BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0007.p (986 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DHS6.1 B1DHS6_9BACL Acriflavin resistance protein 986 0.0 Q63FS7.1 Q63FS7_BACCZ Acriflavin resistance protein 583 e-164 Q6HN96.1 Q6HN96_BACHK Acriflavin resistance protein 583 e-164 B3ZG04.1 B3ZG04_BACCE Transporter, AcrB/AcrD/AcrF family 581 e-163 Q81UY7.1 Q81UY7_BACAN Transporter, AcrB/AcrD/AcrF family 581 e-163 >B1DHS6.1 B1DHS6_9BACL Acriflavin resistance protein Length = 1005 Score = 986 bits (2549), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/964 (51%), Positives = 647/964 (67%), Gaps = 1/964 (0%) Query: 15 SYTSLPMEFMPEADNPQVTVTVLGPGQDAHSMEANVTKPIEAATSAVKGKTEQMSTSGDG 74 SY LPMEF+PEADNPQV VTV+GPG DA SME VT P+E A KGKT+ STSG+G Sbjct: 29 SYLKLPMEFLPEADNPQVMVTVIGPGMDAKSMEQQVTSPLEEAVMFTKGKTDMFSTSGNG 88 Query: 75 YAKVDIYFDGKTDMKDAAQEVEKAVGALHFPEGVMDPFIVQLNTSMIPISQLTVSFDEGI 134 YA+V++ FD T+MK+A E+E++V + P+GVM PF+VQ NTSMIPIS + V+FDEG+ Sbjct: 89 YAQVNVNFDSNTNMKEAKAEIERSVDQVQLPQGVMKPFVVQFNTSMIPISWIVVTFDEGL 148 Query: 135 TKDNLKLAEETILPELQKIDGVANVALYGKTAPQVNVKLNPQAMAAKGIATAQVLGLLQG 194 ++ + + ELQK +G +++ GK+ P +++ + +A KG+ +L +LQG Sbjct: 149 SEQEKDAKIKLVNTELQKSEGAGQISVNGKSTPSIHITPDTDKLAQKGLPVQSLLSVLQG 208 Query: 195 RSVSASIGEQTIGGQTGNVNVVSSIDSIDTLKKLPVAPGVTLQDIAAVEAVTDQESVSRS 254 R VSASIGE+ + G GN+NV + SIDTL+ LPVAPGV L ++A VE +QES+SR Sbjct: 209 RGVSASIGERNVDGAAGNINVYDEVTSIDTLRDLPVAPGVKLSEVATVEQAKEQESISRM 268 Query: 255 NGKDVLFAVITKEANANAVDVGGKVRDVAKDLTASVKNAEVAVIFSTSDMVVTSVNSMMR 314 NGKD + ++K ANANAV G V + L VK E V+ ST++ V SVNSM+R Sbjct: 269 NGKDAILFTVSKSANANAVTTGKNVEKTVEHLNKDVKGVEAVVLLSTAESVTHSVNSMLR 328 Query: 315 EVLLGALFATLVILVFLRNVRATLITAVSIPLSLAVTLYLLDVSGITLNIVTLXXXXXXX 374 EVL+GALFAT++IL+F+RN+RATL+T VSIPLSL +TLYLLD+SG+TLNI+TL Sbjct: 329 EVLMGALFATIIILLFMRNLRATLVTIVSIPLSLGITLYLLDLSGVTLNIITLGGVAVAV 388 Query: 375 XRLVDDSIVVIENIHRRMQKEPFSIHMIISATREXXXXXXXXXXXXXXXFLPMGLLNGSL 434 RLVDDSIVVIENI+RR+QKEPFS+ +I AT+E FLPMGLL GSL Sbjct: 389 GRLVDDSIVVIENIYRRLQKEPFSVTVITDATKEVATAITSSTLVTVAVFLPMGLLRGSL 448 Query: 435 QAFLLPFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEHEPSRRFGHFLEWNLRHKW 494 QAFLLPFA K H+ S +F F+ WNL+HKW Sbjct: 449 QAFLLPFALTVAYSLLSSLLVALTVVPLLSAILLRGTKEKPHKGSEKFASFIRWNLQHKW 508 Query: 495 IXXXXXXXXXXXSVAAYVTMPKGALDASNASNVTVQLVYPNDVPVKEVLEKGKQLEAELM 554 + S+A+Y MPKGALD+S+A N+ + L YP+D P ++V + G QLE L Sbjct: 509 VTLLIALILFLGSIASYAMMPKGALDSSSAENLNISLQYPSDTPSEKVEQGGAQLENFLK 568 Query: 555 KQPQAETVIMMTGNSADSAQWGSVTSLTQVDYTVMMKKDADAQVFLDQVRGWQKSYAGAT 614 E VIM GNS+++AQ+GSV+S T V Y V +KK DA+VF+++V+ + +++ A Sbjct: 569 DDKNVEWVIMQLGNSSENAQYGSVSSPTLVTYMVDLKKGVDAEVFMEEVKKQKTNFSDAE 628 Query: 615 LTANEXXXXXXXXTSE-YVDIVGDDLKSINSXXXXXXXXXXXXDGVQKVTSNMEDTKPVF 673 L+ N S+ +VD+ GDD + + GV KV SN E+ KPV+ Sbjct: 629 LSVNATDLMMGGGGSQVFVDVTGDDPEKLTQTADQLIAAIKPIKGVLKVQSNQEEKKPVY 688 Query: 674 AFKVNPVAANAQEISMQLAAMLNPVPLGQIELDGSPAGVVLEPVLQPKGQKDLENITIMT 733 F+V+P A QEISMQL ++LNPVP+G I++DG VV++PV+ P + L+++TI T Sbjct: 689 TFQVDPEKAKGQEISMQLQSILNPVPVGSIKVDGRDTSVVVQPVVNPDTEAALKDLTIAT 748 Query: 734 AGGPQPLSTLAALEVTDQPAMLYHKDGKPYVRITAEVDPKKVSAIGADIQKQTDRITLPA 793 G P+S++A L T++P++ YHK+GK YVRITA+ DP+K+S +G DI+K D++ LP Sbjct: 749 ESGVVPVSSVAKLVRTEEPSLYYHKEGKVYVRITADADPQKLSVVGTDIKKAADKLNLPD 808 Query: 794 GVTLFAGGASADQAGDFNDLGMTALISIGLVYLIMVLTFKTLRAPLAIMFSLPXXXXXXX 853 GV L GGASADQ+ DF D+GMTALISIG+VYLIMVLTFKTLRAPLAIMFSLP Sbjct: 809 GVELKVGGASADQSSDFADIGMTALISIGIVYLIMVLTFKTLRAPLAIMFSLPLAAIGAV 868 Query: 854 XXXXXXXXTPDFTALFGALMLIGIVVTNAIVLIDRIKQNEEHMSVRESIIEAARTRLRPI 913 TPDFTA+FGALMLIGIVVTNAIVLIDR+KQNEE MS+R++++EAA TR+RPI Sbjct: 869 VGLLISGVTPDFTAMFGALMLIGIVVTNAIVLIDRVKQNEETMSIRDALVEAATTRMRPI 928 Query: 914 LMTAIATICAMLPLLFGHSEQGSIVSQSLAIVVIGGXXXXXXXXXXXXXXIYELLYFRKS 973 +MTA+ATI AMLPL+FG SE GSIVSQSLAIVVIGG +YELL+FR S Sbjct: 929 IMTAVATISAMLPLVFGSSESGSIVSQSLAIVVIGGLAAATLLTLIVVPCMYELLFFRAS 988 Query: 974 AKER 977 K+R Sbjct: 989 RKQR 992 >Q63FS7.1 Q63FS7_BACCZ Acriflavin resistance protein Length = 1014 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 345/964 (35%), Positives = 527/964 (54%), Gaps = 10/964 (1%) Query: 15 SYTSLPMEFMPEADNPQVTVTVLGPGQDAHSMEANVTKPIEAATSAVKGKTEQMSTSGDG 74 S + LPMEF+P DNP VTVT L PG DA +M VT P+E ++ S++ +G Sbjct: 29 SGSKLPMEFLPSIDNPAVTVTTLSPGLDAEAMTKEVTDPLEKQFRNLEHIDNITSSTHEG 88 Query: 75 YAKVDIYFDGKTDMKDAAQEVEKAVGALHFPEGVMDPFIVQLNTSMIPISQLTVSFDEGI 134 +++DI + K +MKDA +EVEKA+ + P+ P + QLNTSMIP++Q+ + G Sbjct: 89 LSRIDIAYTSKANMKDATREVEKAINTIKLPKDATKPIVSQLNTSMIPLAQIAIQKQNGF 148 Query: 135 TKDNLKLAEETILPELQKIDGVANVALYGKTAPQVNVKLNPQAMAAKGIATAQVLGLLQG 194 +K + K E+ I+P+L+ IDGVANV +GK+ ++++ L+P + K I Q+L +LQG Sbjct: 149 SKADEKQIEKEIVPQLESIDGVANVMFFGKSTSELSIILDPNQLKDKNITAEQILKVLQG 208 Query: 195 RSVSASIGEQTIGGQTGNVNVVSSIDSIDTLKKLPVAPGVTLQDIAAVEAVTDQESVSRS 254 + S G T+ + N+ ++ I ++D +K + VAP V LQD+A +E +++S Sbjct: 209 KETSTPAGAVTVNKEEYNLRIIGDIKNVDDIKHITVAPQVKLQDVAQIELKQHYDTISHI 268 Query: 255 NGKDVLFAVITKEANANAVDVGGKVRDVAKDLTASVKNA-EVAVIFSTSDMVVTSVNSMM 313 NG++ +I KE + NAV +G ++ KD++ K+ + ++ ST + V +V SM Sbjct: 269 NGEEGTGLIIMKEPSKNAVAIGKEIDKKIKDISKQYKDQFSIKLLASTHEQVENAVTSMG 328 Query: 314 REVLLGALFATLVILVFLRNVRATLITAVSIPLSLAVTLYLLDVSGITLNIVTLXXXXXX 373 +EV+LGA+ ATL+IL+FLRN R TLI VSIPLS+ +TL+LL S ITLN +TL Sbjct: 329 KEVILGAIAATLIILIFLRNFRTTLIAVVSIPLSILLTLFLLHQSNITLNTLTLGGLAVA 388 Query: 374 XXRLVDDSIVVIENIHRRMQKEPFSIHMIISATREXXXXXXXXXXXXXXXFLPMGLLNGS 433 RLVDDSIVVIENI RR+QKEPFS +I+ AT+E FLP+GL++G Sbjct: 389 VGRLVDDSIVVIENIFRRLQKEPFSKDIILDATKEVAVAITSSTLTTVAVFLPIGLVSGV 448 Query: 434 LQAFLLPFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEHEPSRRFGHFLEWNLRHK 493 + +LP K+ S R+ L+W L HK Sbjct: 449 IGKLMLPMVLAVVYSILSSLIVALTVVPLMAFLLLKKTKHKKPSSSPRYVATLKWALSHK 508 Query: 494 WIXXXXXXXXXXXSVAAYVTMPKGALDASNASNVTVQLVYPNDVPVKEVLEKGKQLEAEL 553 +I S+AAYV +PK + + + + +++ + +P D + +K E +L Sbjct: 509 FIILLTSFLLFAGSIAAYVLLPKANIKSEDDTMLSINMTFPADYAPETQKQKAFDFEKKL 568 Query: 554 MKQPQAETVIMMTGNSADSAQWGSVTSLTQVDYTVMMKKDADAQVFLDQVRGWQKSYAGA 613 + VI+ G+SA+ AQWG T V+ KK +D ++ +++ K++ A Sbjct: 569 LSNSDVTDVILRMGSSAEDAQWGQTTKNNLASILVVFKKGSDIDQYIKELKKEHKTFEPA 628 Query: 614 TLTANEXXXXXXXXTSEY-VDIVGDDLKSINSXXXXXXXXXXXXDGVQKVTSNMEDTKPV 672 L + + ++ + ++ D + KV +N+ED+K Sbjct: 629 ELDYIKMSYSSSGGGNNLQFNVTATNETNLKEAATIVETKLKDMDDLSKVKTNLEDSKKE 688 Query: 673 FAFKVNPVAANAQEISMQLAA-----MLNPVPLGQIELDGSPAGVVLEPVLQP-KGQKDL 726 + V+ A ++ +LAA ++ P+G++ ++ +++E + Q+D+ Sbjct: 689 WQIHVDQTKAEQLGLTPELAAQQVAFLMKKSPIGEVSINNEKTTIMIEHKKESITKQEDI 748 Query: 727 ENITIMT-AGGPQPLSTLAALEVTDQPAMLYHKDGKPYVRITAEVDPKKVSAIGADIQKQ 785 N I++ GP PL +A + ++HKDGK ++ITAE + +S + A++ K Sbjct: 749 LNTNILSPINGPIPLKDIATISEKQLQTEIFHKDGKETIQITAEASNEDLSKVSAEVNKA 808 Query: 786 TDRITLPAGVTLFAGGASADQAGDFNDLGMTALISIGLVYLIMVLTFKTLRAPLAIMFSL 845 + LP+G + GA+ +F DL I+IG+VYLIMV+TF RAP AI+FSL Sbjct: 809 IADLDLPSGAKVNIAGATESMQENFTDLFKIMGIAIGIVYLIMVITFGQARAPFAILFSL 868 Query: 846 PXXXXXXXXXXXXXXXTPDFTALFGALMLIGIVVTNAIVLIDRIKQNEEH-MSVRESIIE 904 P D +L GALMLIGIVVTNAIVLI+R++QN EH M RE+++E Sbjct: 869 PLAAVGGILGLIISGTPVDVNSLIGALMLIGIVVTNAIVLIERVQQNREHGMETREALLE 928 Query: 905 AARTRLRPILMTAIATICAMLPLLFGHSEQGSIVSQSLAIVVIGGXXXXXXXXXXXXXXI 964 A TRLRPI+MTAI TI AMLPLLFG S+ GS+VS+SLA+VVIGG + Sbjct: 929 AGSTRLRPIIMTAITTIVAMLPLLFGQSQAGSMVSKSLAVVVIGGLAVSTVLTLVVVPVM 988 Query: 965 YELL 968 YELL Sbjct: 989 YELL 992 >Q6HN96.1 Q6HN96_BACHK Acriflavin resistance protein Length = 1014 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 347/977 (35%), Positives = 533/977 (54%), Gaps = 11/977 (1%) Query: 15 SYTSLPMEFMPEADNPQVTVTVLGPGQDAHSMEANVTKPIEAATSAVKGKTEQMSTSGDG 74 S + LPMEF+P DNP VTVT L PG DA +M VT P+E ++ S++ +G Sbjct: 29 SGSKLPMEFLPSIDNPAVTVTTLSPGLDAEAMTKEVTDPLEKQFRNLEYIDNITSSTHEG 88 Query: 75 YAKVDIYFDGKTDMKDAAQEVEKAVGALHFPEGVMDPFIVQLNTSMIPISQLTVSFDEGI 134 +++DI + K +MKDA +EVEKA+ + P+ P + QLNTSMIP++Q+ + G Sbjct: 89 LSRIDIAYTSKANMKDATREVEKAINTIKLPKDATKPIVSQLNTSMIPLAQIAIQKQNGF 148 Query: 135 TKDNLKLAEETILPELQKIDGVANVALYGKTAPQVNVKLNPQAMAAKGIATAQVLGLLQG 194 +K + K E+ I+P+L+ IDGVANV +GK+ ++++ L+P + K + T Q+L +LQG Sbjct: 149 SKADEKQIEKEIVPQLESIDGVANVMFFGKSTSELSIILDPNQLKDKNVTTEQILKVLQG 208 Query: 195 RSVSASIGEQTIGGQTGNVNVVSSIDSIDTLKKLPVAPGVTLQDIAAVEAVTDQESVSRS 254 + S G T+ + N+ V+ I ++D +K + VAP V LQD+A +E +++S Sbjct: 209 KETSTPAGAVTVNKEEYNLRVIGDIKNVDDIKNITVAPQVKLQDVAQIELKQHYDTISHI 268 Query: 255 NGKDVLFAVITKEANANAVDVGGKVRDVAKDLTASVKNA-EVAVIFSTSDMVVTSVNSMM 313 NG++ +I KE + NAV +G ++ KD++ K+ + ++ ST + V +V SM Sbjct: 269 NGEEGTGLIIMKEPSKNAVAIGKEIDKKIKDISKQYKDQFSIKLLASTHEQVENAVTSMG 328 Query: 314 REVLLGALFATLVILVFLRNVRATLITAVSIPLSLAVTLYLLDVSGITLNIVTLXXXXXX 373 +EV+LGA+ ATL+IL+FLRN R TLI VSIPLS+ +TL+LL S ITLN +TL Sbjct: 329 KEVILGAIAATLIILIFLRNFRTTLIAVVSIPLSILLTLFLLHQSNITLNTLTLGGLAVA 388 Query: 374 XXRLVDDSIVVIENIHRRMQKEPFSIHMIISATREXXXXXXXXXXXXXXXFLPMGLLNGS 433 RLVDDSIVVIENI RR+QKE FS +I+ AT+E FLP+GL++G Sbjct: 389 VGRLVDDSIVVIENIFRRLQKESFSKDIILDATKEVAVAITSSTLTTVAVFLPIGLVSGV 448 Query: 434 LQAFLLPFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEHEPSRRFGHFLEWNLRHK 493 + +LP K+ S R+ L+W L HK Sbjct: 449 IGKLMLPMVLAVVYSILSSLIVALTIVPLMAFLLLKKIKHKKPSSSPRYVATLKWALSHK 508 Query: 494 WIXXXXXXXXXXXSVAAYVTMPKGALDASNASNVTVQLVYPNDVPVKEVLEKGKQLEAEL 553 +I S+AAYV +PK + + + + +++ + +P D ++ +K E +L Sbjct: 509 FIILLTSFLLFAGSIAAYVLLPKANIKSEDDTMLSINMTFPADYALETQKQKAFDFEKKL 568 Query: 554 MKQPQAETVIMMTGNSADSAQWGSVTSLTQVDYTVMMKKDADAQVFLDQVRGWQKSYAGA 613 + VI+ G+SA+ AQWG T V+ KK +D ++ +++ ++ A Sbjct: 569 LSNSDVTDVILRMGSSAEDAQWGQTTKNNLASIFVVFKKGSDIDQYIKELKKEHNAFEPA 628 Query: 614 TLTANEXXXXXXXXTSEY-VDIVGDDLKSINSXXXXXXXXXXXXDGVQKVTSNMEDTKPV 672 L + + ++ + ++ D + KV +N+ED+K Sbjct: 629 ELDYIKTSYSSSGGGNNLQFNVTATNETNLKKAATIVETKLKNMDDLSKVKTNLEDSKKE 688 Query: 673 FAFKVNPVAANAQEISMQLAA-----MLNPVPLGQIELDGSPAGVVLEPVLQP-KGQKDL 726 + V+ A ++ +LAA ++ P+G++ ++ +++E + Q+D+ Sbjct: 689 WQIHVDQTKAEQLGLTPELAAQQVAFLMKKSPIGEVSINNEKTTIMIEHKKESITKQEDI 748 Query: 727 ENITIMT-AGGPQPLSTLAALEVTDQPAMLYHKDGKPYVRITAEVDPKKVSAIGADIQKQ 785 N I++ GP PL +A + ++HKDGK ++ITAE + +S + A++ K Sbjct: 749 LNTNILSPINGPIPLKDIATISEKQLQTEVFHKDGKETIQITAEASNEDLSKVSAEVNKA 808 Query: 786 TDRITLPAGVTLFAGGASADQAGDFNDLGMTALISIGLVYLIMVLTFKTLRAPLAIMFSL 845 + LP+G + GA+ +F DL I+IG+VYLIMV+TF RAP AI+FSL Sbjct: 809 ITDLDLPSGAKVNIAGATESMQENFTDLFKIMGIAIGIVYLIMVITFGQARAPFAILFSL 868 Query: 846 PXXXXXXXXXXXXXXXTPDFTALFGALMLIGIVVTNAIVLIDRIKQNEEH-MSVRESIIE 904 P D +L GALMLIGIVVTNAIVLI+R++QN EH M RE+++E Sbjct: 869 PLAAVGGILGLIISGTPVDVNSLIGALMLIGIVVTNAIVLIERVQQNREHGMETREALLE 928 Query: 905 AARTRLRPILMTAIATICAMLPLLFGHSEQGSIVSQSLAIVVIGGXXXXXXXXXXXXXXI 964 A TRLRPI+MTAI TI AMLPLLFG S+ GS+VS+SLA+VVIGG + Sbjct: 929 AGSTRLRPIIMTAITTIVAMLPLLFGQSQAGSMVSKSLAVVVIGGLAVSTVLTLVVVPVM 988 Query: 965 YELLYFRKSAKERTQEK 981 YELL + K R++ K Sbjct: 989 YELLD-KIGRKRRSRRK 1004 >B3ZG04.1 B3ZG04_BACCE Transporter, AcrB/AcrD/AcrF family Length = 1014 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 347/977 (35%), Positives = 532/977 (54%), Gaps = 11/977 (1%) Query: 15 SYTSLPMEFMPEADNPQVTVTVLGPGQDAHSMEANVTKPIEAATSAVKGKTEQMSTSGDG 74 S + LPMEF+P DNP VTVT L PG DA +M VT P+E ++ S++ +G Sbjct: 29 SGSKLPMEFLPSIDNPAVTVTTLSPGLDAEAMTKEVTDPLEKQFRNLEHIDNITSSTHEG 88 Query: 75 YAKVDIYFDGKTDMKDAAQEVEKAVGALHFPEGVMDPFIVQLNTSMIPISQLTVSFDEGI 134 +++DI + K +MKDA +EVEKA+ + P+ P + QLNTSMIP++Q+ + G Sbjct: 89 LSRIDIAYTSKANMKDATREVEKAINTIKLPKDATKPIVSQLNTSMIPLAQIAIQKQNGF 148 Query: 135 TKDNLKLAEETILPELQKIDGVANVALYGKTAPQVNVKLNPQAMAAKGIATAQVLGLLQG 194 +K + K E+ I+P+L+ IDGVANV +GK+ ++++ L+P + K + T Q+L +LQG Sbjct: 149 SKADEKQIEKEIVPQLESIDGVANVMFFGKSTSELSIILDPNQLKDKNVTTEQILKVLQG 208 Query: 195 RSVSASIGEQTIGGQTGNVNVVSSIDSIDTLKKLPVAPGVTLQDIAAVEAVTDQESVSRS 254 + S G T+ + N+ V+ I ++D +K + VAP V LQD+A +E +++S Sbjct: 209 KETSTPAGAVTVNKEEYNLRVIGDIKNVDDIKNITVAPQVKLQDVAQIELKQHYDTISHI 268 Query: 255 NGKDVLFAVITKEANANAVDVGGKVRDVAKDLTASVKNA-EVAVIFSTSDMVVTSVNSMM 313 NG++ +I KE + NAV +G ++ KD++ K+ + ++ ST + V +V SM Sbjct: 269 NGEEGTGLIIMKEPSKNAVAIGKEIDKKIKDISKQYKDQFSIKLLASTHEQVENAVTSMG 328 Query: 314 REVLLGALFATLVILVFLRNVRATLITAVSIPLSLAVTLYLLDVSGITLNIVTLXXXXXX 373 +EV+LGA+ ATL+IL+FLRN R TLI VSIPLS+ +TL+LL S ITLN +TL Sbjct: 329 KEVILGAIAATLIILIFLRNFRTTLIAVVSIPLSILLTLFLLHQSNITLNTLTLGGLAVA 388 Query: 374 XXRLVDDSIVVIENIHRRMQKEPFSIHMIISATREXXXXXXXXXXXXXXXFLPMGLLNGS 433 RLVDDSIVVIENI RR+QKE FS +I+ AT+E FLP+GL++G Sbjct: 389 VGRLVDDSIVVIENIFRRLQKESFSKDIILDATKEVAVAITSSTLTTVAVFLPIGLVSGV 448 Query: 434 LQAFLLPFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEHEPSRRFGHFLEWNLRHK 493 + +LP K+ S R+ L+W L HK Sbjct: 449 IGKLMLPMVLAVVYSILSSLIVALTVVPLMAFLLLKKIKHKKPSSSPRYVATLKWALSHK 508 Query: 494 WIXXXXXXXXXXXSVAAYVTMPKGALDASNASNVTVQLVYPNDVPVKEVLEKGKQLEAEL 553 +I S+AAYV +PK + + + + +++ + +P D ++ +K E +L Sbjct: 509 FIILLTSFLLFAGSIAAYVLLPKANIKSEDDTMLSINMTFPADYALETQKQKAFDFEKKL 568 Query: 554 MKQPQAETVIMMTGNSADSAQWGSVTSLTQVDYTVMMKKDADAQVFLDQVRGWQKSYAGA 613 VI+ G+SA+ AQWG T V+ KK +D ++ +++ K++ A Sbjct: 569 FSNSDVMDVILRMGSSAEDAQWGQTTKNNLASIFVVFKKGSDIDQYIKELKKEHKTFEPA 628 Query: 614 TLTANEXXXXXXXXTSEY-VDIVGDDLKSINSXXXXXXXXXXXXDGVQKVTSNMEDTKPV 672 L + + ++ + ++ D + KV +N+ED+K Sbjct: 629 ELDYIKTSYSSSGGDNNLQFNVTATNETNLKKAATIVETKLKNMDDLSKVKTNLEDSKNE 688 Query: 673 FAFKVNPVAANAQEISMQLAA-----MLNPVPLGQIELDGSPAGVVLEPVLQP-KGQKDL 726 + V+ A ++ +LAA ++ P+G++ ++ +++E + Q+D+ Sbjct: 689 WQIHVDQTKAEQLGLTPELAAQQVAFLMKKSPIGEVSINNEKTTIMIEHKKKSITKQEDI 748 Query: 727 ENITIMT-AGGPQPLSTLAALEVTDQPAMLYHKDGKPYVRITAEVDPKKVSAIGADIQKQ 785 N I++ GP PL +A + ++HKDGK ++ITAE + +S + ++ K Sbjct: 749 LNTNILSPINGPIPLKDIATISEKQLQTEVFHKDGKETIQITAEASNEDLSKVSTEVNKA 808 Query: 786 TDRITLPAGVTLFAGGASADQAGDFNDLGMTALISIGLVYLIMVLTFKTLRAPLAIMFSL 845 + LP+G + GA+ +F DL I+IG+VYLIMV+TF RAP AI+FSL Sbjct: 809 IANLDLPSGAKVNIAGATESMQENFTDLFKIMGIAIGIVYLIMVITFGQARAPFAILFSL 868 Query: 846 PXXXXXXXXXXXXXXXTPDFTALFGALMLIGIVVTNAIVLIDRIKQNEEH-MSVRESIIE 904 P D +L GALMLIGIVVTNAIVLI+R++QN EH M RE+++E Sbjct: 869 PLAAVGGILGLIISGTPVDVNSLIGALMLIGIVVTNAIVLIERVQQNREHGMETREALLE 928 Query: 905 AARTRLRPILMTAIATICAMLPLLFGHSEQGSIVSQSLAIVVIGGXXXXXXXXXXXXXXI 964 A TRLRPI+MTAI TI AMLPLLFG S+ GS+VS+SLA+VVIGG + Sbjct: 929 AGSTRLRPIIMTAITTIVAMLPLLFGQSQAGSMVSKSLAVVVIGGLAVSTVLTLVVVPVM 988 Query: 965 YELLYFRKSAKERTQEK 981 YELL + K R++ K Sbjct: 989 YELLD-KIGRKRRSRRK 1004 >Q81UY7.1 Q81UY7_BACAN Transporter, AcrB/AcrD/AcrF family Length = 1014 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 346/977 (35%), Positives = 533/977 (54%), Gaps = 11/977 (1%) Query: 15 SYTSLPMEFMPEADNPQVTVTVLGPGQDAHSMEANVTKPIEAATSAVKGKTEQMSTSGDG 74 S + LPMEF+P DNP VTVT L PG DA +M VT P+E ++ S++ +G Sbjct: 29 SGSKLPMEFLPSIDNPAVTVTTLSPGLDAEAMTKEVTDPLEKQFRNLEHIDNITSSTHEG 88 Query: 75 YAKVDIYFDGKTDMKDAAQEVEKAVGALHFPEGVMDPFIVQLNTSMIPISQLTVSFDEGI 134 +++DI + K +MKDA +EVEKA+ + P+ P + QLNT+MIP++Q+ + G Sbjct: 89 LSRIDIAYTSKANMKDATREVEKAINTIKLPKDATKPIVSQLNTTMIPLAQIAIQKQNGF 148 Query: 135 TKDNLKLAEETILPELQKIDGVANVALYGKTAPQVNVKLNPQAMAAKGIATAQVLGLLQG 194 +K + K E+ I+P+L+ IDGVANV +GK+ ++++ L+P + K + T Q+L +LQG Sbjct: 149 SKADEKQIEKEIVPQLESIDGVANVMFFGKSTSELSIILDPNQLKDKNVTTEQILKVLQG 208 Query: 195 RSVSASIGEQTIGGQTGNVNVVSSIDSIDTLKKLPVAPGVTLQDIAAVEAVTDQESVSRS 254 + S G T+ + N+ V+ I ++D +K + VAP V LQD+A +E +++S Sbjct: 209 KETSTPAGAVTVNKEEYNLRVIGDIKNVDDIKNITVAPHVKLQDVAQIELKQHYDTISHI 268 Query: 255 NGKDVLFAVITKEANANAVDVGGKVRDVAKDLTASVKNA-EVAVIFSTSDMVVTSVNSMM 313 NG++ +I KE + NAV +G ++ KD++ K+ + ++ ST + V +V SM Sbjct: 269 NGEEGTGLIIMKEPSKNAVAIGKEIDKKIKDISKQYKDQFSIKLLASTHEQVENAVTSMG 328 Query: 314 REVLLGALFATLVILVFLRNVRATLITAVSIPLSLAVTLYLLDVSGITLNIVTLXXXXXX 373 +EV+LGA+ ATL+IL+FLRN R TLI VSIPLS+ +TL+LL S ITLN +TL Sbjct: 329 KEVILGAIAATLIILIFLRNFRTTLIAVVSIPLSILLTLFLLHQSNITLNTLTLGGLAVA 388 Query: 374 XXRLVDDSIVVIENIHRRMQKEPFSIHMIISATREXXXXXXXXXXXXXXXFLPMGLLNGS 433 RLVDDSIVVIENI RR+QKE FS +I+ AT+E FLP+GL++G Sbjct: 389 VGRLVDDSIVVIENIFRRLQKEYFSKDIILDATKEVAVAITSSTLTTVAVFLPIGLVSGV 448 Query: 434 LQAFLLPFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEHEPSRRFGHFLEWNLRHK 493 + +LP K+ S R+ L+W L HK Sbjct: 449 IGKLMLPMVLAVVYSILSSLIVALTVVPLMAFLLLKKIKHKKPSSSPRYVATLKWALSHK 508 Query: 494 WIXXXXXXXXXXXSVAAYVTMPKGALDASNASNVTVQLVYPNDVPVKEVLEKGKQLEAEL 553 +I S+AAYV +PK + + + + +++ + +P D ++ +K E +L Sbjct: 509 FIILLTSFLLFAGSIAAYVLLPKANIKSEDDTMLSINMTFPADYALETQKQKAFDFEKKL 568 Query: 554 MKQPQAETVIMMTGNSADSAQWGSVTSLTQVDYTVMMKKDADAQVFLDQVRGWQKSYAGA 613 + VI+ G+SA+ AQWG T V+ KK +D ++ +++ ++ A Sbjct: 569 LSNSDVTDVILRMGSSAEDAQWGQTTKNNLASIFVVFKKGSDIDQYIKELKKEHNAFEPA 628 Query: 614 TLTANEXXXXXXXXTSEY-VDIVGDDLKSINSXXXXXXXXXXXXDGVQKVTSNMEDTKPV 672 L + + ++ + ++ D + KV +N+ED+K Sbjct: 629 ELDYIKTSYSSSGGGNNLQFNVTATNETNLKKAATIVETKLKNMDDLSKVKTNLEDSKKE 688 Query: 673 FAFKVNPVAANAQEISMQLAA-----MLNPVPLGQIELDGSPAGVVLEPVLQP-KGQKDL 726 + V+ A ++ +LAA ++ P+G++ ++ +++E + Q+D+ Sbjct: 689 WQIHVDQTKAEQLGLTPELAAQQVAFLMKKSPIGEVSINNEKTTIMIEHKKESITKQEDI 748 Query: 727 ENITIMT-AGGPQPLSTLAALEVTDQPAMLYHKDGKPYVRITAEVDPKKVSAIGADIQKQ 785 N I++ GP PL +A + ++HKDGK ++ITAE + +S + A++ K Sbjct: 749 LNTNILSPINGPIPLKDIATISEKQLQTEVFHKDGKETIQITAEASNEDLSKVSAEVNKA 808 Query: 786 TDRITLPAGVTLFAGGASADQAGDFNDLGMTALISIGLVYLIMVLTFKTLRAPLAIMFSL 845 + LP+G + GA+ +F DL I+IG+VYLIMV+TF RAP AI+FSL Sbjct: 809 ITDLDLPSGAKVNIAGATESMQENFTDLFKIMGIAIGIVYLIMVITFGQARAPFAILFSL 868 Query: 846 PXXXXXXXXXXXXXXXTPDFTALFGALMLIGIVVTNAIVLIDRIKQNEEH-MSVRESIIE 904 P D +L GALMLIGIVVTNAIVLI+R++QN EH M RE+++E Sbjct: 869 PLAAVGGILGLIISGTPVDVNSLIGALMLIGIVVTNAIVLIERVQQNREHGMETREALLE 928 Query: 905 AARTRLRPILMTAIATICAMLPLLFGHSEQGSIVSQSLAIVVIGGXXXXXXXXXXXXXXI 964 A TRLRPI+MTAI TI AMLPLLFG S+ GS+VS+SLA+VVIGG + Sbjct: 929 AGSTRLRPIIMTAITTIVAMLPLLFGQSQAGSMVSKSLAVVVIGGLAVSTVLTLVVVPVM 988 Query: 965 YELLYFRKSAKERTQEK 981 YELL + K R++ K Sbjct: 989 YELLD-KIGRKRRSRRK 1004 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,478,509,846 Number of extensions: 162348256 Number of successful extensions: 536423 Number of sequences better than 1.0e-05: 7077 Number of HSP's gapped: 513785 Number of HSP's successfully gapped: 13345 Length of query: 986 Length of database: 3,060,696,203 Length adjustment: 146 Effective length of query: 840 Effective length of database: 1,685,228,013 Effective search space: 1415591530920 Effective search space used: 1415591530920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 136 (57.0 bits)