BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0119.0007.p (581 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9N5.1 B3K9N5_9BACI ABC transporter related 730 0.0 P54718.1 YFIB_BACSU Uncharacterized ABC transporter ATP-binding ... 563 e-158 A7Z2J8.1 A7Z2J8_BACA2 YfiB 562 e-158 Q2BCM9.1 Q2BCM9_9BACI Putative uncharacterized protein 555 e-156 A6CMR5.1 A6CMR5_9BACI Putative uncharacterized protein 552 e-155 >B3K9N5.1 B3K9N5_9BACI ABC transporter related Length = 580 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/576 (62%), Positives = 432/576 (75%), Gaps = 2/576 (0%) Query: 1 MNIIFSYLKTYRXXXXXXXXXXXXXXXXELSQPLLISRIIDDGIRAQDNRIVWLWGGVLV 60 M I+FS LK YR EL QPLLIS+IIDDGI+ QD +VW+WG VL Sbjct: 1 MGIVFSILKKYRVAAIAALAMMLIELTVELIQPLLISKIIDDGIQKQDMSVVWMWGAVLT 60 Query: 61 VSAVLAFIAGVLSSFFASHASQGFAFDLRDQLYEKVQSFTYAVFSRFTTSSLITRLTADV 120 SA++AFIAG+ SSFFA+H SQG +DLRDQLY+KVQSF+Y++F+RF TSSLITRLT DV Sbjct: 61 GSAIIAFIAGISSSFFAAHTSQGLGYDLRDQLYDKVQSFSYSIFNRFATSSLITRLTGDV 120 Query: 121 SQLQDTIFMGLRFMTRVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVMKKASVL 180 +Q+QDT+FMGLRFMTRVP W+MK+A+ Sbjct: 121 TQIQDTVFMGLRFMTRVPLVVLGSIIMALVVNVKLGLLLVLTVPVLFIFIAWIMKRAADA 180 Query: 181 FRSVQNRLDGVNSVIQENLTGIRLIRVFVRMNHEIARFAAFSGELMKSTVAALRLTETSA 240 FRSVQ RLD VN VIQENLTGIRLIRVFVRM HEI RFA SG+LM +TV+ LRLTET+ Sbjct: 181 FRSVQQRLDAVNGVIQENLTGIRLIRVFVRMGHEIERFARTSGKLMSTTVSTLRLTETTM 240 Query: 241 PLIMLIVNAGIMLVLWFGRIEISTGEATLGQTVAVINYSLRTIGALSALSWIMATFSRAR 300 P I+L++NAGIM VLWFGR +I++G A++G+ VAV+NYSLR IGA+SALSW++ FSR R Sbjct: 241 PFILLVMNAGIMAVLWFGRKDIASGSASVGEVVAVVNYSLRCIGAMSALSWVVVAFSRGR 300 Query: 301 ASSQRIQEVMSADELEAKEMAAVTAREIAPIRGKVEFRQVSFRYPQSDIAVLEDITFKVQ 360 AS+QR QEV+ +++ A + I+G V+F QVSF YP SDI VL DI+F+ + Sbjct: 301 ASAQRAQEVLGTEDMAAGANKDQAGK--VDIQGGVKFEQVSFSYPGSDIDVLTDISFEAK 358 Query: 361 PGDRVAIMGATGSGKSSLVGLIPRLYEQSSGDILVDGIPGAEMEISRLRGAIGYVPQEVL 420 PG+R+AIMGATGSGKSSLV LIPRLYE+ G +LVDG+ A ++ LR +IGYVPQEVL Sbjct: 359 PGERIAIMGATGSGKSSLVQLIPRLYEEEKGTVLVDGVDAASIDEVNLRSSIGYVPQEVL 418 Query: 421 LFTGSVRENIAWGHPQATQDEIEQAAMAAQIHETVQELPNGYDTMLGQRGVNLSGGQKQR 480 LF+G+VRENIAWG AT +EI++AA AQIHET++ LPNGYDTMLGQRGVNLSGGQKQR Sbjct: 419 LFSGTVRENIAWGREDATMEEIQEAARRAQIHETIEHLPNGYDTMLGQRGVNLSGGQKQR 478 Query: 481 LTIARALVRKPAVLILDDSTSALDAVTESRLLAELKGMSCTTFLITQKISSTVSADLILL 540 L+IARALVRKPA+LILDDSTSALD TE LL LK +SCTTFLITQKISST SADLILL Sbjct: 479 LSIARALVRKPAILILDDSTSALDVRTEGALLDALKDLSCTTFLITQKISSTTSADLILL 538 Query: 541 LDEGRLIAQGTHEELMERSELYRKINESQHREGVQH 576 LD+GRLI +G H+ LM+ S LYR+I ESQ+ E QH Sbjct: 539 LDDGRLIGKGNHDALMKSSALYRRIYESQYGEEAQH 574 >P54718.1 YFIB_BACSU Uncharacterized ABC transporter ATP-binding protein yfiB Length = 573 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 280/574 (48%), Positives = 384/574 (66%), Gaps = 6/574 (1%) Query: 1 MNIIFSYLKTYRXXXXXXXXXXXXXXXXELSQPLLISRIIDDGIRAQDNRIVWLWGGVLV 60 M S+LK Y EL QPLLI++IIDDGI QD R VW+WG V++ Sbjct: 1 MQKALSFLKPYSLLAGIALILMLTELAVELMQPLLIAKIIDDGILKQDLRHVWIWGTVMI 60 Query: 61 VSAVLAFIAGVLSSFFASHASQGFAFDLRDQLYEKVQSFTYAVFSRFTTSSLITRLTADV 120 VL+F AG+L+SF+A+H SQ F++D R L++K+QSF+Y+ F +F++SS ITRLT DV Sbjct: 61 GLTVLSFAAGMLNSFYAAHVSQSFSYDTRKGLFQKIQSFSYSTFGQFSSSSYITRLTNDV 120 Query: 121 SQLQDTIFMGLRFMTRVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVMKKASVL 180 +Q+Q+ IFM LRFM R P WV++K L Sbjct: 121 TQVQNMIFMSLRFMLRAPLMIAGGIVLSLAVNVKLGFFLLVTIPILILFLLWVLRKGGAL 180 Query: 181 FRSVQNRLDGVNSVIQENLTGIRLIRVFVRMNHEIARFAAFSGELMKSTVAALRLTETSA 240 FRSVQ RLD VN+++QENL I+LI+ +R +HE+ RF + LM+ TV+A +L E + Sbjct: 181 FRSVQKRLDQVNTIMQENLIAIKLIKALLRGSHEVKRFIKANTRLMEKTVSAFQLVEFTM 240 Query: 241 PLIMLIVNAGIMLVLWFGRIEISTGEATLGQTVAVINYSLRTIGALSALSWIMATFSRAR 300 P++ML++N I+L+LW G I++G +G VA+INY+ R GALS +++ F+RA+ Sbjct: 241 PVLMLLMNLCILLILWAGSYSITSGSTQVGDVVAIINYATRITGALSMFPFLIMIFTRAK 300 Query: 301 ASSQRIQEVMSADELEAKEMAAVTAREIAPIRGKVEFRQVSFRYPQSDIAVLEDITFKVQ 360 AS RI EV+ E + +E ++ R + G++EF+ VSFRYP+ D L +++F + Sbjct: 301 ASGDRIGEVLET-EGDEREEGTISDR----LSGRIEFQHVSFRYPEMDREALRNVSFSAK 355 Query: 361 PGDRVAIMGATGSGKSSLVGLIPRLYEQSSGDILVDGIPGAEMEISRLRGAIGYVPQEVL 420 P + +AI+GATGSGKS+L LIPRLY+ SG I +D P ++ LR IGYVPQEVL Sbjct: 356 PRETIAILGATGSGKSTLFQLIPRLYQPDSGRIYIDEKPVQDIPAEGLRRQIGYVPQEVL 415 Query: 421 LFTGSVRENIAWGHPQATQDEIEQAAMAAQIHETVQELPNGYDTMLGQRGVNLSGGQKQR 480 LF+G+++ENIAWG A+ DEI AA AQIHET+ +LPNGYDT+LGQRGVNLSGGQKQR Sbjct: 416 LFSGTIKENIAWGKENASLDEIMDAAKLAQIHETILKLPNGYDTVLGQRGVNLSGGQKQR 475 Query: 481 LTIARALVRKPAVLILDDSTSALDAVTESRLLAELKGMSCTTFLITQKISSTVSADLILL 540 ++IARAL+RKPA+L+LDDSTSALD TE++LL + CTT +ITQKI++ + AD ILL Sbjct: 476 ISIARALIRKPAILLLDDSTSALDLQTEAKLLEAISTYHCTTLIITQKITTAMKADQILL 535 Query: 541 LDEGRLIAQGTHEELMERSELYRKINESQH-REG 573 L++G LI +GTH EL+ S+LY++I ESQ REG Sbjct: 536 LEDGELIEKGTHSELLSESQLYKRIYESQFGREG 569 >A7Z2J8.1 A7Z2J8_BACA2 YfiB Length = 577 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 282/579 (48%), Positives = 386/579 (66%), Gaps = 6/579 (1%) Query: 1 MNIIFSYLKTYRXXXXXXXXXXXXXXXXELSQPLLISRIIDDGIRAQDNRIVWLWGGVLV 60 M+ SY+K Y EL QPLLI +IID+GI QD VWLWGGV++ Sbjct: 1 MSKALSYVKPYSLLAGIALFFMLIELAVELLQPLLIGKIIDEGILKQDLGTVWLWGGVMI 60 Query: 61 VSAVLAFIAGVLSSFFASHASQGFAFDLRDQLYEKVQSFTYAVFSRFTTSSLITRLTADV 120 ++F +G+L+SF+++H SQ +A+D R L++K+QSF+Y+ F++F+++S ITRLT DV Sbjct: 61 GLTAVSFASGILNSFYSAHISQSYAYDTRKGLFQKIQSFSYSTFAQFSSTSFITRLTNDV 120 Query: 121 SQLQDTIFMGLRFMTRVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVMKKASVL 180 +Q+Q+ +FM LRFM R P WV+K+ L Sbjct: 121 TQVQNMLFMSLRFMLRAPLMIAGGIILSLTVNAKLGFFLLITVPILLLFLLWVLKRGGAL 180 Query: 181 FRSVQNRLDGVNSVIQENLTGIRLIRVFVRMNHEIARFAAFSGELMKSTVAALRLTETSA 240 FRSVQ RLD VN+++QENLT I+LI+ +R NHE+ RF + +LM+ TV+A RL E + Sbjct: 181 FRSVQKRLDQVNTIMQENLTAIKLIKALLRANHEVKRFLKSNTKLMEKTVSAFRLVEAAM 240 Query: 241 PLIMLIVNAGIMLVLWFGRIEISTGEATLGQTVAVINYSLRTIGALSALSWIMATFSRAR 300 P++ML++N I+ +LWFG I+ G A +G V+VINY+ R GALS L +++ FSRA+ Sbjct: 241 PILMLLMNICILFILWFGAKSIAQGGAQVGDVVSVINYATRITGALSVLPFLIMVFSRAK 300 Query: 301 ASSQRIQEVMSADELEAKEMAAVTAREIAPIRGKVEFRQVSFRYPQSDIAVLEDITFKVQ 360 AS +RI EV+ + E AR +A G +EFR+VSFRYP + L ++F Sbjct: 301 ASGERIGEVLETEGGEGT--GQDPARALA---GGIEFREVSFRYPGMEKDALHHVSFSAS 355 Query: 361 PGDRVAIMGATGSGKSSLVGLIPRLYEQSSGDILVDGIPGAEMEISRLRGAIGYVPQEVL 420 P + VAIMGATGSGKS+L LIPRLY SG I +DG P E LR IGYVPQEVL Sbjct: 356 PKETVAIMGATGSGKSTLFQLIPRLYTADSGSIFIDGKPIGEFSACGLRREIGYVPQEVL 415 Query: 421 LFTGSVRENIAWGHPQATQDEIEQAAMAAQIHETVQELPNGYDTMLGQRGVNLSGGQKQR 480 LF+G++RENIAWG A+ DE+ +AA AQIH+T+ +L NGYDT+LGQRGVNLSGGQKQR Sbjct: 416 LFSGTIRENIAWGREDASLDEVMEAAKDAQIHDTIMKLSNGYDTVLGQRGVNLSGGQKQR 475 Query: 481 LTIARALVRKPAVLILDDSTSALDAVTESRLLAELKGMSCTTFLITQKISSTVSADLILL 540 ++IARA +RKP++L+LDDSTSALD TE++LL ++ CTT +ITQKI++ + AD ILL Sbjct: 476 ISIARAFIRKPSLLLLDDSTSALDLQTEAKLLQAIRSYECTTLIITQKITTAMKADTILL 535 Query: 541 LDEGRLIAQGTHEELMERSELYRKINESQH-REGVQHVQ 578 L++G L+A+GTH+ELM +S LYR+I ESQ +EG + + Sbjct: 536 LEDGELLAKGTHKELMAQSHLYRQIYESQFGKEGADNAK 574 >Q2BCM9.1 Q2BCM9_9BACI Putative uncharacterized protein Length = 580 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 283/580 (48%), Positives = 387/580 (66%), Gaps = 5/580 (0%) Query: 1 MNIIFSYLKTYRXXXXXXXXXXXXXXXXELSQPLLISRIIDDGIRAQDNRIVWLWGGVLV 60 M +F +LK YR EL QPLL+++IID+GI +D V +WGGV+V Sbjct: 1 MGKVFGFLKIYRVAVIVALSLMLTELAVELLQPLLMAKIIDEGIMKKDMDEVLIWGGVMV 60 Query: 61 VSAVLAFIAGVLSSFFASHASQGFAFDLRDQLYEKVQSFTYAVFSRFTTSSLITRLTADV 120 +++AF AG+++SF+A+H SQ F FD+R ++ KVQSF++A F+ F SSLITR+T DV Sbjct: 61 GISLIAFAAGIINSFYAAHVSQSFGFDIRKSVFRKVQSFSFANFAMFPGSSLITRMTNDV 120 Query: 121 SQLQDTIFMGLRFMTRVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVMKKASVL 180 + LQ+ +FM LR M R P ++M K L Sbjct: 121 TLLQNIVFMSLRIMMRAPLLVIGGLIMAFVVNVKLALILSAVVPFLFIFLIFIMNKGGAL 180 Query: 181 FRSVQNRLDGVNSVIQENLTGIRLIRVFVRMNHEIARFAAFSGELMKSTVAALRLTETSA 240 F+ VQ +LD VN+V+QENL GIRLI+ F+R NHE RF +G+L TV ALRL E + Sbjct: 181 FKKVQEKLDDVNNVMQENLAGIRLIKAFLRRNHESERFTEVTGDLKDQTVFALRLMEVTM 240 Query: 241 PLIMLIVNAGIMLVLWFGRIEISTGEATLGQTVAVINYSLRTIGALSALSWIMATFSRAR 300 P+++LI+N I+ VLWFG I++ G A +G+ VAVINY+ R GALS LS+I+ FSRA+ Sbjct: 241 PMLLLIMNISIIGVLWFGSIQVDDGSAKVGEVVAVINYATRITGALSMLSFIIMAFSRAK 300 Query: 301 ASSQRIQEVMSAD-ELEAKEMAAVTAREIAPIRGKVEFRQVSFRYPQSDIAVLEDITFKV 359 AS+ RI +V++ + +L+ E A + EI G++EF VSFRYP +D VL+ ++FK+ Sbjct: 301 ASAGRIADVLNTEVDLKDSEQA-LAGFEIEG--GEIEFDSVSFRYPGTDTVVLDGVSFKI 357 Query: 360 QPGDRVAIMGATGSGKSSLVGLIPRLYEQSSGDILVDGIPGAEMEISRLRGAIGYVPQEV 419 + G+ AI+GATG+GKSSL LIPRLY+ + G + +DG +++ LR IG+VPQE Sbjct: 358 KAGETAAILGATGAGKSSLFQLIPRLYDVTGGTVRIDGQDIGRVKLDDLRKQIGFVPQEA 417 Query: 420 LLFTGSVRENIAWGHPQATQDEIEQAAMAAQIHETVQELPNGYDTMLGQRGVNLSGGQKQ 479 LLFTGSV+ENI WG AT E+E+AA AQIH +++ L YDT +GQ+GVNLSGGQKQ Sbjct: 418 LLFTGSVQENIRWGKEDATPAEVEEAAKKAQIHSSIERLSAKYDTKIGQKGVNLSGGQKQ 477 Query: 480 RLTIARALVRKPAVLILDDSTSALDAVTESRLLAELKGMSCTTFLITQKISSTVSADLIL 539 RL+IARALVRKP +L+LDDSTSALD TE++LL L+ + TT +ITQKIS+ + +D IL Sbjct: 478 RLSIARALVRKPKILLLDDSTSALDLKTEAKLLQALRTYTATTLIITQKISTAIESDHIL 537 Query: 540 LLDEGRLIAQGTHEELMERSELYRKINESQH-REGVQHVQ 578 LL++GRLIA+G HE L+ SELY+KI SQ E ++HVQ Sbjct: 538 LLEDGRLIAEGDHETLLRESELYQKIFRSQFGEEALEHVQ 577 >A6CMR5.1 A6CMR5_9BACI Putative uncharacterized protein Length = 580 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 271/582 (46%), Positives = 384/582 (65%), Gaps = 5/582 (0%) Query: 1 MNIIFSYLKTYRXXXXXXXXXXXXXXXXELSQPLLISRIIDDGIRAQDNRIVWLWGGVLV 60 M + S+LK YR EL PL ++++ID+GI D VW WGG++ Sbjct: 1 MKKMLSFLKNYRLSMGIAWTLMLIELAVELLLPLFMAKVIDEGILQGDMAAVWYWGGIMS 60 Query: 61 VSAVLAFIAGVLSSFFASHASQGFAFDLRDQLYEKVQSFTYAVFSRFTTSSLITRLTADV 120 V A+ AF +GV +SFFA+H SQG +D+R LYEK+Q+F+++ FS++ +SSLITRLT DV Sbjct: 61 VLALAAFASGVTNSFFAAHVSQGAGYDIRKSLYEKIQNFSFSNFSKYPSSSLITRLTNDV 120 Query: 121 SQLQDTIFMGLRFMTRVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVMKKASVL 180 +Q+Q+TIF LR M R P WV+ + Sbjct: 121 TQVQNTIFTSLRIMMRAPLLVIGGTIMALIVDVKLGIILLVVIPFIVVFLLWVLNTGWTM 180 Query: 181 FRSVQNRLDGVNSVIQENLTGIRLIRVFVRMNHEIARFAAFSGELMKSTVAALRLTETSA 240 F+ VQ +LD VN VIQENL G+R+I+ +R +HE RF + LMK TV+ALRL ET Sbjct: 181 FKYVQQKLDSVNDVIQENLKGMRIIKALLRGSHENGRFIEANKTLMKKTVSALRLMETIM 240 Query: 241 PLIMLIVNAGIMLVLWFGRIEISTGEATLGQTVAVINYSLRTIGALSALSWIMATFSRAR 300 P++ +++N I+ +LW G +E + G A +G VA++NY+ R GA S ++I+ +FSRAR Sbjct: 241 PVLFIVMNGSILFILWIGNMEAANGNAAVGDVVAIVNYATRITGAFSVFAFIIMSFSRAR 300 Query: 301 ASSQRIQEVMSAD-ELEAKEMAAVTAREIAPIRGKVEFRQVSFRYPQSDIAVLEDITFKV 359 AS+ RI EV+ D +L E + + + GK+EF VSF YP + VL++I KV Sbjct: 301 ASAGRISEVLETDIDLVDSEDSDTS---LTVTEGKIEFIDVSFHYPGTKTEVLDEINLKV 357 Query: 360 QPGDRVAIMGATGSGKSSLVGLIPRLYEQSSGDILVDGIPGAEMEISRLRGAIGYVPQEV 419 +P + V+I+GATGSGK+SL LIPRLYE + G+IL+DG+ + ++ LR +IG+VPQE Sbjct: 358 EPKEVVSILGATGSGKTSLFQLIPRLYEATGGNILIDGVEIKKYKLENLRKSIGFVPQEA 417 Query: 420 LLFTGSVRENIAWGHPQATQDEIEQAAMAAQIHETVQELPNGYDTMLGQRGVNLSGGQKQ 479 LLF+GS++ENIAWG A+ DEI +AA +AQIH+ ++ LPNGYDT+LGQ+GVNLSGGQKQ Sbjct: 418 LLFSGSIKENIAWGKEDASMDEIVEAARSAQIHDLIEGLPNGYDTVLGQKGVNLSGGQKQ 477 Query: 480 RLTIARALVRKPAVLILDDSTSALDAVTESRLLAELKGMSCTTFLITQKISSTVSADLIL 539 RL+IARALVRKP +LILDDSTSALD TES+L+ + SCT ++TQKIS+ + +D I Sbjct: 478 RLSIARALVRKPKILILDDSTSALDLKTESKLIGAIGDYSCTILIVTQKISTAIQSDKIF 537 Query: 540 LLDEGRLIAQGTHEELMERSELYRKINESQH-REGVQHVQSI 580 L+++G++IA+G HE+L+ S LY KI +SQ E ++H +++ Sbjct: 538 LIEDGKVIAEGCHEQLITDSPLYGKIFQSQFGEENLEHAKAL 579 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,615,497,763 Number of extensions: 93339825 Number of successful extensions: 685318 Number of sequences better than 1.0e-05: 81518 Number of HSP's gapped: 598230 Number of HSP's successfully gapped: 87547 Length of query: 581 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 440 Effective length of database: 1,732,333,088 Effective search space: 762226558720 Effective search space used: 762226558720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)