BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0001.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7C5.1 B3K7C5_9BACI Response regulator receiver 306 7e-82 Q97MF8.1 Q97MF8_CLOAB Response regulator (CheY-like recever doma... 218 4e-55 B1IKB2.1 B1IKB2_CLOBK DNA-binding response regulator, LuxR family 215 3e-54 B1L0K3.1 B1L0K3_CLOBM DNA-binding response regulator, LuxR family 214 3e-54 A7GD81.1 A7GD81_CLOBL DNA-binding response regulator, LuxR family 214 3e-54 >B3K7C5.1 B3K7C5_9BACI Response regulator receiver Length = 216 Score = 306 bits (785), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 155/216 (71%), Positives = 179/216 (82%), Gaps = 5/216 (2%) Query: 1 MIKVVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPN 60 MI V+I DDD FIRESLK+LV +DP+IEV+ A G EAL+LL HADVVLMDIRMP Sbjct: 1 MISVLIADDDPFIRESLKLLVGMDPDIEVSAVAEHGEEALSLLMDGLHADVVLMDIRMPV 60 Query: 61 CDGVEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVH 120 CDGVEGT+ I+E YP + VLMLTTFDDD+YI+EALRNGASGYLLKNIPPDRIIQGIKTVH Sbjct: 61 CDGVEGTRRIRERYPDVRVLMLTTFDDDDYIVEALRNGASGYLLKNIPPDRIIQGIKTVH 120 Query: 121 EGNLLIHPDIARKLAGFLQPAAPPKEAMPKT--LEGYGLTKAELAVVSLIAEGHTNKEIA 178 +GN+LIHPDIARKL G L+P P +P++ LE +GLT AE VV+LIAEG +NKEIA Sbjct: 121 DGNMLIHPDIARKLTGMLRPTPQP---VPRSAELEQFGLTPAEKRVVALIAEGLSNKEIA 177 Query: 179 AELFLSEGTVKNYITDILSKLGLRDRTQIAIFYWKN 214 A+L+LSEGTVKNY+T+IL KL LRDRTQIAIFY K Sbjct: 178 AQLYLSEGTVKNYVTEILGKLNLRDRTQIAIFYLKK 213 >Q97MF8.1 Q97MF8_CLOAB Response regulator (CheY-like recever domain and HTH DNA-binding domain) Length = 208 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 110/213 (51%), Positives = 151/213 (70%), Gaps = 6/213 (2%) Query: 2 IKVVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPNC 61 +KV+IVDDD+ IRESL +L+ L+ EIE+ G+ +G+EA + D+VLMDIRMP Sbjct: 1 MKVLIVDDDALIRESLSILLDLEDEIEIIGTCANGQEAFDFCKN-NRPDIVLMDIRMPIM 59 Query: 62 DGVEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVHE 121 DGV GTK IKE++ I V++LTTF DDEYI EAL+NGA GY+LKN D II +K V Sbjct: 60 DGVLGTKVIKESFKDIKVVILTTFKDDEYIKEALKNGAEGYILKNQSSDSIIDSLKAVVN 119 Query: 122 GNLLIHPDIARKLAGFLQPAAPPKEAMPKTLEGYGLTKAELAVVSLIAEGHTNKEIAAEL 181 GN++ ++A+ ++ F++ ++ LE Y LT+ E+ V+ I +G +NKEIA++L Sbjct: 120 GNMVFEQNVAKTISNFIK-----EDKSNNGLEQYNLTEREMEVLRNIGDGLSNKEIASKL 174 Query: 182 FLSEGTVKNYITDILSKLGLRDRTQIAIFYWKN 214 +LSEGTV+NYIT +L KL LRDRTQ+AIFY KN Sbjct: 175 YLSEGTVRNYITSLLEKLELRDRTQLAIFYLKN 207 >B1IKB2.1 B1IKB2_CLOBK DNA-binding response regulator, LuxR family Length = 217 Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 111/213 (52%), Positives = 150/213 (70%), Gaps = 5/213 (2%) Query: 4 VVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPNCDG 63 +++ DD+ IRE LK++++ +IEV G AGDGREAL+L ++ VVLMDIRMPNCDG Sbjct: 6 IIVADDEKLIREGLKIILSTYNDIEVVGLAGDGREALSLCKE-KDVQVVLMDIRMPNCDG 64 Query: 64 VEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVHEGN 123 V GT+ IKE +P I +L+LTTF+D EYI EAL+ GASGYLLK+ + I +GIK +GN Sbjct: 65 VLGTRIIKEQFPHIKILILTTFNDKEYIHEALKFGASGYLLKDSSNELIYEGIKACVKGN 124 Query: 124 LLIHPDIARKLAGFLQPAAPPKEAMPKTLE-GYGLTKAELAVVSLIAEGHTNKEIAAELF 182 +++HPD+A + + KE + Y LT+ E+ ++ IA G +NKEIA E++ Sbjct: 125 VVVHPDVANNI---ILNTTYEKELNDDDISLKYNLTEREINIIRQIANGFSNKEIAEEIY 181 Query: 183 LSEGTVKNYITDILSKLGLRDRTQIAIFYWKNQ 215 LSEGT+KN I+ ILSKL LRDRTQIAIF +KN Sbjct: 182 LSEGTIKNNISTILSKLDLRDRTQIAIFAFKNN 214 >B1L0K3.1 B1L0K3_CLOBM DNA-binding response regulator, LuxR family Length = 217 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 111/213 (52%), Positives = 151/213 (70%), Gaps = 5/213 (2%) Query: 4 VVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPNCDG 63 +++VDD+ IRE LK++++ +IEV G AGDGREAL+L ++ VVLMDIRMPNCDG Sbjct: 6 IIVVDDEKLIREGLKIILSTYNDIEVVGLAGDGREALSLCKE-KDVQVVLMDIRMPNCDG 64 Query: 64 VEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVHEGN 123 V GT+ IKE +P I +L+LTTF+D EYI EAL+ GASGYLLK+ + I +GIK +GN Sbjct: 65 VLGTRIIKEQFPHIKILILTTFNDKEYIHEALKFGASGYLLKDSSNELIYEGIKACVKGN 124 Query: 124 LLIHPDIARKLAGFLQPAAPPKEAMPKTLE-GYGLTKAELAVVSLIAEGHTNKEIAAELF 182 +++HPD+A + + KE + Y LT+ E+ ++ IA G +NKEIA +++ Sbjct: 125 VVVHPDVANNI---ILNTTYEKELNDDDINLKYNLTEREINIIRQIANGLSNKEIAEKIY 181 Query: 183 LSEGTVKNYITDILSKLGLRDRTQIAIFYWKNQ 215 LSEGT+KN I+ ILSKL LRDRTQIAIF +KN Sbjct: 182 LSEGTIKNNISTILSKLDLRDRTQIAIFAFKNN 214 >A7GD81.1 A7GD81_CLOBL DNA-binding response regulator, LuxR family Length = 217 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 111/213 (52%), Positives = 151/213 (70%), Gaps = 5/213 (2%) Query: 4 VVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPNCDG 63 +++VDD+ IRE LK++++ +IEV G AGDGREAL+L ++ VVLMDIRMPNCDG Sbjct: 6 IIVVDDEKLIREGLKIILSTYNDIEVVGLAGDGREALSLCKE-KDVQVVLMDIRMPNCDG 64 Query: 64 VEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVHEGN 123 V GT+ IKE +P I +L+LTTF+D EYI EAL+ GASGYLLK+ + I +GIK +GN Sbjct: 65 VLGTRIIKEQFPHIKILILTTFNDKEYIHEALKFGASGYLLKDSSNELIYEGIKACVKGN 124 Query: 124 LLIHPDIARKLAGFLQPAAPPKEAMPKTLE-GYGLTKAELAVVSLIAEGHTNKEIAAELF 182 +++HPD+A + + KE + Y LT+ E+ ++ IA G +NKEIA +++ Sbjct: 125 VVVHPDVANNI---ILNTTYEKELNDDDISLKYNLTEREINIIRQIANGLSNKEIAEKIY 181 Query: 183 LSEGTVKNYITDILSKLGLRDRTQIAIFYWKNQ 215 LSEGT+KN I+ ILSKL LRDRTQIAIF +KN Sbjct: 182 LSEGTIKNNISTILSKLDLRDRTQIAIFAFKNN 214 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,292,101,175 Number of extensions: 52345798 Number of successful extensions: 218865 Number of sequences better than 1.0e-05: 12511 Number of HSP's gapped: 218104 Number of HSP's successfully gapped: 12517 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)