BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0005.p (386 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7C1.1 B3K7C1_9BACI ABC-2 type transporter 369 e-100 B1QGE7.1 B1QGE7_CLOBO Drug ABC tranporter, ATP-binding/permease ... 153 3e-35 B1KV64.1 B1KV64_CLOBM Drug ABC tranporter, ATP-binding/permease ... 152 7e-35 B1IEK4.1 B1IEK4_CLOBK Drug ABC tranporter, ATP-binding/permease ... 151 9e-35 A7GAP9.1 A7GAP9_CLOBL Drug ABC tranporter, ATP-binding/permease ... 151 1e-34 >B3K7C1.1 B3K7C1_9BACI ABC-2 type transporter Length = 387 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 170/380 (44%), Positives = 255/380 (67%) Query: 5 LAIAWNMVKRTIASRKGMLTYILLPSIVIAAIISVTGGMEGDKPTVLYSNMDTGAAGRHL 64 L IAW+MV+RT+ ++G + Y+L+P +V+ + + G V Y N D G AGR+L Sbjct: 4 LTIAWHMVRRTLGRKRGWIVYLLVPCVVVTLTVFLLGQTTAASILVSYVNEDEGPAGRYL 63 Query: 65 LAELENTGDYKLIARNDEAALKEGIIQQEGAAGISIPAEYTAQLAHGQQPELSVYELRAS 124 + ELE +G Y L E L+E +++ + G+ IP ++ L GQ+P + +YE+ S Sbjct: 64 MNELERSGQYVLKESGSENMLREDLVENKSTVGVYIPQGFSDGLIEGQRPVVKIYEVSTS 123 Query: 125 ETSILVKMKVNTIAGEMLDTARTVNAVNGGAGDAEAKLGEILKQAEQHNVGSTRTDYDLY 184 E S++++M ++ + TA + + D L E+LKQ+ + V + TD +LY Sbjct: 124 EASVMIRMTADSAVTRLSGTAALIRETSEPDADRMLALQEVLKQSALNRVDTEVTDLNLY 183 Query: 185 PRQTLGVITGLTLMFLMGLVTSTVSLIMDDRKGRTMMRMFSAPVRSYEIALGNFLGSCMV 244 + L +TG TLMF+M L++S VS+++DDR+ RT+ RM++APVR+Y+IALGNFLGS +V Sbjct: 184 AKPGLSNVTGFTLMFMMTLISSVVSMMIDDRRQRTLSRMYTAPVRAYQIALGNFLGSLVV 243 Query: 245 GILQIAVVLTLGKWVLRYDYEVPMYLYFLVLAAFMLVSMGIASTVAGLVRNPGNAGMLNA 304 G LQ+ +VL L ++VLRYDY VP L+FL+L AFMLVS+G+ASTVAGL+RN NA M+N+ Sbjct: 244 GSLQVIIVLVLSRYVLRYDYGVPFMLHFLILMAFMLVSLGVASTVAGLIRNGQNAAMINS 303 Query: 305 LILTPTCMLGGCFWPISVMPDYMQKAANFVPQKWAIQAVDIAAAGGSWNELWLPFXXXXX 364 +I+TPTCMLGGCFWP+++MP++MQK ANF+PQKWAI+AV+ AA GG+ +++ LP Sbjct: 304 MIVTPTCMLGGCFWPLAIMPEFMQKIANFIPQKWAIEAVETAATGGTLSDIALPLAVLGL 363 Query: 365 XXXXXXXXXXXILRPNEAGI 384 +LRP+E+G+ Sbjct: 364 MAVILLAVGSAVLRPSESGV 383 >B1QGE7.1 B1QGE7_CLOBO Drug ABC tranporter, ATP-binding/permease protein Length = 380 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/360 (23%), Positives = 185/360 (51%), Gaps = 17/360 (4%) Query: 1 MNKILAIAWNMVKRTIASRKGMLTYILLP--SIVIAAIISVTGGMEGDKPTVLYSNMDTG 58 M +I + +++KRT + ++T+ILLP ++ IA ++ +G V +++ Sbjct: 1 MKQIFLLTKSILKRTFRKKSNIITFILLPLLAVFIALFLNASGSSYSKIGVV---DLNES 57 Query: 59 AAGRHLLAELENTGDYKLIARNDEAALKEGIIQQEGAAGISIPAEYTAQLAHGQQPELSV 118 + ++ ++ ++ ++ + + + + ++ ++ + IP ++ + G +L + Sbjct: 58 YLSKDMIKSIDAKKNF-VVVKVPKNNMNKLLLDKKVDCVVVIPKDFHKDIIDGNFKKLDI 116 Query: 119 YELRASETSILVKMKVNTIAGEMLDTARTVN-AVNGGAGDAEAKLGEILKQAEQHNVGST 177 +R + + +K +N +DT ++ A N D +A E KQ + N + Sbjct: 117 ISVRGEDITSWIKNYLN----YYIDTLNNISVASNKNEKDFKAIYDEYKKQDLKLNYKAI 172 Query: 178 --RTDYDLYPRQTLGVITGLTLMFLMGLVTSTVSLIMDDRKGRTMMRMFSAPVRSYEIAL 235 +T +Q++G L L+F++ ++ S I+ D+ +T R+F + + + Sbjct: 173 GDKTKTKSVTKQSIG----LLLVFMLIASSTASSFILKDKYNKTYYRIFCSNTSKSKYII 228 Query: 236 GNFLGSCMVGILQIAVVLTLGKWVLRYDYEVPMYLYFLVLAAFMLVSMGIASTVAGLVRN 295 N + + ++ ++QI V+L + +VL+ ++ + + F++L +F VS+G +A ++ Sbjct: 229 ANVIANFVIFLIQIFVILFMSIYVLKLNFYIDTSIMFIILCSFGFVSIGFGIIIAAFSKS 288 Query: 296 PGNAGMLNALILTPTCMLGGCFWPISVMPDYMQKAANFVPQKWAIQAVDIAAAGGSWNEL 355 + L+ +++TPTCML GCFWP+ +MP +MQK AN PQ W ++ +D G S+NE+ Sbjct: 289 LNQSSYLSNILITPTCMLSGCFWPLDMMPSFMQKLANIFPQTWVLKTIDSLQQGKSFNEV 348 >B1KV64.1 B1KV64_CLOBM Drug ABC tranporter, ATP-binding/permease protein Length = 380 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 84/360 (23%), Positives = 184/360 (51%), Gaps = 17/360 (4%) Query: 1 MNKILAIAWNMVKRTIASRKGMLTYILLP--SIVIAAIISVTGGMEGDKPTVLYSNMDTG 58 M +I + +++KRT R ++T+ILLP ++ IA ++ +G V +++ Sbjct: 1 MKQIFLLTKSILKRTFRKRSNIITFILLPLLAVFIALFLNASGNSYSKIGVV---DLNES 57 Query: 59 AAGRHLLAELENTGDYKLIARNDEAALKEGIIQQEGAAGISIPAEYTAQLAHGQQPELSV 118 + ++ ++ ++ ++ + + + + ++ ++ + IP ++ + G +L + Sbjct: 58 YLSKDMIKSIDAKKNF-VVVKVSKNNMNKILLDKKVDCVVVIPKDFHKDIIDGNFKKLDI 116 Query: 119 YELRASETSILVKMKVNTIAGEMLDTARTVN-AVNGGAGDAEAKLGEILKQAEQHNVGST 177 +R + + +K +N +DT ++ A N D +A KQ + N + Sbjct: 117 ISVRGEDITSWIKNYLN----YYIDTLNNISVASNKNEKDFKAIYDGYKKQDLKLNYKAI 172 Query: 178 --RTDYDLYPRQTLGVITGLTLMFLMGLVTSTVSLIMDDRKGRTMMRMFSAPVRSYEIAL 235 +T +Q++G L L+F++ ++ S I+ D+ +T R+F + + + Sbjct: 173 GDKTKTKSVTKQSIG----LLLVFMLIASSTASSFILKDKYNKTYYRIFCSNTSKSKYII 228 Query: 236 GNFLGSCMVGILQIAVVLTLGKWVLRYDYEVPMYLYFLVLAAFMLVSMGIASTVAGLVRN 295 N + + ++ ++QI V+L + +VL+ ++ + + F++L +F VS+G +A ++ Sbjct: 229 ANVIANFVIFLIQIFVILFMSIYVLKLNFYINTSIMFIILCSFGFVSIGFGIIIAAFSKS 288 Query: 296 PGNAGMLNALILTPTCMLGGCFWPISVMPDYMQKAANFVPQKWAIQAVDIAAAGGSWNEL 355 + L+ +++TPTCML GCFWP+ +MP +MQK AN PQ W ++ +D G S+NE+ Sbjct: 289 LNQSSYLSNILITPTCMLSGCFWPLDMMPSFMQKLANIFPQTWVLKTIDSLQQGKSFNEV 348 >B1IEK4.1 B1IEK4_CLOBK Drug ABC tranporter, ATP-binding/permease protein Length = 380 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 83/360 (23%), Positives = 185/360 (51%), Gaps = 17/360 (4%) Query: 1 MNKILAIAWNMVKRTIASRKGMLTYILLP--SIVIAAIISVTGGMEGDKPTVLYSNMDTG 58 M +I + +++KRT + ++T+ILLP ++ IA ++ +G V +++ Sbjct: 1 MKQIFLLTKSILKRTFRKKSNIITFILLPLLAVFIALFLNASGNSYSKIGVV---DLNES 57 Query: 59 AAGRHLLAELENTGDYKLIARNDEAALKEGIIQQEGAAGISIPAEYTAQLAHGQQPELSV 118 + ++ ++ ++ ++ + + + + ++ ++ + IP ++ + G+ +L + Sbjct: 58 YLSKDMIKSIDAKKNF-VVVKISKNNMNKLLLDKKVDCVVVIPKDFNKDIIDGKFKKLDI 116 Query: 119 YELRASETSILVKMKVNTIAGEMLDTARTVN-AVNGGAGDAEAKLGEILKQAEQHNVGST 177 +R + + +K +N +DT ++ A N D +A KQ + N + Sbjct: 117 ISVRGEDITSWIKNYLN----YYIDTLNNISVASNKNEKDFKAIYDGYKKQDLKLNYKAI 172 Query: 178 --RTDYDLYPRQTLGVITGLTLMFLMGLVTSTVSLIMDDRKGRTMMRMFSAPVRSYEIAL 235 +T +Q++G L L+F++ ++ S I+ D+ +T R+F + + + Sbjct: 173 GDKTKTKSVTKQSIG----LLLVFMLIASSTASSFILKDKYNKTYYRIFCSNTSKSKYII 228 Query: 236 GNFLGSCMVGILQIAVVLTLGKWVLRYDYEVPMYLYFLVLAAFMLVSMGIASTVAGLVRN 295 N + + ++ ++QI V+L + +VL+ ++ + + F++L +F VS+G +A ++ Sbjct: 229 ANVIANFVIFLIQIFVILFMSIYVLKLNFYIDTSIMFIILCSFGFVSIGFGIIIAAFSKS 288 Query: 296 PGNAGMLNALILTPTCMLGGCFWPISVMPDYMQKAANFVPQKWAIQAVDIAAAGGSWNEL 355 + L+ +++TPTCML GCFWP+ +MP +MQK AN PQ W ++ +D G S+NE+ Sbjct: 289 LNQSSYLSNILITPTCMLSGCFWPLDMMPSFMQKLANIFPQTWVLKTIDSLQQGKSFNEV 348 >A7GAP9.1 A7GAP9_CLOBL Drug ABC tranporter, ATP-binding/permease protein Length = 380 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/360 (23%), Positives = 184/360 (51%), Gaps = 17/360 (4%) Query: 1 MNKILAIAWNMVKRTIASRKGMLTYILLP--SIVIAAIISVTGGMEGDKPTVLYSNMDTG 58 M +I + +++KRT + ++T+ILLP ++ IA ++ +G V +++ Sbjct: 1 MKQIFLLTKSILKRTFRKKSNIITFILLPLLAVFIALFLNASGNSYSKIGVV---DLNES 57 Query: 59 AAGRHLLAELENTGDYKLIARNDEAALKEGIIQQEGAAGISIPAEYTAQLAHGQQPELSV 118 + ++ ++ ++ ++ + + + ++ ++ + IP ++ + G+ +L + Sbjct: 58 YLSKDMIKSIDAKKNF-VVRKASKDNMNRLLLDKKVDCVVVIPKDFNKDIIDGKFKKLDI 116 Query: 119 YELRASETSILVKMKVNTIAGEMLDTARTVN-AVNGGAGDAEAKLGEILKQAEQHNVGST 177 +R + + +K +N +DT ++ A N D +A KQ + N + Sbjct: 117 ISVRGEDITSWIKNYLN----YYIDTLNNISVASNKNEKDFKAIYDGYKKQDLKLNYKAI 172 Query: 178 --RTDYDLYPRQTLGVITGLTLMFLMGLVTSTVSLIMDDRKGRTMMRMFSAPVRSYEIAL 235 +T +Q++G L L+F++ ++ S I+ D+ +T R+F + + + Sbjct: 173 GDKTKTKSVTKQSIG----LLLVFMLIASSTASSFILKDKYNKTYYRIFCSNTSKSKYII 228 Query: 236 GNFLGSCMVGILQIAVVLTLGKWVLRYDYEVPMYLYFLVLAAFMLVSMGIASTVAGLVRN 295 N + + ++ ++QI V+L + +VL+ ++ + + F++L +F VS+G +A ++ Sbjct: 229 ANVIANFVIFLIQIFVILFMSIYVLKLNFYIDTSIMFIILCSFGFVSIGFGIIIAAFSKS 288 Query: 296 PGNAGMLNALILTPTCMLGGCFWPISVMPDYMQKAANFVPQKWAIQAVDIAAAGGSWNEL 355 + L+ +++TPTCML GCFWP+ +MP +MQK AN PQ W ++ +D G S+NE+ Sbjct: 289 LNQSSYLSNILITPTCMLSGCFWPLDMMPSFMQKLANIFPQTWVLKTIDSLQQGKSFNEV 348 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,112,624,810 Number of extensions: 83722415 Number of successful extensions: 235500 Number of sequences better than 1.0e-05: 525 Number of HSP's gapped: 236187 Number of HSP's successfully gapped: 525 Length of query: 386 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 249 Effective length of database: 1,770,017,148 Effective search space: 440734269852 Effective search space used: 440734269852 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)