BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0010.p (529 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K496.1 B3K496_9BACI Response regulator receiver 501 e-140 B1D500.1 B1D500_9BACL Two component transcriptional regulator, A... 307 2e-81 A4XMI8.1 A4XMI8_CALS8 Two component transcriptional regulator, A... 211 2e-52 A9U860.1 A9U860_PHYPA Predicted protein (Fragment) 129 8e-28 C0FZA2.1 C0FZA2_9FIRM Putative uncharacterized protein 122 8e-26 >B3K496.1 B3K496_9BACI Response regulator receiver Length = 527 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 260/526 (49%), Positives = 346/526 (65%), Gaps = 7/526 (1%) Query: 1 MKKLLIIDDEKMIRQGLQAMIEREYPSRYSIXXXXXXXXXXXXYQQERRDIIITDIRMPV 60 M+ L+I+DDEK IR GL+ MIERE+P +Y I Y ++ DI+ITDIRMPV Sbjct: 1 MRSLMIVDDEKNIRYGLKTMIEREFPDQYEIRLAAQGQEALEAYNEQPADIVITDIRMPV 60 Query: 61 MDGITLLERLSAEAEPGSEGPAVVILSGYDDFEYAKSAIRYRVKDYLLKPIRREELFGVL 120 MDGI L+E L+ P P +ILSGYDDFEYAK+AIRY+VK+YLLKPIRR+ELF L Sbjct: 61 MDGIRLIEALAEREGPLGVKPVFLILSGYDDFEYAKAAIRYQVKEYLLKPIRRDELFAAL 120 Query: 121 EQISREWKEQESSSRRLAQEAEGYRRELRTARLRGLLMXXXXXXXXXXXXXXXXXXXXFT 180 + Q R+A ++ Y ++L+T RL+ LL F Sbjct: 121 RKTEEVLIRQADLHDRMAA-SDAYLQQLQTHRLKELLERPQGVNGEPEAAAAEIGFDSFV 179 Query: 181 ----VGVLNFYYNDGTRMKPEEVQGLIERMSGPLSGRFTEILTDWEGKLVLVGSGKEAFR 236 V V+ + Y DG M +E++ LI+ M+ + GR D +G++VL+GS F Sbjct: 180 KPFRVAVMKYKYEDGNSMNKDELKQLIDNMTASVEGRINACFLDGKGRVVLIGSPDGQFE 239 Query: 237 ELARQAAAKXXXXXXXXXXXXXXNPDGFRTGYKEACRALQYTFLPPQASFIDYADLREGR 296 +LARQ + + R+ Y +A AL YTF+ P + + D++ Sbjct: 240 KLARQFTEREMDGLFVGISRKGFRFEDIRSCYNQALTALSYTFIHPNVKLMSHDDIQGEL 299 Query: 297 LQFPAPEEELRKLLNMLGTEREKEIKSLLGAIFQLEHLQHLDLAYLEHVGRSINERVLDE 356 +P PEE +RKL NMLGTERE+EIK+LL IF ++ + H+ + YLE V + INERVLDE Sbjct: 300 NTYPVPEENIRKLGNMLGTEREREIKALLLDIFHIDDMPHVAIDYLEFVSKRINERVLDE 359 Query: 357 VFRLHGEASVEVLKLYRTVGNLYNFRHFHDYYRTLEHLLITVNEYIIGIRSAHTEHTDME 416 VFR++G++ VEVLKLYR VG + N+RHFH Y+R LEHLL+ VNEY+ GIRSAH+EH++++ Sbjct: 360 VFRVYGDSMVEVLKLYRKVGTMDNYRHFHTYFRNLEHLLLHVNEYVKGIRSAHSEHSEIK 419 Query: 417 EALAYIEANYARPLNMAMVSNYVSLNYSYFSEAFKAYTGESFVLYLKRVRIRHAKALLSE 476 A++Y+E NY RPLNMAMVSNYVSLNYSYFSEAFKA+TGE+FV+YLK++RI AK LL + Sbjct: 420 AAVSYMEENYHRPLNMAMVSNYVSLNYSYFSEAFKAHTGENFVVYLKKLRITKAKDLLQD 479 Query: 477 NRIKLAGVSEAVGFENSKQFARVFKELEGISPGEYRAKLLLERDAG 522 +KLA + +AVGFEN+KQF+RVFKELEGISP EYR K ++ DAG Sbjct: 480 GDMKLADIGKAVGFENTKQFSRVFKELEGISPHEYRIK--VQTDAG 523 >B1D500.1 B1D500_9BACL Two component transcriptional regulator, AraC family Length = 520 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 182/517 (35%), Positives = 287/517 (55%), Gaps = 8/517 (1%) Query: 1 MKKLLIIDDEKMIRQGLQAMIEREYPSRYSIXXXXXXXXXXXXYQQERRDIIITDIRMPV 60 M +LLI+DDEK+IR+GLQ++IER++P R++ QE DI+ITDIRMP+ Sbjct: 1 MIRLLIVDDEKIIRRGLQSVIERQFPDRFNYRFAENGQEALELLGQEPADILITDIRMPI 60 Query: 61 MDGITLLERLSAEAEPGSEGPAVVILSGYDDFEYAKSAIRYRVKDYLLKPIRREELFGVL 120 MDGI LLE+L + P VV+LSGY+DF YA+ IRY VKDYL+KP+ REELF V+ Sbjct: 61 MDGIELLEQL----QDHQVKPEVVLLSGYNDFAYAQKGIRYAVKDYLVKPVVREELFAVM 116 Query: 121 EQISREWKEQESSSRRLAQEAEGYRRELRTARLRGLLMXXXXXXXXXXXXXXXXXXXXFT 180 E++ + + +E + + + + EL T L + + Sbjct: 117 ERLILDIRVREEQADKAGENVSLFAAELVTLHLTQMDAGDALTPNKLKQAGLKWLDAGYA 176 Query: 181 VGVLNFYYNDGTRMKPEEVQGLIERMSGPLSGRFTEILT-DWEGKLVLVGSGKEAFRELA 239 +G++ + G++ +V +++ L G+ +LT D +G +++ F LA Sbjct: 177 LGLI-MRRDGGSQAGSTDVATFRNQIAELLQGQTEWLLTRDGKGGTIMLARDSVLFCRLA 235 Query: 240 RQAAAKXX-XXXXXXXXXXXXNPDGFRTGYKEACRALQYTFLPPQASFIDYADLREGRLQ 298 Q + R Y +A + L+Y L + +D L E + Sbjct: 236 EQWRLHVYGSQLRIATSDSVQGIEQIRWAYSQAKQTLKYGILLSERDVLDNTILSERNEK 295 Query: 299 FPAPEEELRKLLNMLGTEREKEIKSLLGAIFQLEHLQHLDLAYLEHVGRSINERVLDEVF 358 P E ++++LN+LG R EIK LL I + + ++ YLE + + NE + D++F Sbjct: 296 HAVPVELIQRILNLLGMGRGDEIKQLLNQILDVRIISSCEIGYLERISQLFNEELFDKLF 355 Query: 359 RLHGEASVEVLKLYRTVGNLYNFRHFHDYYRTLEHLLITVNEYIIGIR-SAHTEHTDMEE 417 ++G ++ L+ Y VG++ NF HF DYY +E L+ +++ +I R A TE M++ Sbjct: 356 SIYGYKVLDQLRTYAQVGHIGNFDHFGDYYTAVEQLIDSLDRFIQNRRVQAPTEQNTMQK 415 Query: 418 ALAYIEANYARPLNMAMVSNYVSLNYSYFSEAFKAYTGESFVLYLKRVRIRHAKALLSEN 477 L Y++ +YA LNMA+VSN+ SLNYSYFS AF+ Y+GESF Y++R+R+ AK LL + Sbjct: 416 VLNYLQTHYADDLNMAVVSNHFSLNYSYFSYAFQEYSGESFSNYVRRLRLDKAKELLVHS 475 Query: 478 RIKLAGVSEAVGFENSKQFARVFKELEGISPGEYRAK 514 +K+ +S+ VGFEN K F R+FK+ EGI+ E+R++ Sbjct: 476 DLKVYEISDQVGFENVKHFTRIFKDTEGITALEFRSQ 512 >A4XMI8.1 A4XMI8_CALS8 Two component transcriptional regulator, AraC family Length = 516 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 144/522 (27%), Positives = 260/522 (49%), Gaps = 25/522 (4%) Query: 1 MKKLLIIDDEKMIRQGLQAMIEREYPSRYSIXXXXXXXXXXXXYQQERRDIIITDIRMPV 60 M+K+LI+DDEK+IR+G++ ++E+ I E+ D++I DIR+P+ Sbjct: 1 MRKVLIVDDEKLIRKGIKTILEKSNLEFKDIKEASNGKEALDLLFSEQFDLLIIDIRLPL 60 Query: 61 MDGITLLERLSAEAEPGSEGPAVVILSGYDDFEYAKSAIRYRVKDYLLKPIRREELFGVL 120 +DGI++++++ + + P +V++SGYD+F YAK + Y + Y+LKPI + EL +L Sbjct: 61 LDGISVIKKI----QNMPQKPKIVVISGYDEFSYAKECLEYGARGYILKPIDKSELLDLL 116 Query: 121 EQISREWKEQESSSRRLAQEAEGYRRELRTARLRGLLMXXXXXXXXXXXXXXXXXXXXFT 180 +I +E E+E + +L + + + L +L+ Sbjct: 117 AKIQQEL-EREEDTYKLFKMQNILKSRMVEVELNNILLSNLTQTEIKKKLETLGIDSEIQ 175 Query: 181 VGVLNFYYNDGTRMKPEEVQGLIERMSGPL-----SGRFTEILTDWEGK-LVLVGSGKEA 234 V +Y T+ + E+ + E + L G F L D+E LV+ + E Sbjct: 176 VYT---FYIFITKDREEDYSIVSEDLKNNLIKLFPDGAFNIALIDYEKNILVISDTLIEP 232 Query: 235 FR--ELARQAAAKXXXXXXXXXXXXXXNPDGFRTGYKEACRALQYTFLPPQASFIDYADL 292 R +L + K N + + + + Y F+ + S Y+++ Sbjct: 233 LRIYDLCKGVFQKDVYIGIYNEKQPLEN---LKLLHGRSKKTALYAFVASK-SIEYYSNV 288 Query: 293 REGRLQFPAPEEELRKLLNMLGTEREKEIKSLLGAIFQLEHLQHLDLAYLEHVGRSINER 352 ++ + +E + KL ++ ++KE S + IF E L++ + ++ + + Sbjct: 289 KDRENIACSKDESIHKLKELILAGKQKEALSCVENIFNHEFLKNCSIESIQDIATKLYRE 348 Query: 353 VLDEVFRLHGEASVEVLKL--YRTVGNLYNFRHFHDYYRTLEHLLITVNEYIIGIRSAHT 410 +++ R + ++L + Y + N+ NF + +Y L++ + I ++ T Sbjct: 349 IIE---RFESQVPRKILDMSSYLLLKNILNFSNMKEYIEMLKNFVYEATSMIAALKGILT 405 Query: 411 EHTDMEEALAYIEANYARPLNMAMVSNYVSLNYSYFSEAFKAYTGESFVLYLKRVRIRHA 470 ++EEA+ +I NY + +NMAMV+N+VSLNY YFS FK TG SF+ YL +VRI A Sbjct: 406 VKDEIEEAIKFINENYYKDINMAMVANHVSLNYYYFSTIFKERTGMSFLDYLNKVRIDKA 465 Query: 471 KALLSENRIKLAGVSEAVGFENSKQFARVFKELEGISPGEYR 512 K LL+ +K+ +SE VG++N K FAR+FKE+ G++P EYR Sbjct: 466 KELLANTNLKIWEISEKVGYKNPKHFARIFKEITGLTPNEYR 507 >A9U860.1 A9U860_PHYPA Predicted protein (Fragment) Length = 214 Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 60/110 (54%), Positives = 85/110 (77%) Query: 405 IRSAHTEHTDMEEALAYIEANYARPLNMAMVSNYVSLNYSYFSEAFKAYTGESFVLYLKR 464 +RS H + ++++ A+ YIE ++ LNMA+VSN+VSLNYSYFS+AFK YTGE+FV YL++ Sbjct: 1 MRSMHFDQSEIQRAIVYIEEHFHENLNMAVVSNHVSLNYSYFSQAFKEYTGETFVSYLRK 60 Query: 465 VRIRHAKALLSENRIKLAGVSEAVGFENSKQFARVFKELEGISPGEYRAK 514 +RIR AK LL +K+ +SE GFEN K F +VFKE+EG++P EYR++ Sbjct: 61 LRIRKAKELLGSTDLKVYEISERAGFENVKHFTKVFKEMEGVAPLEYRSQ 110 >C0FZA2.1 C0FZA2_9FIRM Putative uncharacterized protein Length = 491 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 57/118 (48%), Positives = 85/118 (72%), Gaps = 3/118 (2%) Query: 405 IRSAHTEHTDMEE---ALAYIEANYARPLNMAMVSNYVSLNYSYFSEAFKAYTGESFVLY 461 I S++ ++ ++++ A+ YIE NYA+ LNMA+VSNY+S+NYS FS +FK YTG +FV Y Sbjct: 373 INSSYDQNKNVQKIKMAVDYIEENYAKDLNMAVVSNYISMNYSLFSYSFKQYTGSNFVNY 432 Query: 462 LKRVRIRHAKALLSENRIKLAGVSEAVGFENSKQFARVFKELEGISPGEYRAKLLLER 519 LK +R+R AK LL+E +K+ +S+AVG++N K F ++FK G+SP EYR L + Sbjct: 433 LKEIRMREAKKLLTETDMKIIEISQAVGYDNEKHFMKIFKATCGVSPTEYRHNAYLSK 490 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 86/141 (60%), Gaps = 7/141 (4%) Query: 1 MKKLLIIDDEKMIRQGLQAMIEREYPSRYSIXXXXXXXXXXXXYQQERRDIIITDIRMPV 60 MK +LI++DEKMIRQG++ MI R +I +++ D++ TDIRMP Sbjct: 1 MKTVLIVEDEKMIRQGIKTMIMRSGVPIETIMECNNGETALEILKEQEIDVMFTDIRMPK 60 Query: 61 MDGITLLERLSAEAEPGSEGPAVVILSGYDDFEYAKSAIRYRVKDYLLKPIRREELFGVL 120 MDGI L++++ + P V +SGYDDF YA +R V++Y+LKPI RE++ +L Sbjct: 61 MDGIELVQKMQSLEHI----PLTVAISGYDDFAYAVEMLRNGVREYILKPIEREKITEIL 116 Query: 121 EQISREW---KEQESSSRRLA 138 ++++ E KE+E +++++ Sbjct: 117 KKLNAEIESRKEKEENNQKIG 137 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,760,919,642 Number of extensions: 105472508 Number of successful extensions: 396173 Number of sequences better than 1.0e-05: 3694 Number of HSP's gapped: 405721 Number of HSP's successfully gapped: 4170 Length of query: 529 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 388 Effective length of database: 1,732,333,088 Effective search space: 672145238144 Effective search space used: 672145238144 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)