BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0119.0002.p (172 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DKB1.1 B1DKB1_9BACL IG hypothetical 18565 178 2e-43 C0ZG25.1 C0ZG25_BREBN Putative uncharacterized protein 173 5e-42 C2YTN8.1 C2YTN8_BACCE Putative uncharacterized protein 168 2e-40 C3H1R3.1 C3H1R3_BACTU Putative uncharacterized protein 168 2e-40 Q4MXB1.1 Q4MXB1_BACCE Putative uncharacterized protein 167 3e-40 >B1DKB1.1 B1DKB1_9BACL IG hypothetical 18565 Length = 172 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/172 (48%), Positives = 121/172 (70%), Gaps = 1/172 (0%) Query: 1 MNQRPQPGEYSEFPARYISLVPPEGELAAVLREQSNLMYDLLDGLSEEQGSYRYAKGKWS 60 M +RPQ EY+EF RYI LVP EG L A+L EQ + LS EQ YRY +GKWS Sbjct: 1 MLERPQASEYNEFFTRYIGLVP-EGNLIALLEEQQAETNRIYSALSAEQADYRYGEGKWS 59 Query: 61 IKQMLGHLTDNDRIMSYRLLAIARGEKAPLPGYEENDYAAAGEFERFTLSEMVQHYKLVR 120 +K++LGH+TD +RIMSYRLL IARG++ PLPG++++ Y F T+++++++Y VR Sbjct: 60 LKEVLGHVTDTERIMSYRLLRIARGDQTPLPGFDQDAYMEGSPFSGLTVTDLLENYNAVR 119 Query: 121 QSTIALLESLPEEAWTRMGAASGNPISVRAVACVIIGHELHHLGVLKERYLK 172 +TI LL+ L EA+TR G A+ +P++ RA+A ++ GHE +HL +++ERYL Sbjct: 120 HATIVLLKQLSAEAFTRSGFANQSPLTARAIAYIMYGHERNHLSIVQERYLN 171 >C0ZG25.1 C0ZG25_BREBN Putative uncharacterized protein Length = 171 Score = 173 bits (439), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 86/171 (50%), Positives = 117/171 (68%), Gaps = 1/171 (0%) Query: 1 MNQRPQPGEYSEFPARYISLVPPEGELAAVLREQSNLMYDLLDGLSEEQGSYRYAKGKWS 60 M +RP+ EY+ + Y+ LVP EGEL +L +Q + L L+ EQ YRYA GKW+ Sbjct: 1 MLRRPERDEYAAYFDYYMGLVP-EGELQTILTQQGERIVALFSSLAPEQIDYRYAPGKWT 59 Query: 61 IKQMLGHLTDNDRIMSYRLLAIARGEKAPLPGYEENDYAAAGEFERFTLSEMVQHYKLVR 120 +K++LGHL D +RIMSYRLL IARG++ PL G++EN + G F+ LS++++ YK VR Sbjct: 60 VKEVLGHLIDAERIMSYRLLRIARGDQTPLVGFDENAFVEHGCFQLRDLSDLLEEYKAVR 119 Query: 121 QSTIALLESLPEEAWTRMGAASGNPISVRAVACVIIGHELHHLGVLKERYL 171 STIAL+ + EAW R G A+GN +S R +A VI+GHE HH +LKERYL Sbjct: 120 ASTIALVRGISPEAWLRTGLANGNKLSARTLAYVIVGHEAHHTRILKERYL 170 >C2YTN8.1 C2YTN8_BACCE Putative uncharacterized protein Length = 169 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 82/171 (47%), Positives = 116/171 (67%), Gaps = 3/171 (1%) Query: 1 MNQRPQPGEYSEFPARYISLVPPEGELAAVLREQSNLMYDLLDGLSEEQGSYRYAKGKWS 60 MNQRP EY+ YI LVP +G + +L Q M +LL L+E QG+YRYA+GKW+ Sbjct: 1 MNQRPSEEEYAGNSGEYIRLVP-DGNIIDILFAQEKQMTELLASLTESQGTYRYAEGKWT 59 Query: 61 IKQMLGHLTDNDRIMSYRLLAIARGEKAPLPGYEENDYAAAGEFERFTLSEMVQHYKLVR 120 +K+++GH+ D +R+M+YRLL ARG++ PL G+++ + F +T ++ + Y+ VR Sbjct: 60 LKEVVGHIADAERVMTYRLLRFARGDQTPLTGFDQELFMPP--FGSWTTEQLAEDYRAVR 117 Query: 121 QSTIALLESLPEEAWTRMGAASGNPISVRAVACVIIGHELHHLGVLKERYL 171 QSTI LL LP EAWTR G A+ I+VRA+A I GHELHH+GV++ RYL Sbjct: 118 QSTITLLRGLPAEAWTRKGTANELSITVRALAYGIAGHELHHMGVIRNRYL 168 >C3H1R3.1 C3H1R3_BACTU Putative uncharacterized protein Length = 181 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/171 (46%), Positives = 121/171 (70%), Gaps = 1/171 (0%) Query: 1 MNQRPQPGEYSEFPARYISLVPPEGELAAVLREQSNLMYDLLDGLSEEQGSYRYAKGKWS 60 M RPQ EY+ + A Y +LV +G + +L +Q LL G+S+ +G +RYA KWS Sbjct: 4 MQIRPQVSEYNSYYATYTNLVS-DGNIIHILEQQMKETNLLLKGISDSEGLFRYAPTKWS 62 Query: 61 IKQMLGHLTDNDRIMSYRLLAIARGEKAPLPGYEENDYAAAGEFERFTLSEMVQHYKLVR 120 IK+++GH+ D +RIM+YRLL+IARGE A LPGY ++ Y F++ ++ +++++ +VR Sbjct: 63 IKEVMGHIADTERIMAYRLLSIARGETAELPGYNDDMYVLRAAFDKQSMQDLLENLIVVR 122 Query: 121 QSTIALLESLPEEAWTRMGAASGNPISVRAVACVIIGHELHHLGVLKERYL 171 QST+ LL SL +EAW++ G A+ + ++VRA+A +I GHELHHL ++KERYL Sbjct: 123 QSTLHLLRSLDKEAWSQRGNANNSEVTVRALAYIIAGHELHHLQIIKERYL 173 >Q4MXB1.1 Q4MXB1_BACCE Putative uncharacterized protein Length = 169 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 81/171 (47%), Positives = 116/171 (67%), Gaps = 3/171 (1%) Query: 1 MNQRPQPGEYSEFPARYISLVPPEGELAAVLREQSNLMYDLLDGLSEEQGSYRYAKGKWS 60 MNQRP EY+ YI LVP +G + +L Q M +LL L+E Q +YRYA+GKW+ Sbjct: 1 MNQRPSEEEYAGNSGEYIRLVP-DGNIIDILFAQEKQMTELLASLTESQAAYRYAEGKWT 59 Query: 61 IKQMLGHLTDNDRIMSYRLLAIARGEKAPLPGYEENDYAAAGEFERFTLSEMVQHYKLVR 120 +K+++GH+TD +R+M+YRLL ARG++ PL G+++ + F +T ++ + Y+ VR Sbjct: 60 LKEVVGHITDAERVMTYRLLRFARGDQTPLTGFDQELFIPP--FGSWTTGQLAEDYRAVR 117 Query: 121 QSTIALLESLPEEAWTRMGAASGNPISVRAVACVIIGHELHHLGVLKERYL 171 +STI LL LP EAWTR G A+ I+VRA+A I GHELHH+GV++ RYL Sbjct: 118 ESTITLLRGLPAEAWTRKGTANNLSITVRALAYGIAGHELHHMGVIRNRYL 168 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,069,043,131 Number of extensions: 41433557 Number of successful extensions: 96462 Number of sequences better than 1.0e-05: 155 Number of HSP's gapped: 96343 Number of HSP's successfully gapped: 155 Length of query: 172 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 46 Effective length of database: 1,873,648,313 Effective search space: 86187822398 Effective search space used: 86187822398 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)