BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0006.p
         (107 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DHY8.1 B1DHY8_9BACL Putative uncharacterized protein                177   2e-43
Q9RC86.1 Q9RC86_BACHD YULD                                            174   3e-42
A3DFC4.1 A3DFC4_CLOTH RDD domain containing protein                    72   2e-11
B4BDE5.1 B4BDE5_CLOTM RDD domain containing protein                    72   2e-11
C4V1L5.1 C4V1L5_9FIRM Possible L-rhamnose 1-epimerase                  67   4e-10

>B1DHY8.1 B1DHY8_9BACL Putative uncharacterized protein
          Length = 108

 Score =  177 bits (450), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/106 (75%), Positives = 92/106 (86%)

Query: 2   GSNKLAWTWRVKEESLEEYVQMHLNPWPEILQEHSKAGITNYSIFQHGNQFFYCFECNDT 61
            SNK AWTW++KEE LEEYV MHL PWPEI++EHS+AGI NYSIFQ+GNQFFYCFEC+D 
Sbjct: 3   NSNKFAWTWKIKEEMLEEYVAMHLAPWPEIMEEHSRAGIRNYSIFQNGNQFFYCFECDDV 62

Query: 62  EAAFAYIAQSEACNRWNAITSKMVEGSFDFNEETPMVPLREVFYLE 107
           E AF+ IA+SE CNRWNAITS+MVEGSFDF E  P+ PLREVFYL+
Sbjct: 63  EKAFSMIAESEPCNRWNAITSQMVEGSFDFREAEPIRPLREVFYLK 108


>Q9RC86.1 Q9RC86_BACHD YULD
          Length = 108

 Score =  174 bits (440), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 77/104 (74%), Positives = 88/104 (84%)

Query: 3   SNKLAWTWRVKEESLEEYVQMHLNPWPEILQEHSKAGITNYSIFQHGNQFFYCFECNDTE 62
           S K AWTW VKE  LEEYV MH++PWPE+L EH+KAGI NYSIFQ+GNQFFYCFEC+D +
Sbjct: 4   SKKFAWTWTVKESCLEEYVAMHVDPWPEVLAEHTKAGIRNYSIFQNGNQFFYCFECDDVD 63

Query: 63  AAFAYIAQSEACNRWNAITSKMVEGSFDFNEETPMVPLREVFYL 106
           AAFAYIA+SE C +WN +TSKMVEGSFDF E  P+ PLREVFYL
Sbjct: 64  AAFAYIAESEVCQKWNDLTSKMVEGSFDFKESNPIKPLREVFYL 107


>A3DFC4.1 A3DFC4_CLOTH RDD domain containing protein
          Length = 257

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 58/89 (65%)

Query: 3   SNKLAWTWRVKEESLEEYVQMHLNPWPEILQEHSKAGITNYSIFQHGNQFFYCFECNDTE 62
           S K AWTW +KEE L+++V++HL P PE+L+E  KAG  N S F +GNQFF+ FEC++ +
Sbjct: 163 SKKYAWTWSIKEEFLKDFVELHLKPSPEMLEEQKKAGYKNSSFFNNGNQFFFVFECDNID 222

Query: 63  AAFAYIAQSEACNRWNAITSKMVEGSFDF 91
            A  Y++ S+    W    S MVE  FD 
Sbjct: 223 YANNYLSSSQVFREWYETVSPMVENPFDL 251


>B4BDE5.1 B4BDE5_CLOTM RDD domain containing protein
          Length = 263

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 58/89 (65%)

Query: 3   SNKLAWTWRVKEESLEEYVQMHLNPWPEILQEHSKAGITNYSIFQHGNQFFYCFECNDTE 62
           S K AWTW +KEE L+++V++HL P PE+L+E  KAG  N S F +GNQFF+ FEC++ +
Sbjct: 169 SKKYAWTWSIKEEFLKDFVELHLKPSPEMLEEQKKAGYKNSSFFNNGNQFFFVFECDNID 228

Query: 63  AAFAYIAQSEACNRWNAITSKMVEGSFDF 91
            A  Y++ S+    W    S MVE  FD 
Sbjct: 229 YANNYLSSSQVFREWYETVSPMVENPFDL 257


>C4V1L5.1 C4V1L5_9FIRM Possible L-rhamnose 1-epimerase
          Length = 105

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 4/104 (3%)

Query: 5   KLAWTWRVKEESLEEYVQMHLNPWPEILQEHSKAGITNYSIFQHGNQFFYCFECNDTEA- 63
           + AW   VK+  L EY + H   WPE+ Q    AGI+NY+I+  GN+ F  FEC    A 
Sbjct: 3   RFAWKATVKDGMLAEYKRRHDAIWPELKQVLKDAGISNYTIWNTGNELFGYFECEKGVAY 62

Query: 64  AFAYIAQSEACNRWNAITSKMVEGSFDFNEETPMVP-LREVFYL 106
           A  Y A+SE  +RWNA    ++    + + ET   P +++VF+L
Sbjct: 63  AEDYQAKSEVVDRWNAYMKDVM--VMELDPETGAQPKMQQVFFL 104


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.132    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 653,967,520
Number of extensions: 22381290
Number of successful extensions: 49292
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 49343
Number of HSP's successfully gapped: 28
Length of query: 107
Length of database: 3,060,696,203
Length adjustment: 75
Effective length of query: 32
Effective length of database: 2,354,120,078
Effective search space: 75331842496
Effective search space used: 75331842496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)