BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0012.p
         (130 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KCW9.1 B3KCW9_9BACI Glycine cleavage system H protein               165   1e-39
B1YKZ7.1 B1YKZ7_EXIS2 Glycine cleavage system H protein               139   8e-32
C1KY63.1 C1KY63_LISMC Putative glycine cleavage system protein H      132   1e-29
Q4EHV5.1 Q4EHV5_LISMO Glycine cleavage system H protein               132   1e-29
Q71X03.1 GCSH_LISMF Glycine cleavage system H protein                 132   1e-29

>B3KCW9.1 B3KCW9_9BACI Glycine cleavage system H protein
          Length = 129

 Score =  165 bits (418), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 97/125 (77%)

Query: 1   MSEVLDNLLYSEEHEWAQQGEGRVVRIGITDHAQHLLGDIVFVEFPEVGAAISAGDSVGS 60
           MSE+ +NL+YS++HEWA + +G VVR+GI+DHAQ  LGDIVFVE PE GAA++AGDS+G+
Sbjct: 1   MSEIRENLVYSDDHEWALRVDGNVVRVGISDHAQCQLGDIVFVELPETGAAVAAGDSIGT 60

Query: 61  IESVKTVSELYSPVSGTVTKINDTLEASPELINDQPYSGGWIFELEISGEFXXXXXXXXX 120
           IESVKTVSELYSPVSGT+TK+N +LE  PEL+N +PY GGWI E+E+ G+          
Sbjct: 61  IESVKTVSELYSPVSGTITKVNTSLEDQPELVNGEPYEGGWIMEVEVEGDLDEALGKLLT 120

Query: 121 XXXYR 125
              YR
Sbjct: 121 ADAYR 125


>B1YKZ7.1 B1YKZ7_EXIS2 Glycine cleavage system H protein
          Length = 127

 Score =  139 bits (350), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 83/110 (75%), Gaps = 1/110 (0%)

Query: 1   MSEVLDNLLYSEEHEWAQQGEGRVVRIGITDHAQHLLGDIVFVEFPEVGAAISAGDSVGS 60
           MS+V DNL YSEEHEW +   G   RIGITD AQH LGDIVFVE PEVG  ISA +  GS
Sbjct: 1   MSQVKDNLRYSEEHEWVEVT-GNKARIGITDFAQHELGDIVFVELPEVGDTISANEPFGS 59

Query: 61  IESVKTVSELYSPVSGTVTKINDTLEASPELINDQPYSGGWIFELEISGE 110
           +ESVKTVSELY+P+SG V  IN++L  SPEL+N+ P+ G W+ ++EI+ E
Sbjct: 60  VESVKTVSELYAPISGKVVAINESLSDSPELVNESPFEGAWMVDIEIADE 109


>C1KY63.1 C1KY63_LISMC Putative glycine cleavage system protein H
          Length = 125

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 76/100 (76%), Gaps = 1/100 (1%)

Query: 7   NLLYSEEHEWAQQGEGRVVRIGITDHAQHLLGDIVFVEFPEVGAAISAGDSVGSIESVKT 66
           +LLY+EEHEW +  EG  V IGITD AQ  LGDIVFVE PEVG  ++ GDS+GSIESVKT
Sbjct: 6   DLLYTEEHEWVKADEGSYV-IGITDFAQDQLGDIVFVELPEVGDTVAKGDSIGSIESVKT 64

Query: 67  VSELYSPVSGTVTKINDTLEASPELINDQPYSGGWIFELE 106
           VS+ Y+PV+G V  +N+TLE  PELIN  PY  GWI +LE
Sbjct: 65  VSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLE 104


>Q4EHV5.1 Q4EHV5_LISMO Glycine cleavage system H protein
          Length = 125

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 76/100 (76%), Gaps = 1/100 (1%)

Query: 7   NLLYSEEHEWAQQGEGRVVRIGITDHAQHLLGDIVFVEFPEVGAAISAGDSVGSIESVKT 66
           +LLY+EEHEW +  EG  V IGITD AQ  LGDIVFVE PEVG  ++ GDS+GSIESVKT
Sbjct: 6   DLLYTEEHEWVKADEGSYV-IGITDFAQDQLGDIVFVELPEVGDTVAKGDSIGSIESVKT 64

Query: 67  VSELYSPVSGTVTKINDTLEASPELINDQPYSGGWIFELE 106
           VS+ Y+PV+G V  +N+TLE  PELIN  PY  GWI +LE
Sbjct: 65  VSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLE 104


>Q71X03.1 GCSH_LISMF Glycine cleavage system H protein
          Length = 125

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 76/100 (76%), Gaps = 1/100 (1%)

Query: 7   NLLYSEEHEWAQQGEGRVVRIGITDHAQHLLGDIVFVEFPEVGAAISAGDSVGSIESVKT 66
           +LLY+EEHEW +  EG  V IGITD AQ  LGDIVFVE PEVG  ++ GDS+GSIESVKT
Sbjct: 6   DLLYTEEHEWVKADEGSYV-IGITDFAQDQLGDIVFVELPEVGDTVAKGDSIGSIESVKT 64

Query: 67  VSELYSPVSGTVTKINDTLEASPELINDQPYSGGWIFELE 106
           VS+ Y+PV+G V  +N+TLE  PELIN  PY  GWI +LE
Sbjct: 65  VSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLE 104


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 711,904,497
Number of extensions: 25212036
Number of successful extensions: 54911
Number of sequences better than 1.0e-05: 1538
Number of HSP's gapped: 54412
Number of HSP's successfully gapped: 1538
Length of query: 130
Length of database: 3,060,696,203
Length adjustment: 95
Effective length of query: 35
Effective length of database: 2,165,699,778
Effective search space: 75799492230
Effective search space used: 75799492230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)