BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0014.p (261 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7B9.1 B3K7B9_9BACI MotA/TolQ/ExbB proton channel 327 5e-88 A5D0E9.1 A5D0E9_PELTS Flagellar motor component 216 1e-54 C1TIL6.1 C1TIL6_9FIRM Flagellar motor component 216 2e-54 Q24T21.1 Q24T21_DESHY Putative uncharacterized protein 216 2e-54 Q3ADH4.1 Q3ADH4_CARHZ Chemotaxis motA protein 214 6e-54 >B3K7B9.1 B3K7B9_9BACI MotA/TolQ/ExbB proton channel Length = 264 Score = 327 bits (839), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 165/261 (63%), Positives = 202/261 (77%), Gaps = 2/261 (0%) Query: 1 MDITSIIXXXXXXXXXXXXFFWEGGSLSGLLQLNAALIVFGGTLAAVMVSFPASRLRSVP 60 MDIT I+ F WEGG LSGLLQ AALIVFGGT AAV+VSFPA+RLR++P Sbjct: 1 MDITIILGILAGLAALIGGFLWEGGHLSGLLQGAAALIVFGGTFAAVIVSFPATRLRTIP 60 Query: 61 AALRLAFGRHADTTEEQAEELISMAAVTRRSGVLALEKRAEEHPDPFTGEGLMLIVDGTD 120 AAL+LAFGR +T+E + ++ M+ RR GVLALE+ + EH DPF EG+ ++VDG D Sbjct: 61 AALKLAFGRSNRSTDELIDAIVDMSVTARRDGVLALERISAEHEDPFLREGMQMVVDGND 120 Query: 121 PEQVRQILELEMDAKELKYEGYAKIFEAAGGYAPTMGIIGTVMGLIRVLSNLTDPSNLGA 180 PE VRQILEL+++A E K+EGYAKIFE+AGGYAPTMGIIGTVMGLI VL +L DP+ LG Sbjct: 121 PEMVRQILELDINAAEQKHEGYAKIFESAGGYAPTMGIIGTVMGLIHVLGSLQDPTGLGP 180 Query: 181 SIAVAFTATLYGVASANLIFLPIASKIKSRSQSELGSMEMLMVGILALQNGDHPQLVRKK 240 SIAVAFTATLYGVASAN+IFLPIASKIK+RS+ E+ ME+L+ GI+A+QNG+HP LVRKK Sbjct: 181 SIAVAFTATLYGVASANIIFLPIASKIKARSEEEIVKMELLLEGIMAVQNGEHPLLVRKK 240 Query: 241 LRSFLNRSAEERSTGNTRGLS 261 L SF SA ++RG++ Sbjct: 241 LASF--ASAGNTDIPSSRGIA 259 >A5D0E9.1 A5D0E9_PELTS Flagellar motor component Length = 262 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 113/246 (45%), Positives = 161/246 (65%) Query: 1 MDITSIIXXXXXXXXXXXXFFWEGGSLSGLLQLNAALIVFGGTLAAVMVSFPASRLRSVP 60 M++TS++ F +GG + LL+ AALIVFGGT+ A +VSF + L +VP Sbjct: 1 MELTSLVGLAIAVVSLVAAFVLDGGHIMALLKPTAALIVFGGTIGATIVSFSFNELAAVP 60 Query: 61 AALRLAFGRHADTTEEQAEELISMAAVTRRSGVLALEKRAEEHPDPFTGEGLMLIVDGTD 120 ++ + E+++ +A RR G+L LE + + D F +G+ L+VDGTD Sbjct: 61 RLFKVILFQKLPDEVALIEQIVGLADKVRREGLLYLENQLPQIGDAFMRKGIQLVVDGTD 120 Query: 121 PEQVRQILELEMDAKELKYEGYAKIFEAAGGYAPTMGIIGTVMGLIRVLSNLTDPSNLGA 180 PE VR+I+E EM A + ++ A IFEAAGGYAPTMGI+GTVMGL+ VLSNL P LG Sbjct: 121 PELVRRIMETEMYAIQERHHSSASIFEAAGGYAPTMGILGTVMGLVHVLSNLESPETLGP 180 Query: 181 SIAVAFTATLYGVASANLIFLPIASKIKSRSQSELGSMEMLMVGILALQNGDHPQLVRKK 240 SIA+AF ATLYGV SAN+ +LPIA K+K+ S+ E+ EM++ GI+++Q G +P L+R++ Sbjct: 181 SIALAFIATLYGVGSANVFWLPIADKLKNMSKKEIMLREMMLEGIMSIQAGYNPILIRER 240 Query: 241 LRSFLN 246 L +FL Sbjct: 241 LTAFLK 246 >C1TIL6.1 C1TIL6_9FIRM Flagellar motor component Length = 260 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/256 (43%), Positives = 162/256 (63%), Gaps = 2/256 (0%) Query: 1 MDITSIIXXXXXXXXXXXXFFWEGGSLSGLLQLNAALIVFGGTLAAVMVSFPASRLRSVP 60 MD+ +I F WEGG + L+Q AALIVFGGT A + F L+ +P Sbjct: 1 MDLAVLIGVVGGLLSLVLGFMWEGGHVGSLIQKTAALIVFGGTFGATVACFSVQDLKVIP 60 Query: 61 AALRLAFGRHADTTEEQAEELISMAAVTRRSGVLALEKRAEEHPDPFTGEGLMLIVDGTD 120 L+ A E ++++ +A RR G+L LE + + F +G+ L++DGT+ Sbjct: 61 QILKNALTVKLPEESEIIDQIVDLADQARREGLLYLEDQISSMDNEFLKKGIQLVIDGTE 120 Query: 121 PEQVRQILELEMDAKELKYEGYAKIFEAAGGYAPTMGIIGTVMGLIRVLSNLTDPSNLGA 180 E VR I+E E+ + E + E A FEAAGG+APTMGIIGTVMGL+ VL N+ DP+ LG Sbjct: 121 AELVRNIMETEIISLEERNEVGASFFEAAGGFAPTMGIIGTVMGLVHVLGNMDDPTTLGP 180 Query: 181 SIAVAFTATLYGVASANLIFLPIASKIKSRSQSELGSMEMLMVGILALQNGDHPQLVRKK 240 IAVAF ATLYGVASAN+++LP+ +KIK+ S+ E+ E++M G++ALQ G++P L+R++ Sbjct: 181 KIAVAFIATLYGVASANVLYLPLGAKIKNVSKKEVIIKELVMEGVIALQGGNNPLLIRER 240 Query: 241 LRSFLNRSAEERSTGN 256 L ++LN + +R GN Sbjct: 241 LNAYLNPN--KRPPGN 254 >Q24T21.1 Q24T21_DESHY Putative uncharacterized protein Length = 257 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 119/256 (46%), Positives = 169/256 (66%) Query: 1 MDITSIIXXXXXXXXXXXXFFWEGGSLSGLLQLNAALIVFGGTLAAVMVSFPASRLRSVP 60 MDI++++ F EGG +S L L A+IVFGGT AV SFP ++ +P Sbjct: 1 MDISTLLGIIIGFGALILGFILEGGHMSSLFLLPPAIIVFGGTFGAVFASFPLREMKKLP 60 Query: 61 AALRLAFGRHADTTEEQAEELISMAAVTRRSGVLALEKRAEEHPDPFTGEGLMLIVDGTD 120 L++AF + T E E LI A RR G+L+LE+ EE D FT +G+ L++DGTD Sbjct: 61 TWLKIAFTDKSYGTLEAYETLIRFAEKARREGLLSLEQELEEVEDRFTRQGMQLVIDGTD 120 Query: 121 PEQVRQILELEMDAKELKYEGYAKIFEAAGGYAPTMGIIGTVMGLIRVLSNLTDPSNLGA 180 P+ R+ILE + E +++ +FEAAGGY+PT+GIIGTVMGL+ VL NLTDP +L Sbjct: 121 PDITREILESNIAVMEKRHKVGISVFEAAGGYSPTLGIIGTVMGLVHVLGNLTDPDSLSK 180 Query: 181 SIAVAFTATLYGVASANLIFLPIASKIKSRSQSELGSMEMLMVGILALQNGDHPQLVRKK 240 SIA AF ATLYGVA ANL++LPIA+K+K + + E+ SMEM+M GIL++Q G++P ++++K Sbjct: 181 SIAGAFLATLYGVAFANLLYLPIATKLKQKDKIEVASMEMIMDGILSIQAGENPSILKEK 240 Query: 241 LRSFLNRSAEERSTGN 256 L++ L E ++ N Sbjct: 241 LKTHLGNIMEPANSRN 256 >Q3ADH4.1 Q3ADH4_CARHZ Chemotaxis motA protein Length = 267 Score = 214 bits (545), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 113/259 (43%), Positives = 164/259 (63%) Query: 1 MDITSIIXXXXXXXXXXXXFFWEGGSLSGLLQLNAALIVFGGTLAAVMVSFPASRLRSVP 60 M+I ++ F EGG++S L+ +AALI+FGGT+ A +++F + ++P Sbjct: 1 MEIMVVLGVVIAFTSLVTGFLMEGGTISALVAPSAALIIFGGTIGASIIAFSTEEVLAIP 60 Query: 61 AALRLAFGRHADTTEEQAEELISMAAVTRRSGVLALEKRAEEHPDPFTGEGLMLIVDGTD 120 ++ + E ++++S+A RR G+LALE D F GL LIVDGTD Sbjct: 61 KYFKIMLFQKPLNELEVVKQIVSLAQKARREGLLALENDLPNIKDDFLRRGLQLIVDGTD 120 Query: 121 PEQVRQILELEMDAKELKYEGYAKIFEAAGGYAPTMGIIGTVMGLIRVLSNLTDPSNLGA 180 PE R ILE E+ A ++ A+ FEAAGGYAPTMGIIGTVMGL+ VL L+ P LG Sbjct: 121 PELFRSILENEIYAIAERHRAGAEFFEAAGGYAPTMGIIGTVMGLVHVLGQLSTPEKLGP 180 Query: 181 SIAVAFTATLYGVASANLIFLPIASKIKSRSQSELGSMEMLMVGILALQNGDHPQLVRKK 240 +IA+AFTATLYGV+SAN+++LP ++K+K+ S+ EL EM++ G+++LQ G +P L+ +K Sbjct: 181 AIAMAFTATLYGVSSANILWLPFSAKLKNLSKKELLVREMMLEGLVSLQEGHNPMLIEEK 240 Query: 241 LRSFLNRSAEERSTGNTRG 259 LRSFL E+S +G Sbjct: 241 LRSFLKPKLREQSLREGKG 259 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,364,236,035 Number of extensions: 52742411 Number of successful extensions: 166200 Number of sequences better than 1.0e-05: 975 Number of HSP's gapped: 165833 Number of HSP's successfully gapped: 975 Length of query: 261 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 128 Effective length of database: 1,807,701,208 Effective search space: 231385754624 Effective search space used: 231385754624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)