BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0013.p (289 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7C0.1 B3K7C0_9BACI OmpA/MotB domain protein 273 2e-71 A0LT65.1 A0LT65_ACIC1 OmpA/MotB domain protein 144 7e-33 B7DSZ2.1 B7DSZ2_9BACL OmpA/MotB domain protein 132 3e-29 C1PV07.1 C1PV07_ALIAC Flagellar motor protein 132 3e-29 B2A356.1 B2A356_NATTJ OmpA/MotB domain protein 130 1e-28 >B3K7C0.1 B3K7C0_9BACI OmpA/MotB domain protein Length = 271 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 143/273 (52%), Positives = 178/273 (65%), Gaps = 18/273 (6%) Query: 15 ESRDRWMITYADXXXXXXXXXXXXYAMSSLDTQKFNIVTGALSDTFKSGNPVLEGGNGVL 74 E RDRWMITYAD YAMS LDT+K+ +VT +L TF+SG+ +LE G+G+ Sbjct: 17 EQRDRWMITYADLITLLLIFFVVMYAMSRLDTEKYKLVTQSLQATFQSGDSILEMGSGI- 75 Query: 75 DGQKGITSEGTDNGQKGEPGDAAESGMNQKQQNXXXXXXXXXXXXXXXXXXREQAFRDQE 134 + T+N + P AA+ K RE AFR QE Sbjct: 76 -----TGTADTENHKNPPPKPAADEEGEDKDNGQEPLTE------------RELAFRAQE 118 Query: 135 AKLAALMGVITKYVEDNNLGDQIFVADKPQGIAITLSDRYLFDAGRAELKAPAFPALRQL 194 +LA MG+I +YV+DN L + IF++D+PQGIAITLSDR+LFD G+AELK A P L +L Sbjct: 119 EELANFMGLIQQYVKDNQLEEDIFISDEPQGIAITLSDRFLFDVGKAELKPGAAPVLGKL 178 Query: 195 SGLFRGIGATISIEGHTDDTPVSAGSRYNDNWELSGARALSVLRFFLDNEGLSPGKFQYA 254 + LF + T+SIEGHTD+ P+ S Y DNWELSGARA+SVLRFFL++ L P FQYA Sbjct: 179 ASLFGDLNTTVSIEGHTDNVPIGRYSSYKDNWELSGARAMSVLRFFLEHSKLDPAGFQYA 238 Query: 255 GYADTRPAASNSTPEGRQKNRRVEITVLRQLQE 287 GYADTRPAA N+T EG+QKNRRVEITVLRQL+E Sbjct: 239 GYADTRPAADNATAEGKQKNRRVEITVLRQLKE 271 >A0LT65.1 A0LT65_ACIC1 OmpA/MotB domain protein Length = 290 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 88/275 (32%), Positives = 137/275 (49%), Gaps = 14/275 (5%) Query: 12 GGRESRDRWMITYADXXXXXXXXXXXXYAMSSLDTQKFNIVTGALSDTFKSGNPVLEGGN 71 G S +RW++TY D +A+S +D +KF + L+ F S VL G Sbjct: 20 GHGPSHERWLLTYTDMVTLLMVLFIVLFAISVVDKKKFAELADGLAHQFGSTPKVLPAGT 79 Query: 72 GVLDGQKGITSEGTDNGQKGEPGDAAESGMNQKQQNXXXXXXXXXXXXXXXXXXREQAFR 131 GV+DG K + D GQ D + ++ +Q+ + F Sbjct: 80 GVMDGGK---TANHDQGQLTNNPDQPIAPISDAEQSHAQPSAQASASAAANA--ERETFL 134 Query: 132 DQEAKLAALMGVITKYVEDNNLGDQIFVADKPQGIAITL-SDRYLFDAGRAELKAPAFPA 190 D E ++ A + + L D + + +G+ +++ +D+ LFD G+A+L+ Sbjct: 135 DAERRIEAAL-------QAKGLADSVKFRVETRGLIVSIVTDQVLFDTGKADLRPIGRQV 187 Query: 191 LRQLSGLFRGIGATISIEGHTDDTPVSAGSRYNDNWELSGARALSVLRFFLDNEGLSPGK 250 L ++ + RG+ IS+EGHTD+ P++ G + NWELS RA +VLR+ + N+GL + Sbjct: 188 LDAIAPVLRGLPNDISVEGHTDNVPITGGP-FASNWELSAIRATTVLRYLVSNDGLPEER 246 Query: 251 FQYAGYADTRPAASNSTPEGRQKNRRVEITVLRQL 285 GYADTRP N TPE RQ+NRRV+I VL L Sbjct: 247 MSATGYADTRPLVPNDTPEHRQQNRRVDIVVLSTL 281 >B7DSZ2.1 B7DSZ2_9BACL OmpA/MotB domain protein Length = 271 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/283 (30%), Positives = 141/283 (49%), Gaps = 30/283 (10%) Query: 6 RRKPRAGGRESRDRWMITYADXXXXXXXXXXXXYAMSSLDTQKFNIVTGALSDTFKSGN- 64 R+KP+ +++ +RW++TY+D +AMS++D +F + +L G Sbjct: 4 RKKPK--HKQNHERWLVTYSDLITLLLVFFVVMFAMSTIDKTRFATLAESLYQALHPGQQ 61 Query: 65 -PVLEGGNGVLD-GQKGITSEGTDNGQKGEPGDAAESGMNQKQQNXXXXXXXXXXXXXXX 122 P+ G +L+ G + + DN Q P + + + +Q N Sbjct: 62 IPLNMGTTALLESGDQNNGQQFPDNLQN--PNNPSNATTQNQQSN--------------- 104 Query: 123 XXXREQAFRDQEAKLAALMGVITKYVEDNNLGDQIFVADKPQGIAITLSDRYLFDAGRAE 182 + D + +L L I +Y+ ++L ++ V D+ +G+ IT+ D LF+ G+A Sbjct: 105 -----EDLTDAK-QLDLLYREIQQYIASHHLSGEVQVIDEARGVQITMRDVALFNTGQAV 158 Query: 183 LKAPAFPALRQLSGLFRGIGATISIEGHTDDTPVSAGSRYNDNWELSGARALSVLRFFLD 242 L A + L F+ I I +EG+TD P++ Y NWELS ARA+SV+RF D Sbjct: 159 LLPKAKAIIEGLIPFFKQISNDIVVEGYTDTQPINT-PIYPSNWELSAARAMSVVRFLAD 217 Query: 243 NEGLSPGKFQYAGYADTRPAASNSTPEGRQKNRRVEITVLRQL 285 + G++P + GY P ASN+TP GRQ NRRV I +LR++ Sbjct: 218 H-GINPTRLAGMGYGQYHPVASNATPAGRQANRRVNIVILRKI 259 >C1PV07.1 C1PV07_ALIAC Flagellar motor protein Length = 271 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/283 (30%), Positives = 141/283 (49%), Gaps = 30/283 (10%) Query: 6 RRKPRAGGRESRDRWMITYADXXXXXXXXXXXXYAMSSLDTQKFNIVTGALSDTFKSGN- 64 R+KP+ +++ +RW++TY+D +AMS++D +F + +L G Sbjct: 4 RKKPK--HKQNHERWLVTYSDLITLLLVFFVVMFAMSTIDKTRFATLAESLYQALHPGQQ 61 Query: 65 -PVLEGGNGVLD-GQKGITSEGTDNGQKGEPGDAAESGMNQKQQNXXXXXXXXXXXXXXX 122 P+ G +L+ G + + DN Q P + + + +Q N Sbjct: 62 IPLNMGTTALLESGDQNNGQQFPDNLQN--PNNPSNATTQNQQSN--------------- 104 Query: 123 XXXREQAFRDQEAKLAALMGVITKYVEDNNLGDQIFVADKPQGIAITLSDRYLFDAGRAE 182 + D + +L L I +Y+ ++L ++ V D+ +G+ IT+ D LF+ G+A Sbjct: 105 -----EDLTDAK-QLDLLYREIQQYIASHHLSGEVQVIDEARGVQITMRDVALFNTGQAV 158 Query: 183 LKAPAFPALRQLSGLFRGIGATISIEGHTDDTPVSAGSRYNDNWELSGARALSVLRFFLD 242 L A + L F+ I I +EG+TD P++ Y NWELS ARA+SV+RF D Sbjct: 159 LLPKAKAIIEGLIPFFKQISNDIVVEGYTDTQPINT-PIYPSNWELSAARAMSVVRFLAD 217 Query: 243 NEGLSPGKFQYAGYADTRPAASNSTPEGRQKNRRVEITVLRQL 285 + G++P + GY P ASN+TP GRQ NRRV I +LR++ Sbjct: 218 H-GINPTRLAGMGYGQYHPVASNATPAGRQANRRVNIVILRKI 259 >B2A356.1 B2A356_NATTJ OmpA/MotB domain protein Length = 269 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 123/269 (45%), Gaps = 42/269 (15%) Query: 20 WMITYADXXXXXXXXXXXXYAMSSLDTQKFNIVTGALSDTFKSGNPVLEGGNGVLDGQKG 79 W+ TY D Y++S++D +KF + +L ++F +GVL + Sbjct: 23 WLQTYGDMITLLLAFFVLLYSISTVDAEKFERMLVSLHESF----------SGVLPEHRA 72 Query: 80 ITSEGTDNGQKGEPGDAAESGMNQKQQNXXXXXXXXXXXXXXXXXXREQAFRDQEAKLAA 139 N EP + Q ++E + Sbjct: 73 QIPREDPNITLPEPSE-------------------------------RQVPSEEEQMMED 101 Query: 140 LMGVITKYVEDNNLGDQIFVADKPQGIAITLSDRYLFDAGRAELKAPAFPALRQLSGLFR 199 + + Y+ED +L + + + + +GI I D+ LFD+GRAEL++ + L ++ + Sbjct: 102 IYDQLEDYIEDADLAEVVMLETEERGIVIRFQDKILFDSGRAELRSESLEILGDIAEILE 161 Query: 200 GIGATISIEGHTDDTPVSAGSRYNDNWELSGARALSVLRFFLDNEGLSPGKFQYAGYADT 259 I I +EG TDD P+ + NWELS ARA +VLR+ + GL PG+ Q GY + Sbjct: 162 EIPNEIKVEGFTDDVPIDT-PEFPSNWELSAARATTVLRYLSEEGGLDPGRLQATGYGEY 220 Query: 260 RPAASNSTPEGRQKNRRVEITVLRQLQEE 288 RP N +PE RQ NRRV+ITVL + E+ Sbjct: 221 RPMVPNDSPENRQLNRRVDITVLWSVWEQ 249 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.132 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,603,890,547 Number of extensions: 63710507 Number of successful extensions: 127000 Number of sequences better than 1.0e-05: 2024 Number of HSP's gapped: 126575 Number of HSP's successfully gapped: 2029 Length of query: 289 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 155 Effective length of database: 1,798,280,193 Effective search space: 278733429915 Effective search space used: 278733429915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)