BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0014.p (330 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K492.1 B3K492_9BACI Binding-protein-dependent transport system... 479 e-133 A4XMJ2.1 A4XMJ2_CALS8 Binding-protein-dependent transport system... 370 e-100 B9MLN7.1 B9MLN7_ANATD Binding-protein-dependent transport system... 368 e-100 A9KLB7.1 A9KLB7_CLOPH Binding-protein-dependent transport system... 355 3e-96 B3K3C6.1 B3K3C6_9BACI Binding-protein-dependent transport system... 280 2e-73 >B3K492.1 B3K492_9BACI Binding-protein-dependent transport systems inner membrane component Length = 331 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 231/325 (71%), Positives = 271/325 (83%), Gaps = 3/325 (0%) Query: 6 SSTEANPAMKPLLSPKIETGPGPKSPLWRRLLAQRHLQTMALLGVVWMIIFNYIPMYGLI 65 S T P+M+P + K + + R+L QRHLQ MALLGVVWMIIFNYIPMYG+I Sbjct: 10 SETGVGPSMEPSVQDKRKL---DRKRWLRKLYGQRHLQIMALLGVVWMIIFNYIPMYGVI 66 Query: 66 ISFKEYNIVRSIAEAPWVGLEHFREFLDDEDLVNVIKNTLGISLIKLLIGFPLPIIFALF 125 I+FKE+NIV+SI EAPWVGL HF+EF DED NV++NTLGISL+KL IGFPLPIIFALF Sbjct: 67 IAFKEFNIVKSIGEAPWVGLAHFKEFFSDEDFTNVMRNTLGISLLKLFIGFPLPIIFALF 126 Query: 126 LNEIRSLRYKKAIQTISYLPHFLSWVVLGGILATWLADVGIVNNILLSLHLIDQPITYLA 185 LNEIRS+RYK+ IQTISYLPHFLSWV+LGGIL TWLAD+GI+NNILL+LH+ID+PITYLA Sbjct: 127 LNEIRSVRYKRTIQTISYLPHFLSWVILGGILMTWLADIGIINNILLALHIIDEPITYLA 186 Query: 186 EPSYFWTIIISSDIWKELGWSAIIYLAAISGVSPEMYEAATIDGAGRFQKMWFVTLPAIK 245 EP YFW III+SDIWKELGWSAIIYLAAI+ +SPEMYEA+TIDGAGRFQKMW++TLP+IK Sbjct: 187 EPKYFWGIIITSDIWKELGWSAIIYLAAIASISPEMYEASTIDGAGRFQKMWYITLPSIK 246 Query: 246 STISILFILAVSGVLNSNFDQILVLRNSLNDSASNVIDYYIYYTGIVSNRFSYSXXXXXX 305 STISILFILAV GVLNSNFDQILVLRNSLN+SASNVID ++Y+TG+ + R+SY+ Sbjct: 247 STISILFILAVGGVLNSNFDQILVLRNSLNESASNVIDIFVYHTGMQNGRYSYAQAVALF 306 Query: 306 XXXXXXXXXXXXNQVSKKINDTSLF 330 N+V+KK+NDTSLF Sbjct: 307 KSVIAIILLLIANRVTKKLNDTSLF 331 >A4XMJ2.1 A4XMJ2_CALS8 Binding-protein-dependent transport systems inner membrane component Length = 318 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/304 (58%), Positives = 229/304 (75%), Gaps = 3/304 (0%) Query: 30 SPLWR---RLLAQRHLQTMALLGVVWMIIFNYIPMYGLIISFKEYNIVRSIAEAPWVGLE 86 SP R +L Q++LQ MA+ GV+WMIIF YIPMYG+II+FKEY+I I ++PWVGL Sbjct: 15 SPFRRFLHKLNEQKYLQAMAIPGVIWMIIFCYIPMYGIIIAFKEYDITLGINKSPWVGLA 74 Query: 87 HFREFLDDEDLVNVIKNTLGISLIKLLIGFPLPIIFALFLNEIRSLRYKKAIQTISYLPH 146 +F+EF DE +IKNT+GIS KLL+GFPLPI+FA+ LNE+ S+R+K+ +QTISYLPH Sbjct: 75 NFKEFFSDERFWLIIKNTVGISFFKLLVGFPLPILFAVLLNELTSVRFKRTVQTISYLPH 134 Query: 147 FLSWVVLGGILATWLADVGIVNNILLSLHLIDQPITYLAEPSYFWTIIISSDIWKELGWS 206 F+SWVVLGGIL WL++ G++N IL L ++ QPIT+LAEP YFW I + S++WKELGW+ Sbjct: 135 FISWVVLGGILMNWLSETGLINIILTKLGILKQPITFLAEPKYFWGIAVISEVWKELGWN 194 Query: 207 AIIYLAAISGVSPEMYEAATIDGAGRFQKMWFVTLPAIKSTISILFILAVSGVLNSNFDQ 266 AIIYLAAI+G+ PE+YEAAT+DGAGR KM+ +T+P I TI+I+FILAVSG++NSNFDQ Sbjct: 195 AIIYLAAIAGIDPELYEAATVDGAGRITKMFKITIPCISGTIAIMFILAVSGLMNSNFDQ 254 Query: 267 ILVLRNSLNDSASNVIDYYIYYTGIVSNRFSYSXXXXXXXXXXXXXXXXXXNQVSKKIND 326 I VLRN LN AS+VID Y+Y GI + RFSY+ N V+KK+ D Sbjct: 255 IFVLRNPLNADASDVIDIYVYKMGIEAFRFSYATAIGLFKSIIALILLLLANGVTKKLTD 314 Query: 327 TSLF 330 SLF Sbjct: 315 KSLF 318 >B9MLN7.1 B9MLN7_ANATD Binding-protein-dependent transport systems inner membrane component Length = 318 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/297 (58%), Positives = 225/297 (75%) Query: 34 RRLLAQRHLQTMALLGVVWMIIFNYIPMYGLIISFKEYNIVRSIAEAPWVGLEHFREFLD 93 +L Q++LQ MA+ GV+WMIIFNYIPMYG+II+FKEY+I ++PWVGL +F+EF Sbjct: 22 HKLNEQKYLQAMAIPGVIWMIIFNYIPMYGIIIAFKEYDITLGFNKSPWVGLANFKEFFA 81 Query: 94 DEDLVNVIKNTLGISLIKLLIGFPLPIIFALFLNEIRSLRYKKAIQTISYLPHFLSWVVL 153 DE +IKNT+GIS KLL+GFPLPI+FA+ LNE+ S+R+K+ +QTISYLPHF+SWVVL Sbjct: 82 DERFWLIIKNTVGISFFKLLVGFPLPILFAVLLNELVSVRFKRTVQTISYLPHFISWVVL 141 Query: 154 GGILATWLADVGIVNNILLSLHLIDQPITYLAEPSYFWTIIISSDIWKELGWSAIIYLAA 213 GGIL WL++ G++N IL + ++ QPI +LAEP YFW I + S++WKELGW+AIIYLAA Sbjct: 142 GGILMNWLSETGLINIILTKIGILKQPIAFLAEPKYFWGITVVSEVWKELGWNAIIYLAA 201 Query: 214 ISGVSPEMYEAATIDGAGRFQKMWFVTLPAIKSTISILFILAVSGVLNSNFDQILVLRNS 273 I+G+ PE+YEAAT+DGAGRF KM+ +T+P I TI+I+FILAVSG++NSNFDQI VLRN Sbjct: 202 IAGIDPELYEAATVDGAGRFTKMFKITIPCISGTIAIMFILAVSGLMNSNFDQIFVLRNP 261 Query: 274 LNDSASNVIDYYIYYTGIVSNRFSYSXXXXXXXXXXXXXXXXXXNQVSKKINDTSLF 330 LN AS+VID Y+Y GI + RFSY+ N V+KK+ SLF Sbjct: 262 LNADASDVIDIYVYRMGIEAFRFSYATAIGLFKSIIALMLLLTANGVTKKLTGKSLF 318 >A9KLB7.1 A9KLB7_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 313 Score = 355 bits (912), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 167/302 (55%), Positives = 224/302 (74%) Query: 29 KSPLWRRLLAQRHLQTMALLGVVWMIIFNYIPMYGLIISFKEYNIVRSIAEAPWVGLEHF 88 KS RRL+ Q++LQ M + G++WM+IFNYIPM G+II+FK++ I +SIAEAPWVGL++F Sbjct: 12 KSVTMRRLMNQKYLQLMVIPGIIWMLIFNYIPMGGIIIAFKKFKITKSIAEAPWVGLKYF 71 Query: 89 REFLDDEDLVNVIKNTLGISLIKLLIGFPLPIIFALFLNEIRSLRYKKAIQTISYLPHFL 148 EF D + N++ NTLGISL+KL+IGFPLPIIFAL +NEIR+L++KK QTISYLPHFL Sbjct: 72 EEFFQDSNFSNIMVNTLGISLLKLIIGFPLPIIFALLINEIRNLKFKKITQTISYLPHFL 131 Query: 149 SWVVLGGILATWLADVGIVNNILLSLHLIDQPITYLAEPSYFWTIIISSDIWKELGWSAI 208 SWVVLGGIL TWL G++N + +LH+ P++YL +P YFW + + SD WKELGWSAI Sbjct: 132 SWVVLGGILTTWLNSTGVINVLFQALHITSGPVSYLGDPKYFWGVALVSDSWKELGWSAI 191 Query: 209 IYLAAISGVSPEMYEAATIDGAGRFQKMWFVTLPAIKSTISILFILAVSGVLNSNFDQIL 268 IYLAAIS V ++YEAAT+DGA + QK++ +TLP+IK TI+I+ IL VSG+LN+NFDQI+ Sbjct: 192 IYLAAISSVDQQLYEAATVDGATKIQKIFKITLPSIKGTIAIMLILQVSGLLNANFDQIM 251 Query: 269 VLRNSLNDSASNVIDYYIYYTGIVSNRFSYSXXXXXXXXXXXXXXXXXXNQVSKKINDTS 328 +L+N +N S S VID Y+Y G+ ++SY+ N SK++ S Sbjct: 252 ILKNQINISRSQVIDTYVYQVGMSLGKYSYATAVSLFKSVIALFLLLIANFSSKRLLGRS 311 Query: 329 LF 330 L+ Sbjct: 312 LY 313 >B3K3C6.1 B3K3C6_9BACI Binding-protein-dependent transport systems inner membrane component Length = 329 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 142/316 (44%), Positives = 196/316 (62%), Gaps = 12/316 (3%) Query: 23 ETGPGPKSPLWRRLLAQR------------HLQTMALLGVVWMIIFNYIPMYGLIISFKE 70 TG G P ++ + QR LQ+M + GV++M IF YIP+YGL I+FK Sbjct: 9 STGTGAVQPTGKKPMGQRIKEFFMDYKRQWELQSMIIPGVIFMFIFCYIPIYGLTIAFKN 68 Query: 71 YNIVRSIAEAPWVGLEHFREFLDDEDLVNVIKNTLGISLIKLLIGFPLPIIFALFLNEIR 130 Y ++ ++ APWVGL++F+ + D+ + + NTLGIS +KL IGF +PII A+ + E+ Sbjct: 69 YTVIDTLDSAPWVGLDNFKIIMSDKYFWDSVVNTLGISFLKLAIGFVIPIILAIMIYEVG 128 Query: 131 SLRYKKAIQTISYLPHFLSWVVLGGILATWLADVGIVNNILLSLHLIDQPITYLAEPSYF 190 R+KK +QT+SYLPHFLSW+VLGG+L TW + G+ N ILL+L LI QP L +PS + Sbjct: 129 MGRFKKFVQTVSYLPHFLSWIVLGGMLITWFSTSGLFNEILLALGLISQPQNILLDPSKY 188 Query: 191 WTIIISSDIWKELGWSAIIYLAAISGVSPEMYEAATIDGAGRFQKMWFVTLPAIKSTISI 250 W I SDIWKE GW I+YLA ++ + P YEAA IDGA R +++W +TLP +K IS+ Sbjct: 189 WWIATLSDIWKEAGWGTILYLAIMAKIDPTYYEAARIDGASRLRQIWNITLPNMKMIISL 248 Query: 251 LFILAVSGVLNSNFDQILVLRNSLNDSASNVIDYYIYYTGIVSNRFSYSXXXXXXXXXXX 310 IL VSG+L SN DQ LVL NS N + VI+ Y+Y G+ FSY+ Sbjct: 249 NLILTVSGLLGSNLDQTLVLMNSQNREKAEVINSYVYRMGMTQGDFSYATAVGLGVSIIS 308 Query: 311 XXXXXXXNQVSKKIND 326 N+V+ K+ND Sbjct: 309 VILLVTANKVTSKLND 324 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.140 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,879,838,912 Number of extensions: 77730611 Number of successful extensions: 221791 Number of sequences better than 1.0e-05: 4975 Number of HSP's gapped: 219532 Number of HSP's successfully gapped: 4975 Length of query: 330 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 194 Effective length of database: 1,779,438,163 Effective search space: 345211003622 Effective search space used: 345211003622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)