BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0015.p (663 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7B7.1 B3K7B7_9BACI UvrABC system protein B 1118 0.0 A8FHT5.1 A8FHT5_BACP2 UvrABC system protein B 947 0.0 Q5WDG7.1 UVRB_BACSK UvrABC system protein B 945 0.0 C0Z6Q6.1 C0Z6Q6_BREBN Excinuclease ABC subunit B 944 0.0 P37954.2 UVRB_BACSU UvrABC system protein B 942 0.0 >B3K7B7.1 B3K7B7_9BACI UvrABC system protein B Length = 663 Score = 1118 bits (2893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/647 (84%), Positives = 587/647 (90%) Query: 1 MSDIVVSTQTFQLESEYTPQGDQPHAIQELVDGIRQGKKHQTLLGATGTGKTFTIAQMIS 60 MSD+VVST++F+++SE+ PQGDQP AI LV+G+RQGKKHQTLLGATGTGKTFTIAQ I+ Sbjct: 1 MSDLVVSTKSFEIQSEFQPQGDQPTAIDALVEGLRQGKKHQTLLGATGTGKTFTIAQTIA 60 Query: 61 KLNRPTLVIAHNKTLAAQLASEFKEFFPSNXXXXXXXXXXXXQPEAYIPSSDTYIEKDSS 120 K+NRPTLVIAHNKTLAAQLASEFKEFFP+N QPEAYIPSSDTYIEKDSS Sbjct: 61 KVNRPTLVIAHNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSS 120 Query: 121 INEEIDKLRHSATSSLFERRDVIIVASVSCIYGLGSPKEYGSLLLSLRVGMEKPRNQILS 180 INEEIDKLRHSATSSLFERRDVIIVASVSCIYGLGSP EYG +LLSLRVGMEKPRN+ILS Sbjct: 121 INEEIDKLRHSATSSLFERRDVIIVASVSCIYGLGSPHEYGEMLLSLRVGMEKPRNEILS 180 Query: 181 RLVDIQYQRNDINFVRGTFRVRGDVVEIFPASQGEHAIRVELFGDEIERITEIDVLTGEL 240 RLVDIQYQRNDINFVRGTFRVRGDVVEIFPAS+GEHA+RVELFGDEIERITEIDVLTGEL Sbjct: 181 RLVDIQYQRNDINFVRGTFRVRGDVVEIFPASKGEHAVRVELFGDEIERITEIDVLTGEL 240 Query: 241 IGERDHVAIFPASHFVTQEETMRVALVNIXXXXXXXXAVLRDAGKLLEAQRLEQRTRYDI 300 +GER+H+AIFPASHFVT+EETMRVALVNI +LR GKLLEAQRLEQRTRYDI Sbjct: 241 VGEREHIAIFPASHFVTREETMRVALVNIERELEERLELLRSEGKLLEAQRLEQRTRYDI 300 Query: 301 EMMKEVGFCSGIENYSGPLTFREPGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGD 360 EMMKEVGFCSGIENYSGPLTFREPGATPYTL+DYFPDDML VIDESHVTLPQIRAMYNGD Sbjct: 301 EMMKEVGFCSGIENYSGPLTFREPGATPYTLLDYFPDDMLFVIDESHVTLPQIRAMYNGD 360 Query: 361 RARKTVLVEHGFRLPSALDNRPLQFEEFEDKVNQIVYVSATPGPYELEHCDTMVEQIIRP 420 RARKTVLV+HGFRLPSALDNRPL+FEEFE+KVNQI+YVSATPGPYE+EHCDTMVEQIIRP Sbjct: 361 RARKTVLVDHGFRLPSALDNRPLKFEEFEEKVNQIIYVSATPGPYEMEHCDTMVEQIIRP 420 Query: 421 TGLLDPIIEVRPTEGQIDDLISXXXXXXXXXXXXXXTTLTKKMSEDLTDYFKEIGIKVRY 480 TGLLDPII+VRPTEGQIDDLI TTLTKKM+EDLTDY KEIGIKVRY Sbjct: 421 TGLLDPIIDVRPTEGQIDDLIGEIHDRVDRDERVLVTTLTKKMAEDLTDYLKEIGIKVRY 480 Query: 481 MHSDIKTLERMAILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSL 540 MHSDIKTLERM ILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRS+RSL Sbjct: 481 MHSDIKTLERMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDRSL 540 Query: 541 IQTIGRAARNSNGRVIMYGDHITESMEKAMTETQRRRETQIAYNEKHGITPTTINKKVRD 600 IQTIGRAARNS G+VIMYGD IT+SM++A+ ET+RRR Q+AYNE+HGITP TI KKVRD Sbjct: 541 IQTIGRAARNSEGKVIMYGDKITDSMDRAIKETERRRSIQVAYNEEHGITPQTIRKKVRD 600 Query: 601 IIEATKVAESKAEYLTGVGGKMSKKDRQSLMQRLEAEMKDAAKNLQF 647 +IEATKVAE KA+YL G G KMSKK+RQ L+QRLEAEMK+AAKNLQF Sbjct: 601 VIEATKVAEGKADYLVGEGQKMSKKERQKLIQRLEAEMKEAAKNLQF 647 >A8FHT5.1 A8FHT5_BACP2 UvrABC system protein B Length = 661 Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/640 (72%), Positives = 529/640 (82%), Gaps = 3/640 (0%) Query: 11 FQLESEYTPQGDQPHAIQELVDGIRQGKKHQTLLGATGTGKTFTIAQMISKLNRPTLVIA 70 F+L S Y PQGDQP AI++LV+GI QGK+HQTLLGATGTGKTFT++ +I ++N+PTLVIA Sbjct: 5 FELVSNYQPQGDQPKAIEKLVEGIHQGKQHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64 Query: 71 HNKTLAAQLASEFKEFFPSNXXXXXXXXXXXXQPEAYIPSSDTYIEKDSSINEEIDKLRH 130 HNKTLA QL SEFKEFFP+N QPEAY+P +DT+IEKD+SIN+EIDKLRH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 131 SATSSLFERRDVIIVASVSCIYGLGSPKEYGSLLLSLRVGMEKPRNQILSRLVDIQYQRN 190 SATSSLFERRDVII+ASVSCIYGLGSP+EY L+LSLR ME RNQ+L +LVDIQY RN Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYRELVLSLRTEMEIERNQLLRKLVDIQYSRN 184 Query: 191 DINFVRGTFRVRGDVVEIFPASQGEHAIRVELFGDEIERITEIDVLTGELIGERDHVAIF 250 DI+F RGTFRVRGDVVEIFPAS+ EH IRVE FGDEIERI E+D LTGE++G+R+HVAIF Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDREHVAIF 244 Query: 251 PASHFVTQEETMRVALVNIXXXXXXXXAVLRDAGKLLEAQRLEQRTRYDIEMMKEVGFCS 310 PASHFVT+EE M A+VNI LRD GKLLEAQRLEQRTRYD+EMM+E+GFCS Sbjct: 245 PASHFVTREEKMEKAIVNIEQELEEQLEKLRDNGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 311 GIENYSGPLTFREPGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGDRARKTVLVEH 370 GIENYS LT R PG+TPYTL+DYFPDD +IV+DESHVT+PQIRAMYNGD+ARK VLV+H Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTVPQIRAMYNGDQARKQVLVDH 364 Query: 371 GFRLPSALDNRPLQFEEFEDKVNQIVYVSATPGPYELEHCDTMVEQIIRPTGLLDPIIEV 430 GFRLPSALDNRPL F+EFE +N IV+VSATPGPYELE +VEQIIRPTGLLDPIIEV Sbjct: 365 GFRLPSALDNRPLTFDEFEKHINHIVHVSATPGPYELEKTPEVVEQIIRPTGLLDPIIEV 424 Query: 431 RPTEGQIDDLISXXXXXXXXXXXXXXTTLTKKMSEDLTDYFKEIGIKVRYMHSDIKTLER 490 RP EGQIDDLI TTLTKKMSEDLTDY KEIGIKV Y+HS+IKTLER Sbjct: 425 RPIEGQIDDLIGEIHARIEKNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLER 484 Query: 491 MAILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 550 + I+RDLRLG + VLVGINLLREGLD+PEVSLV ILDADKEGFLRSERSLIQTIGRAARN Sbjct: 485 IEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAARN 544 Query: 551 SNGRVIMYGDHITESMEKAMTETQRRRETQIAYNEKHGITPTTINKKVRDIIEATKVAES 610 S GRVIMY D +T+SM+ A+ ET+RRRE Q AYNEK+GITP TI+KK+RD I+ATK+ E Sbjct: 545 SEGRVIMYADKMTKSMDIAIQETKRRREQQEAYNEKYGITPQTIHKKIRDAIKATKIHEE 604 Query: 611 KAEYLTGVG---GKMSKKDRQSLMQRLEAEMKDAAKNLQF 647 EY T KMSKK+R+ +++++E EMKDAAK L F Sbjct: 605 SEEYETNAAPKLSKMSKKEREKVIEKVELEMKDAAKALDF 644 >Q5WDG7.1 UVRB_BACSK UvrABC system protein B Length = 660 Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/641 (70%), Positives = 527/641 (82%), Gaps = 2/641 (0%) Query: 9 QTFQLESEYTPQGDQPHAIQELVDGIRQGKKHQTLLGATGTGKTFTIAQMISKLNRPTLV 68 QTFQL S+Y+PQGDQP AI+++V GI+ GKKHQTLLGATGTGKTFT++ +I +N+PTLV Sbjct: 3 QTFQLVSDYSPQGDQPKAIEQIVTGIQNGKKHQTLLGATGTGKTFTMSNVIQAVNKPTLV 62 Query: 69 IAHNKTLAAQLASEFKEFFPSNXXXXXXXXXXXXQPEAYIPSSDTYIEKDSSINEEIDKL 128 +AHNKTLA QL SEFK+ FP+N QPEAY+PSSDT+IEKD+SIN+EIDKL Sbjct: 63 MAHNKTLAGQLYSEFKQLFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDEIDKL 122 Query: 129 RHSATSSLFERRDVIIVASVSCIYGLGSPKEYGSLLLSLRVGMEKPRNQILSRLVDIQYQ 188 RHSATSSLFERRDVII+ASVSCIYGLGSP+EY L+LS+R GME RN +L +LVDIQY Sbjct: 123 RHSATSSLFERRDVIIIASVSCIYGLGSPEEYRDLVLSIRTGMEMDRNSLLRKLVDIQYD 182 Query: 189 RNDINFVRGTFRVRGDVVEIFPASQGEHAIRVELFGDEIERITEIDVLTGELIGERDHVA 248 RNDINFVRGTFRVRGDVVEIFPAS+ E +RVE FGDEIERITE+D LTGE+ GER HV+ Sbjct: 183 RNDINFVRGTFRVRGDVVEIFPASRDEQCMRVEFFGDEIERITEVDALTGEIKGERHHVS 242 Query: 249 IFPASHFVTQEETMRVALVNIXXXXXXXXAVLRDAGKLLEAQRLEQRTRYDIEMMKEVGF 308 IFPASHFVT+EE M+ A+ NI +VLR KLLEAQRLEQRTRYD+EMM E+GF Sbjct: 243 IFPASHFVTREEKMKKAIANIEVELEERLSVLRKEEKLLEAQRLEQRTRYDLEMMAEMGF 302 Query: 309 CSGIENYSGPLTFREPGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGDRARKTVLV 368 CSGIENYS LT RE GATPYTL+D+FP D L+++DESHVTLPQ+R MYNGDRARK +LV Sbjct: 303 CSGIENYSRHLTLREAGATPYTLLDFFPKDFLLIVDESHVTLPQVRGMYNGDRARKEILV 362 Query: 369 EHGFRLPSALDNRPLQFEEFEDKVNQIVYVSATPGPYELEHCDTMVEQIIRPTGLLDPII 428 HGFRLPSALDNRPL+FEEFE+KV Q VYVSATPGPYELEH MVEQIIRPTGLLDP++ Sbjct: 363 NHGFRLPSALDNRPLKFEEFEEKVGQAVYVSATPGPYELEHTPEMVEQIIRPTGLLDPVV 422 Query: 429 EVRPTEGQIDDLISXXXXXXXXXXXXXXTTLTKKMSEDLTDYFKEIGIKVRYMHSDIKTL 488 EVRP EGQIDDLI TTLTKKM+EDLTDY KEIGIKVRY+HS++KTL Sbjct: 423 EVRPIEGQIDDLIGQIHDQIAKDERVLVTTLTKKMAEDLTDYLKEIGIKVRYLHSEVKTL 482 Query: 489 ERMAILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAA 548 ER+ I+R LRLGTF VL+GINLLREG+D+PEVSLVAILDADKEGFLR+ERSLIQTIGRAA Sbjct: 483 ERLEIIRQLRLGTFDVLIGINLLREGIDIPEVSLVAILDADKEGFLRAERSLIQTIGRAA 542 Query: 549 RNSNGRVIMYGDHITESMEKAMTETQRRRETQIAYNEKHGITPTTINKKVRDIIEATKVA 608 RN+NGRVIMY D +T SME A+ ET+RRR+ Q AYNE+HGITP TI K++ ++++AT A Sbjct: 543 RNANGRVIMYADKMTHSMEVAINETKRRRQIQQAYNEQHGITPQTIQKRIPEVVQATYAA 602 Query: 609 ESKAEYLTG--VGGKMSKKDRQSLMQRLEAEMKDAAKNLQF 647 E +Y K+ KK+RQ+ ++R+EAEMK AAK L F Sbjct: 603 EETGDYKASSTSSKKLGKKERQATIERVEAEMKQAAKELNF 643 >C0Z6Q6.1 C0Z6Q6_BREBN Excinuclease ABC subunit B Length = 658 Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/640 (71%), Positives = 527/640 (82%), Gaps = 1/640 (0%) Query: 9 QTFQLESEYTPQGDQPHAIQELVDGIRQGKKHQTLLGATGTGKTFTIAQMISKLNRPTLV 68 + F+L SE+ P GDQP AI ELV G++ GK+HQTLLGATGTGKT+T AQ+I+++NRPTLV Sbjct: 2 ERFELVSEFQPSGDQPTAIAELVAGLQAGKRHQTLLGATGTGKTYTAAQVIAQVNRPTLV 61 Query: 69 IAHNKTLAAQLASEFKEFFPSNXXXXXXXXXXXXQPEAYIPSSDTYIEKDSSINEEIDKL 128 +AHNKTLAAQL +EFKEFFP+N QPEAYIP SDT+IEKDSSIN+EIDKL Sbjct: 62 MAHNKTLAAQLCAEFKEFFPNNAVEYFVSYYDYYQPEAYIPQSDTFIEKDSSINDEIDKL 121 Query: 129 RHSATSSLFERRDVIIVASVSCIYGLGSPKEYGSLLLSLRVGMEKPRNQILSRLVDIQYQ 188 RHSATS+LFERRDVIIVASVSCIYGLGSP+EY LLLSLRVGME R++IL RLVDIQY Sbjct: 122 RHSATSALFERRDVIIVASVSCIYGLGSPEEYRELLLSLRVGMETGRDEILHRLVDIQYT 181 Query: 189 RNDINFVRGTFRVRGDVVEIFPASQGEHAIRVELFGDEIERITEIDVLTGELIGERDHVA 248 RNDINF RGTFRVRGDVVEIFPAS+ E AIRVE FGDEIERIT IDVLTGE++G+RDH+A Sbjct: 182 RNDINFTRGTFRVRGDVVEIFPASESEQAIRVEFFGDEIERITSIDVLTGEILGQRDHIA 241 Query: 249 IFPASHFVTQEETMRVALVNIXXXXXXXXAVLRDAGKLLEAQRLEQRTRYDIEMMKEVGF 308 IFP SH+VT+EE M++A+ +I RDAGKLLEAQRLEQRTRYDIEMM E+GF Sbjct: 242 IFPKSHYVTREEKMKLAVQSIEAELEERLKEFRDAGKLLEAQRLEQRTRYDIEMMMEMGF 301 Query: 309 CSGIENYSGPLTFREPGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGDRARKTVLV 368 CSGIENYS LT G PYTL+DYFP+D ++++DESH+TLPQ+R MYNGDRARK VLV Sbjct: 302 CSGIENYSRHLTGLPAGHAPYTLLDYFPEDFIVMMDESHMTLPQVRGMYNGDRARKDVLV 361 Query: 369 EHGFRLPSALDNRPLQFEEFEDKVNQIVYVSATPGPYELEHCDTMVEQIIRPTGLLDPII 428 EHGFRLPSA DNRPL+FEEFE K+ Q +Y+SATPG YELEH MV+Q+IRPTGL+DP I Sbjct: 362 EHGFRLPSARDNRPLKFEEFEAKLKQAIYISATPGLYELEHSPEMVQQVIRPTGLIDPTI 421 Query: 429 EVRPTEGQIDDLISXXXXXXXXXXXXXXTTLTKKMSEDLTDYFKEIGIKVRYMHSDIKTL 488 VRP +GQIDDLI TTLTKKMSEDLTDY KEIGIKVRY+HSDIKT+ Sbjct: 422 TVRPIKGQIDDLIGEIQATIAKNERVLVTTLTKKMSEDLTDYLKEIGIKVRYLHSDIKTI 481 Query: 489 ERMAILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAA 548 ERM ILR LRLG F VLVGINLLREGLDLPEVSLVAILDADKEGFLR+ERSLIQTIGRAA Sbjct: 482 ERMQILRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNERSLIQTIGRAA 541 Query: 549 RNSNGRVIMYGDHITESMEKAMTETQRRRETQIAYNEKHGITPTTINKKVRDIIEATKVA 608 RN+ GRVIMY D +T+SM A+ ET+RRR Q+AYNE+HGITP T+ K VRD+IEATKVA Sbjct: 542 RNAEGRVIMYADKMTDSMASAIRETERRRSIQMAYNEEHGITPQTVKKSVRDVIEATKVA 601 Query: 609 ESKAEYLTGVG-GKMSKKDRQSLMQRLEAEMKDAAKNLQF 647 E KA+YL KM KKDR ++++R+E EMK+AA+NL F Sbjct: 602 EEKADYLPHADFKKMPKKDRVAVIERMEEEMKEAARNLMF 641 >P37954.2 UVRB_BACSU UvrABC system protein B Length = 661 Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/640 (70%), Positives = 531/640 (82%), Gaps = 3/640 (0%) Query: 11 FQLESEYTPQGDQPHAIQELVDGIRQGKKHQTLLGATGTGKTFTIAQMISKLNRPTLVIA 70 F+L S+Y PQGDQP AI++LV GI++GKKHQTLLGATGTGKTFT++ +I ++N+PTLVIA Sbjct: 5 FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64 Query: 71 HNKTLAAQLASEFKEFFPSNXXXXXXXXXXXXQPEAYIPSSDTYIEKDSSINEEIDKLRH 130 HNKTLA QL SEFKEFFP+N QPEAY+P +DT+IEKD+SIN+EIDKLRH Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124 Query: 131 SATSSLFERRDVIIVASVSCIYGLGSPKEYGSLLLSLRVGMEKPRNQILSRLVDIQYQRN 190 SATS+LFERRDVII+ASVSCIYGLGSP+EY +++SLR ME RN++L +LVDIQY RN Sbjct: 125 SATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARN 184 Query: 191 DINFVRGTFRVRGDVVEIFPASQGEHAIRVELFGDEIERITEIDVLTGELIGERDHVAIF 250 DI+F RGTFRVRGDVVEIFPAS+ EH +RVE FGDEIERI E+D LTGE++G+RDHVAIF Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244 Query: 251 PASHFVTQEETMRVALVNIXXXXXXXXAVLRDAGKLLEAQRLEQRTRYDIEMMKEVGFCS 310 PASHFVT+ E M A+ NI V+ + GKLLEAQRLEQRTRYD+EMM+E+GFCS Sbjct: 245 PASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCS 304 Query: 311 GIENYSGPLTFREPGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGDRARKTVLVEH 370 GIENYS LT R PG+TPYTL+DYFPDD +IV+DESHVT+PQ+R M+NGD+ARK VLV+H Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364 Query: 371 GFRLPSALDNRPLQFEEFEDKVNQIVYVSATPGPYELEHCDTMVEQIIRPTGLLDPIIEV 430 GFRLPSALDNRPL+FEEFE ++ IVYVSATPGPYE+EH D MVEQIIRPTGLLDP+I+V Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDEMVEQIIRPTGLLDPLIDV 424 Query: 431 RPTEGQIDDLISXXXXXXXXXXXXXXTTLTKKMSEDLTDYFKEIGIKVRYMHSDIKTLER 490 RP EGQIDDLI TTLTKKMSEDLTDY KEIGIKV Y+HS+IKTLER Sbjct: 425 RPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLER 484 Query: 491 MAILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 550 + I+RDLRLG + VLVGINLLREGLD+PEVSLVAILDADKEGFLRSERSLIQTIGRAARN Sbjct: 485 IEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 544 Query: 551 SNGRVIMYGDHITESMEKAMTETQRRRETQIAYNEKHGITPTTINKKVRDIIEATKVAES 610 + GRVIMY D IT+SME A+ ET+RRRE Q +NE+HGITP TINK++RD+I AT AE Sbjct: 545 AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAED 604 Query: 611 KAEYLTGVG---GKMSKKDRQSLMQRLEAEMKDAAKNLQF 647 KAEY T KM+KK+RQ +++++E EMK+AAK L F Sbjct: 605 KAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDF 644 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,396,377,617 Number of extensions: 135074543 Number of successful extensions: 398041 Number of sequences better than 1.0e-05: 2067 Number of HSP's gapped: 396361 Number of HSP's successfully gapped: 2073 Length of query: 663 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 520 Effective length of database: 1,713,491,058 Effective search space: 891015350160 Effective search space used: 891015350160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)