BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0118.0006.p (201 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA34.1 B3KA34_9BACI Phosphatidylglycerophosphatase A 273 9e-72 B1DDV3.1 B1DDV3_9BACL Phosphatidylglycerophosphatase A 243 5e-63 A6CRV3.1 A6CRV3_9BACI Putative uncharacterized protein 212 2e-53 Q2B215.1 Q2B215_9BACI Putative uncharacterized protein 208 2e-52 Q65FB9.1 Q65FB9_BACLD YutG 207 4e-52 >B3KA34.1 B3KA34_9BACI Phosphatidylglycerophosphatase A Length = 228 Score = 273 bits (697), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 130/177 (73%), Positives = 150/177 (84%) Query: 1 MADANAKIPYSLNSKKVAEATTFWLHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVE 60 MA+ ++ IPYSLNSKKVAEAT LHKRG+ LEEIAELV++LQKKYYP LTMEEC+ NV+ Sbjct: 42 MAENDSNIPYSLNSKKVAEATRSLLHKRGIKLEEIAELVMILQKKYYPNLTMEECIENVD 101 Query: 61 MVLSKREVQNAVLTGIQLDVLAEEGKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIG 120 VLSKREVQNAVLTGIQLD+LAEEG L+SPLQEM+ NDE LYGVDE+LAFSIVNVYGSIG Sbjct: 102 AVLSKREVQNAVLTGIQLDILAEEGNLISPLQEMLANDEGLYGVDEVLAFSIVNVYGSIG 161 Query: 121 FTNYGYVDKLKPGVLERLNDKSTGQIHTYLDDXXXXXXXXXXXXXXHRKQAEREQEL 177 FTNYGY+DKLKPG+LE+LNDKS+G++HT+LDD HRKQA+RE EL Sbjct: 162 FTNYGYIDKLKPGILEQLNDKSSGRVHTFLDDIVGAVAAAASSRIAHRKQADREIEL 218 >B1DDV3.1 B1DDV3_9BACL Phosphatidylglycerophosphatase A Length = 179 Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 116/170 (68%), Positives = 137/170 (80%) Query: 7 KIPYSLNSKKVAEATTFWLHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVEMVLSKR 66 ++ YSLNS++VAEAT WL KRGV+ IA+LV LQK YYP LT++EC+ NVE VLSKR Sbjct: 4 QVTYSLNSREVAEATNEWLDKRGVSKTSIAQLVHFLQKDYYPELTLDECITNVEAVLSKR 63 Query: 67 EVQNAVLTGIQLDVLAEEGKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIGFTNYGY 126 EVQNAVLTGIQLD+LAEEGKL++PLQEM+ NDE LYG DEILA SIVNVYGSIGFTN+GY Sbjct: 64 EVQNAVLTGIQLDLLAEEGKLMAPLQEMVRNDEGLYGCDEILALSIVNVYGSIGFTNFGY 123 Query: 127 VDKLKPGVLERLNDKSTGQIHTYLDDXXXXXXXXXXXXXXHRKQAEREQE 176 +DKLKPG+L++LNDK+ GQIHT+LDD HRKQA RE+E Sbjct: 124 IDKLKPGILKKLNDKNDGQIHTFLDDIVGAIAAAAASRLAHRKQAGREEE 173 >A6CRV3.1 A6CRV3_9BACI Putative uncharacterized protein Length = 177 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 103/156 (66%), Positives = 122/156 (78%), Gaps = 1/156 (0%) Query: 14 SKKVAEATTF-WLHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVEMVLSKREVQNAV 72 SKK++E T WLH+RGV +++IAELVL LQKKY+P L +EEC +N+E VLSKREVQNA+ Sbjct: 16 SKKLSEETARRWLHERGVEIDDIAELVLFLQKKYHPNLGIEECRNNIERVLSKREVQNAI 75 Query: 73 LTGIQLDVLAEEGKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIGFTNYGYVDKLKP 132 LTGIQLD LAE+G L PLQ +IE DE LYGVDEILAFSIVNVYGSIGFTNYGY+DK KP Sbjct: 76 LTGIQLDRLAEKGMLEEPLQSIIEVDEGLYGVDEILAFSIVNVYGSIGFTNYGYIDKQKP 135 Query: 133 GVLERLNDKSTGQIHTYLDDXXXXXXXXXXXXXXHR 168 G+LE+LNDKS+ + HT+LDD HR Sbjct: 136 GILEKLNDKSSNKCHTFLDDIVGAIAAAASSRLAHR 171 >Q2B215.1 Q2B215_9BACI Putative uncharacterized protein Length = 168 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 94/129 (72%), Positives = 116/129 (89%) Query: 24 WLHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVEMVLSKREVQNAVLTGIQLDVLAE 83 WL +RGVT+++IA+LV LQ+KY+P L M++C+HNVE VLSKREVQNA+LTGIQLD+L E Sbjct: 19 WLLERGVTVQDIADLVFFLQEKYHPNLEMKDCLHNVERVLSKREVQNAILTGIQLDMLGE 78 Query: 84 EGKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIGFTNYGYVDKLKPGVLERLNDKST 143 +G L PLQ++IE DESLYGVDE+LAFSIVNVYGSIGFTNYGY+DKLKPG+L+ LNDKS+ Sbjct: 79 KGMLDQPLQKIIETDESLYGVDEVLAFSIVNVYGSIGFTNYGYIDKLKPGILKDLNDKSS 138 Query: 144 GQIHTYLDD 152 G+ HT+LDD Sbjct: 139 GKCHTFLDD 147 >Q65FB9.1 Q65FB9_BACLD YutG Length = 166 Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 101/166 (60%), Positives = 123/166 (74%), Gaps = 1/166 (0%) Query: 8 IPYSLNSKKVAEATTFWLHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVEMVLSKRE 67 +P + + ++ A WL KRGV + EIA+LV +LQKKY+P LT EEC NV V+ KRE Sbjct: 1 MPENNSMHQIETAAKEWLEKRGVKISEIADLVYVLQKKYHPNLTKEECEENVNRVMKKRE 60 Query: 68 VQNAVLTGIQLDVLAEEGKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIGFTNYGYV 127 VQNAV+TGIQLD+L E+ KL+ PLQ +IE DESLYGVDEIL+FSIVN+YGSIG+TNYGY+ Sbjct: 61 VQNAVITGIQLDMLGEQRKLMEPLQTLIETDESLYGVDEILSFSIVNLYGSIGYTNYGYI 120 Query: 128 DKLKPGVLERLNDKSTGQIHTYLDDXXXXXXXXXXXXXXHR-KQAE 172 DK+KPGVL RLNDKSTG+ HT+LDD HR K AE Sbjct: 121 DKIKPGVLARLNDKSTGECHTFLDDIVGAIAAAASSRLAHRAKDAE 166 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,054,118,919 Number of extensions: 38116879 Number of successful extensions: 78204 Number of sequences better than 1.0e-05: 206 Number of HSP's gapped: 78193 Number of HSP's successfully gapped: 206 Length of query: 201 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 72 Effective length of database: 1,845,385,268 Effective search space: 132867739296 Effective search space used: 132867739296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)