BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0013.p (296 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K493.1 B3K493_9BACI Binding-protein-dependent transport system... 506 e-141 A4XMJ1.1 A4XMJ1_CALS8 Binding-protein-dependent transport system... 389 e-106 B9MLN8.1 B9MLN8_ANATD Binding-protein-dependent transport system... 379 e-103 A9KLB8.1 A9KLB8_CLOPH Binding-protein-dependent transport system... 362 2e-98 B3K3C7.1 B3K3C7_9BACI Binding-protein-dependent transport system... 291 6e-77 >B3K493.1 B3K493_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 244/293 (83%), Positives = 269/293 (91%), Gaps = 1/293 (0%) Query: 4 LKRKTKGEALFDIANNLIMLCVCFLTLYPIWYVLVNAFNDGNDAMQGGIYWWPRVFSLKN 63 LKR+TKGEA FDI NN ML VCFLT+YPIWYVLVNAFNDG DAM+GGIYWWPR+FSL+N Sbjct: 2 LKRRTKGEAFFDIFNNFGMLIVCFLTIYPIWYVLVNAFNDGQDAMRGGIYWWPRMFSLEN 61 Query: 64 FDAVFASPGIMQAMGVTVAKTVLGVFVHVFFTAMVAYALSRKGLIGGKFYILLGTITLFF 123 F AVF S GIM AMG+TVAKTV+GVF+HV FTAMVAYA SRKGLIGGKFYILLGT+T+FF Sbjct: 62 FSAVFQSSGIMTAMGITVAKTVIGVFIHVLFTAMVAYAFSRKGLIGGKFYILLGTVTMFF 121 Query: 124 NGGLIPTFLLNRDLHLLDNFLVYIIPVMFSFFDLIIFMTFFREIPEGLEEAARIDGANDW 183 GGLIPT+LL +DL++LD+FLVYIIP MFSFFDLIIFMTFFREIP+GLEEAA+IDGANDW Sbjct: 122 TGGLIPTYLLIKDLNMLDSFLVYIIPFMFSFFDLIIFMTFFREIPDGLEEAAKIDGANDW 181 Query: 184 SIFLRVVLPVSMPVIATIALFHGVYQWNDYFAGIIYVNNPDLQPIQTYLFRVVAQSSSNQ 243 SIFLRVVLPVSMPVIATIALFHGV+QWNDYF G+IY+NN DLQPIQTYL++VVAQSSSNQ Sbjct: 182 SIFLRVVLPVSMPVIATIALFHGVFQWNDYFTGVIYINNTDLQPIQTYLYKVVAQSSSNQ 241 Query: 244 MMVAVQGSSLTKSVTSQSIKLATMVVTTLPIVFVYPFLQRYFVKGMMIGSIKG 296 MM V G + K+VTSQSIK+ATMVVTT PIVFVYPFLQRYFVKGMMIGSIKG Sbjct: 242 MMAQVPG-GVAKTVTSQSIKMATMVVTTAPIVFVYPFLQRYFVKGMMIGSIKG 293 >A4XMJ1.1 A4XMJ1_CALS8 Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 183/291 (62%), Positives = 238/291 (81%) Query: 6 RKTKGEALFDIANNLIMLCVCFLTLYPIWYVLVNAFNDGNDAMQGGIYWWPRVFSLKNFD 65 + + G+ +FDI N +ML +CF+TLYPIWY++V +FNDG DAM GGIY+WPR F+L N+ Sbjct: 4 KASLGDKIFDIFNITLMLIICFVTLYPIWYIIVYSFNDGKDAMLGGIYFWPRKFTLDNYI 63 Query: 66 AVFASPGIMQAMGVTVAKTVLGVFVHVFFTAMVAYALSRKGLIGGKFYILLGTITLFFNG 125 VF++ I A VT+A+TV+ +HVFFTAMVAYA +K LIG K Y+ +GTITLFF G Sbjct: 64 TVFSNSDITTAFMVTIARTVITTTLHVFFTAMVAYAFMKKELIGRKIYMTMGTITLFFGG 123 Query: 126 GLIPTFLLNRDLHLLDNFLVYIIPVMFSFFDLIIFMTFFREIPEGLEEAARIDGANDWSI 185 GLIP FLL + L L +NFLVY+IP MF+F++LIIF FFRE+P LEE+A+IDGAND++I Sbjct: 124 GLIPYFLLIKSLGLYNNFLVYVIPGMFNFYNLIIFQAFFRELPVELEESAKIDGANDFTI 183 Query: 186 FLRVVLPVSMPVIATIALFHGVYQWNDYFAGIIYVNNPDLQPIQTYLFRVVAQSSSNQMM 245 F RV+LP+S PV+ATIALF GVY WNDYF G+I++NNP LQPIQT+L++V+A+++SNQM+ Sbjct: 184 FTRVILPLSTPVLATIALFVGVYNWNDYFMGVIFINNPKLQPIQTFLYKVIAETTSNQML 243 Query: 246 VAVQGSSLTKSVTSQSIKLATMVVTTLPIVFVYPFLQRYFVKGMMIGSIKG 296 G +T++VTSQSIK+ATMVVTTLPIV VYPFLQ+YFVKG++IG+IKG Sbjct: 244 ANAPGGIMTRNVTSQSIKMATMVVTTLPIVCVYPFLQKYFVKGLLIGAIKG 294 >B9MLN8.1 B9MLN8_ANATD Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/291 (61%), Positives = 233/291 (80%) Query: 6 RKTKGEALFDIANNLIMLCVCFLTLYPIWYVLVNAFNDGNDAMQGGIYWWPRVFSLKNFD 65 + + G+ +FDI N +ML +CFLTLYPIWY++V +FN+G DAM GGIY+WPR F+L N+ Sbjct: 4 KSSFGDKVFDIFNITLMLIICFLTLYPIWYIIVYSFNEGKDAMLGGIYFWPRKFTLDNYK 63 Query: 66 AVFASPGIMQAMGVTVAKTVLGVFVHVFFTAMVAYALSRKGLIGGKFYILLGTITLFFNG 125 VF++ I A VTVA+TV+ +HVFFTAMVAYA RK L+G K Y+ +GTITLFF G Sbjct: 64 TVFSNSDITTAFMVTVARTVITTTLHVFFTAMVAYAFLRKELLGRKIYMAMGTITLFFGG 123 Query: 126 GLIPTFLLNRDLHLLDNFLVYIIPVMFSFFDLIIFMTFFREIPEGLEEAARIDGANDWSI 185 GLIP FLL + L L + F VY+IP MF+F++LIIF FFRE+P LEE+A+IDGAND+ I Sbjct: 124 GLIPYFLLIKSLGLYNTFWVYVIPGMFNFYNLIIFQAFFRELPIELEESAKIDGANDFII 183 Query: 186 FLRVVLPVSMPVIATIALFHGVYQWNDYFAGIIYVNNPDLQPIQTYLFRVVAQSSSNQMM 245 F R++LP+S PV+ATIALF GVY WNDYF G+I++NNP LQPIQT+L++V+AQ +SNQM+ Sbjct: 184 FTRIILPLSTPVLATIALFVGVYNWNDYFMGVIFINNPKLQPIQTFLYKVIAQVTSNQML 243 Query: 246 VAVQGSSLTKSVTSQSIKLATMVVTTLPIVFVYPFLQRYFVKGMMIGSIKG 296 G T++VTSQS+K+ATMV+TTLPIV VYPFLQ+YFVKG++IG+IKG Sbjct: 244 AYAPGGIATRNVTSQSLKMATMVITTLPIVCVYPFLQKYFVKGLLIGAIKG 294 >A9KLB8.1 A9KLB8_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 362 bits (930), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 176/292 (60%), Positives = 234/292 (80%), Gaps = 2/292 (0%) Query: 6 RKTKGEALFDIANNLIMLCVCFLTLYPIWYVLVNAFNDGNDAMQGGIYWWPRVFSLKNFD 65 +++KG +FDI N ++ML +CF+ +YPIWYV+VN+FND NDA+ GGIYWWPR FSL+N+ Sbjct: 10 KRSKGTLIFDILNTILMLFICFVCIYPIWYVIVNSFNDANDALMGGIYWWPRQFSLQNYK 69 Query: 66 AVFASPGIMQAMGVTVAKTVLGVFVHVFFTAMVAYALSRKGLIGGKFYILLGTITLFFNG 125 VF+ ++QA +T+AKT++G V+V FTAMVAY LS+K LIG KFY+ +GTIT+FF+G Sbjct: 70 TVFSDNSVLQAFKITIAKTLIGTTVNVLFTAMVAYPLSKKYLIGRKFYMAIGTITMFFSG 129 Query: 126 GLIPTFLLNRDLHLLDNFLVYIIPVMFSFFDLIIFMTFFREIPEGLEEAARIDGANDWSI 185 GLIPTFLL + L LL+NF VY+IP F+FF+L+I + FFREIP+ LEE+A+IDGAND++I Sbjct: 130 GLIPTFLLFKGLGLLNNFWVYVIPAAFNFFNLLIMINFFREIPDALEESAKIDGANDFTI 189 Query: 186 FLRVVLPVSMPVIATIALFHGVYQWNDYFAGIIYV-NNPDLQPIQTYLFRVVAQSSSNQM 244 F +V+LP+S PV+ATIALF GV QWNDYF G++Y+ +N L+PIQTYL+R+VAQ S+QM Sbjct: 190 FRKVILPLSKPVLATIALFAGVGQWNDYFGGLMYITDNRSLEPIQTYLYRLVAQVQSSQM 249 Query: 245 -MVAVQGSSLTKSVTSQSIKLATMVVTTLPIVFVYPFLQRYFVKGMMIGSIK 295 + K TS +IKLA MV+TTLPI VYPFLQ+YF+KGMMIG++K Sbjct: 250 ASSISASNISAKDSTSTAIKLAAMVITTLPICCVYPFLQKYFIKGMMIGAVK 301 >B3K3C7.1 B3K3C7_9BACI Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 291 bits (744), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 137/293 (46%), Positives = 203/293 (69%), Gaps = 6/293 (2%) Query: 6 RKTKGE---ALFDIANNLIMLCVCFLTLYPIWYVLVNAFNDGNDAMQGGIYWWPRVFSLK 62 + KG+ +FD N ++++ + + P+W V+V++F+ G +GG +WP FSL+ Sbjct: 4 KAAKGDLDSRIFDTINIILLVTFTIIIVVPLWNVVVSSFSSGRSLAEGGFIFWPTEFSLE 63 Query: 63 NFDAVFASPGIMQAMGVTVAKTVLGVFVHVFFTAMVAYALSRKGLIGGKFYILLGTITLF 122 N+ AVF I A ++VAKTV+GV HVFF AMV Y LS+K + G KFY+ +G +T+F Sbjct: 64 NYQAVFRDANIWNAFFISVAKTVIGVITHVFFCAMVGYGLSKKYVRGRKFYVAMGVVTMF 123 Query: 123 FNGGLIPTFLLNRDLHLLDNFLVYIIPVMFSFFDLIIFMTFFREIPEGLEEAARIDGAND 182 F+GG+IPT++L +DL LL++F VYIIP + SF+D+II M FFR +P+ LEE+A+IDG D Sbjct: 124 FSGGMIPTYMLIKDLGLLNSFWVYIIPALLSFYDVIILMNFFRNVPDSLEESAKIDGGGD 183 Query: 183 WSIFLRVVLPVSMPVIATIALFHGVYQWNDYFAGIIYVNNPDLQPIQTYLFRVVAQSSSN 242 W IFL + +P+SMP +ATIALF+GV QWND+ +Y+ + L P+Q L+ ++ QS + Sbjct: 184 WRIFLSIFIPLSMPAMATIALFNGVGQWNDFMTTKLYITDQSLYPLQMMLYEIIVQSQTQ 243 Query: 243 QMMVAVQGSSLTKSVTSQSIKLATMVVTTLPIVFVYPFLQRYFVKGMMIGSIK 295 M S+ T++ ++LAT+VVTTLPIV +YP LQRYF+ GMM+G++K Sbjct: 244 SMQ---NIGSVAIQTTTKGVQLATIVVTTLPIVVMYPILQRYFISGMMLGAVK 293 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.144 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,653,128,572 Number of extensions: 68186114 Number of successful extensions: 281002 Number of sequences better than 1.0e-05: 5789 Number of HSP's gapped: 272921 Number of HSP's successfully gapped: 5789 Length of query: 296 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 161 Effective length of database: 1,788,859,178 Effective search space: 288006327658 Effective search space used: 288006327658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)