945 (71%), Positives = 790/945 (83%), Gaps = 1/945 (0%) Query: 4 ENIVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLSAYA 63 E+IV+KGARAHNLKN+DV IPRD+FVV AFDTIYAEGQRRYVESLSAYA Sbjct: 4 EHIVVKGARAHNLKNVDVVIPRDKFVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 63 Query: 64 RQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHPHCP 123 RQFLGQM+KPDVDSI+GLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLL+AR+G CP Sbjct: 64 RQFLGQMDKPDVDSIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLYARVGRAVCP 123 Query: 124 DHGIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVRVDG 183 +HGIEI SQT+EQMVDR+++YPE+T++QILAP++ GRKGEH L DI KQGFVRVRV+G Sbjct: 124 EHGIEIQSQTIEQMVDRLLEYPERTKMQILAPMVQGRKGEHVKLLEDIRKQGFVRVRVNG 183 Query: 184 ELREVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIGQEE 243 E+ +++EDI LEKNKKH Q RL DSLETAL+L+ G+++VD++ QEE Sbjct: 184 EIIDLSEDIKLEKNKKHNIEVVVDRIVVKPDVQARLADSLETALRLADGKVIVDVMEQEE 243 Query: 244 LLFSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPDQEKSIEE 303 LLFS ACPVCGFSI +L PR+FSFNSPFGAC ECDGLG+K+ VDPD+++PD K++++ Sbjct: 244 LLFSEKHACPVCGFSIGDLEPRIFSFNSPFGACSECDGLGVKLEVDPDMVVPDATKTLDD 303 Query: 304 GAFLAWTGSTSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEKIRFRYEND 363 GA AW TS YY Q L+S C HF I +VP L+ H L+ G+ EKI FRYEN+ Sbjct: 304 GAIGAWEPKTSTYYQQLLESACRHFNIRMDVPYEELTAAHRQILMYGSEGEKIHFRYENE 363 Query: 364 FGQRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEILAVTV 423 FGQ ++A+V FEG++ NL+RR+ ET+SD IRE IEGFMS K C VCKG+RL++E LAV + Sbjct: 364 FGQVREAVVPFEGVVINLQRRHLETSSDYIREQIEGFMSQKACPVCKGQRLRQESLAVKI 423 Query: 424 NDRNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFLVNVGLNYLTLSRA 483 +R+I+++T LSI D QF D + L+E+ET IA+LI+KEI +RL FL++VGL+YLTLSRA Sbjct: 424 GERSISELTTLSILDAHQFVDGLELTERETKIANLIVKEIKARLNFLIDVGLDYLTLSRA 483 Query: 484 AGSLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLGHMRDLGNTLIV 543 AG+LSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDN RLI TL HM LGNTLIV Sbjct: 484 AGTLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNARLIKTLEHMTKLGNTLIV 543 Query: 544 VEHDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGEYLSGRKFIPVTSK 603 VEHDEDTMMA DYIIDIGPGAGIHGGQ++A GTP E+M DPNSLTG YLSGRKFIPV + Sbjct: 544 VEHDEDTMMACDYIIDIGPGAGIHGGQIVAAGTPDEVMEDPNSLTGAYLSGRKFIPVPME 603 Query: 604 RRATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQLNK 663 RR D+WI+I GAKENNLKNV K+PLGVF AVTGVSGSGKS+L+NEIL K+LAR LNK Sbjct: 604 RRKPSDKWIKIEGAKENNLKNVTAKLPLGVFVAVTGVSGSGKSTLINEILQKTLARDLNK 663 Query: 664 AVKVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNEAKVR 723 A KV+PG+H+ I GLE+LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLF+ TNEAKVR Sbjct: 664 A-KVKPGEHRRILGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFASTNEAKVR 722 Query: 724 GFQKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKS 783 G++KGRFSFNVKGGRCEAC GDGIIKIEMHFLPDVYVPCEVC GKRYNRETL+VKYKGKS Sbjct: 723 GYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLDVKYKGKS 782 Query: 784 ISDVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTLSGGEAQRVKLASEL 843 I+DVLEMT+ED EFF+N+PKI RK+QT++DVGLGY+ +GQP TTLSGGEAQRVKLASEL Sbjct: 783 IADVLEMTIEDGVEFFRNLPKIERKLQTIVDVGLGYMKLGQPATTLSGGEAQRVKLASEL 842 Query: 844 YRRSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEHNLDVIKTADYLIDM 903 YRRSTG+TLYILDEPTTGLH DDI RLL+VL RLV++G++VLVIEHNLDVIKT DY++D+ Sbjct: 843 YRRSTGRTLYILDEPTTGLHTDDIDRLLKVLQRLVENGDTVLVIEHNLDVIKTVDYIVDL 902 Query: 904 GPEXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVLIRDTERTKA 948 GPE PE++ ++E SYTG YLKP+L RD ERT A Sbjct: 903 GPEGGTRGGEIVGTGTPEEVAKMEGSYTGIYLKPILERDKERTNA 947 >O34863.1 UVRA_BACSU UvrABC system protein A Length = 957 Score = 1409 bits (3647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 675/949 (71%), Positives = 794/949 (83%), Gaps = 1/949 (0%) Query: 1 LANENIVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLS 60 +A + I +KGARAHNLKNIDVTIPRD+ VV AFDTIYAEGQRRYVESLS Sbjct: 1 MAMDRIEVKGARAHNLKNIDVTIPRDQLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLS 60 Query: 61 AYARQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHP 120 AYARQFLGQM+KPDVD+I+GLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLL+AR+G P Sbjct: 61 AYARQFLGQMDKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLYARVGKP 120 Query: 121 HCPDHGIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVR 180 HCP+HGIEITSQT+EQMVDRI++YPE+T+LQ+LAP++SGRKG H + I KQG+VRVR Sbjct: 121 HCPEHGIEITSQTIEQMVDRILEYPERTKLQVLAPIVSGRKGAHVKVLEQIRKQGYVRVR 180 Query: 181 VDGELREVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIG 240 +DGE+ E+++DI LEKNKKH+ RL+DSLETAL+L G++++D+IG Sbjct: 181 IDGEMAELSDDIELEKNKKHSIEVVIDRIVVKEGVAARLSDSLETALRLGEGRVMIDVIG 240 Query: 241 QEELLFSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPDQEKS 300 +EEL+FS ACP CGFSI EL PR+FSFNSPFGACP CDGLGMK+ VD DL+IP+Q+ S Sbjct: 241 EEELMFSEHHACPHCGFSIGELEPRLFSFNSPFGACPTCDGLGMKLEVDADLVIPNQDLS 300 Query: 301 IEEGAFLAWTGSTSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEKIRFRY 360 ++E A WT +S YYPQ L++VC H+GI +VPV L ++K+L G+G + I FRY Sbjct: 301 LKENAVAPWTPISSQYYPQLLEAVCTHYGIDMDVPVKDLPKHQLDKVLYGSGDDLIYFRY 360 Query: 361 ENDFGQRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEILA 420 ENDFGQ ++ + FEG++ N+ERRY+ET SD IRE +E +MS K C CKG RLKKE LA Sbjct: 361 ENDFGQIREGEIQFEGVLRNIERRYKETGSDFIREQMEQYMSQKSCPTCKGYRLKKEALA 420 Query: 421 VTVNDRNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFLVNVGLNYLTL 480 V ++ R+I +T+LS+ D L FF ++ LSEK+ IA+LIL+EI RL FL VGL+YLTL Sbjct: 421 VLIDGRHIGKITELSVADALAFFKDLTLSEKDMQIANLILREIVERLSFLDKVGLDYLTL 480 Query: 481 SRAAGSLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLGHMRDLGNT 540 SRAAG+LSGGEAQRIRLATQIGS L GVLYILDEPSIGLHQRDNDRLIS L +MRDLGNT Sbjct: 481 SRAAGTLSGGEAQRIRLATQIGSRLSGVLYILDEPSIGLHQRDNDRLISALKNMRDLGNT 540 Query: 541 LIVVEHDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGEYLSGRKFIPV 600 LIVVEHDEDTMMAADY+IDIGPGAGIHGGQV++ GTP+E+M DPNSLTG YLSG+KFIP+ Sbjct: 541 LIVVEHDEDTMMAADYLIDIGPGAGIHGGQVISAGTPEEVMEDPNSLTGSYLSGKKFIPL 600 Query: 601 TSKRRATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQ 660 +RR D R+IEI+GA ENNLK VN K PLG FTAVTGVSGSGKS+LVNEIL+K+LA++ Sbjct: 601 PPERRKPDGRYIEIKGASENNLKKVNAKFPLGTFTAVTGVSGSGKSTLVNEILHKALAQK 660 Query: 661 LNKAVKVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNEA 720 L+KA K +PG HKEI+GL++LDKVIDIDQ+PIGRTPRSNPATYTGVFDDIRD+F++TNEA Sbjct: 661 LHKA-KAKPGSHKEIKGLDHLDKVIDIDQAPIGRTPRSNPATYTGVFDDIRDVFAQTNEA 719 Query: 721 KVRGFQKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYK 780 KVRG++KGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVC GKRYNRETLEV YK Sbjct: 720 KVRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 779 Query: 781 GKSISDVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTLSGGEAQRVKLA 840 GKSISDVL+MTVEDA FF+NIPKI RK+QTL DVGLGYI +GQP TTLSGGEAQRVKLA Sbjct: 780 GKSISDVLDMTVEDALSFFENIPKIKRKLQTLYDVGLGYITLGQPATTLSGGEAQRVKLA 839 Query: 841 SELYRRSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEHNLDVIKTADYL 900 SEL++RSTG+TLYILDEPTTGLHVDDI RLL VL RLVD+G++VLVIEHNLD+IKTADY+ Sbjct: 840 SELHKRSTGRTLYILDEPTTGLHVDDIARLLVVLQRLVDNGDTVLVIEHNLDIIKTADYI 899 Query: 901 IDMGPEXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVLIRDTERTKAL 949 +D+GPE PE+I EVEESYTG+YLKPV+ RD R K+L Sbjct: 900 VDLGPEGGAGGGTIVASGTPEEITEVEESYTGRYLKPVIERDKTRMKSL 948 >A7Z984.1 A7Z984_BACA2 UvrA Length = 957 Score = 1407 bits (3642), Expect = 0.0, Method: Compositional matrix adjust. Identities = 672/949 (70%), Positives = 795/949 (83%), Gaps = 1/949 (0%) Query: 1 LANENIVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLS 60 +A + I +KGARAHNLKNIDVTIPRD+ VV AFDTIYAEGQRRYVESLS Sbjct: 1 MAIDRIEVKGARAHNLKNIDVTIPRDQLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLS 60 Query: 61 AYARQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHP 120 AYARQFLGQM+KPDVD+I+GLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLL+AR+G P Sbjct: 61 AYARQFLGQMDKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLYARVGKP 120 Query: 121 HCPDHGIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVR 180 HCP+HGIEITSQT+EQMVDRI++YPE+T+LQ+LAP+ISGRKG H + I KQG+VRVR Sbjct: 121 HCPEHGIEITSQTIEQMVDRILEYPERTKLQVLAPIISGRKGAHVKVLDQIRKQGYVRVR 180 Query: 181 VDGELREVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIG 240 +DGE+ E+++DI LEKNKKH+ RL+DSLETAL+L G++++D+IG Sbjct: 181 IDGEMAELSDDIELEKNKKHSIEVVIDRIVVKEGVAARLSDSLETALRLGEGRVMIDVIG 240 Query: 241 QEELLFSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPDQEKS 300 QEEL+FS ACP+CGFSI EL PR+FSFNSPFGACP CDGLG+K+ VDP+L+IP+ E S Sbjct: 241 QEELMFSEHHACPLCGFSIGELEPRLFSFNSPFGACPTCDGLGLKLEVDPELVIPNPELS 300 Query: 301 IEEGAFLAWTGSTSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEKIRFRY 360 ++E A WT +S YYPQ L++VC H+GI PV L ++K+L G+G E+I F+Y Sbjct: 301 LKEHAIAPWTPISSQYYPQLLQAVCRHYGIDMETPVKDLPKHQLDKVLYGSGDERIYFKY 360 Query: 361 ENDFGQRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEILA 420 ENDFGQ ++ + FEG++ N+ERRY+ET+SD IRE +E +MS K C CKG RLKKE LA Sbjct: 361 ENDFGQVRENEIEFEGVLRNIERRYKETSSDYIREQMEQYMSQKSCPTCKGYRLKKEALA 420 Query: 421 VTVNDRNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFLVNVGLNYLTL 480 V VN R+I +T+LS+GD L+FF N+ LSEK+ IA LIL+EI RL FL VGL+YLTL Sbjct: 421 VLVNGRHIGTITELSVGDALEFFKNLTLSEKDMQIADLILREIVERLSFLDKVGLDYLTL 480 Query: 481 SRAAGSLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLGHMRDLGNT 540 SRAAG+LSGGEAQRIRLATQIGS L GVLYILDEPSIGLHQRDNDRLIS L +MRDLGNT Sbjct: 481 SRAAGTLSGGEAQRIRLATQIGSRLSGVLYILDEPSIGLHQRDNDRLISALKNMRDLGNT 540 Query: 541 LIVVEHDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGEYLSGRKFIPV 600 LIVVEHDEDTMMAADY+IDIGPGAGIHGG+V++ GTP+E+MND +SLTG YLSG +FIP+ Sbjct: 541 LIVVEHDEDTMMAADYLIDIGPGAGIHGGRVISAGTPEEVMNDADSLTGRYLSGAQFIPM 600 Query: 601 TSKRRATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQ 660 +RR D R+IEI+GA ENNLK N K PLG FTAVTGVSGSGKS+LVNEIL+K+LA++ Sbjct: 601 PPERRKPDGRFIEIKGASENNLKKANAKFPLGTFTAVTGVSGSGKSTLVNEILHKALAQK 660 Query: 661 LNKAVKVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNEA 720 L+KA K +PG HKEI+GL++LDKVIDIDQ+PIGRTPRSNPATYTGVFDDIRD+F++TNEA Sbjct: 661 LHKA-KAKPGSHKEIKGLDHLDKVIDIDQAPIGRTPRSNPATYTGVFDDIRDVFAQTNEA 719 Query: 721 KVRGFQKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYK 780 KVRG++KGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVC GKRYNRETLEV YK Sbjct: 720 KVRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 779 Query: 781 GKSISDVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTLSGGEAQRVKLA 840 GKSISDVL+MTVEDA FF+NIPKI RK+QTL DVGLGY+ +GQP TTLSGGEAQRVKLA Sbjct: 780 GKSISDVLDMTVEDALSFFENIPKIKRKLQTLADVGLGYVTLGQPATTLSGGEAQRVKLA 839 Query: 841 SELYRRSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEHNLDVIKTADYL 900 SEL++RSTG+TLYILDEPTTGLHVDDI RLL VL RLVD+G++VLVIEHNLD+IKTADY+ Sbjct: 840 SELHKRSTGRTLYILDEPTTGLHVDDIARLLVVLQRLVDNGDTVLVIEHNLDIIKTADYI 899 Query: 901 IDMGPEXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVLIRDTERTKAL 949 +D+GPE PE+++EV+ESYTG+YLKPV+ RD +R K L Sbjct: 900 VDLGPEGGAGGGTIVASGTPEEVVEVKESYTGRYLKPVMERDKKRMKTL 948 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 5,378,528,673 Number of extensions: 229468701 Number of successful extensions: 894403 Number of sequences better than 1.0e-05: 2409 Number of HSP's gapped: 884434 Number of HSP's successfully gapped: 4941 Length of query: 957 Length of database: 3,060,696,203 Length adjustment: 146 Effective length of query: 811 Effective length of database: 1,685,228,013 Effective search space: 1366719918543 Effective search space used: 1366719918543 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)