BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0007.p (213 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGY9.1 B3KGY9_9BACI Phosphoglycerate mutase 259 8e-68 C5CF58.1 C5CF58_9THEM Phosphoglycerate mutase 196 2e-48 B2A0N3.1 B2A0N3_NATTJ Phosphoglycerate mutase 192 2e-47 Q890L1.1 Q890L1_CLOTE Phosphoglycerate mutase EC=5.4.2.1 183 8e-45 Q5KZY5.1 Q5KZY5_GEOKA Phosphoglycerate mutase EC=5.4.2.1 179 2e-43 >B3KGY9.1 B3KGY9_9BACI Phosphoglycerate mutase Length = 210 Score = 259 bits (663), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 118/200 (59%), Positives = 156/200 (78%) Query: 4 TTIFITRHGQTEWNVQNRMQGHLDSPLTPLGEQQAQWLNAGLQKEPLDLVYSSSSPRAYR 63 TTI++ RHGQTEWNVQ+R QGH DSPLT LG +QA+WL LQ +P D ++SS+S RAY Sbjct: 5 TTIYLVRHGQTEWNVQHRFQGHKDSPLTKLGIRQAEWLGEALQHDPFDFIFSSTSSRAYH 64 Query: 64 TAEIIRGERDIPLTACDEFKEIGMGVWEGCDSGEIEARDPVQHFNFWKNPEEFRVEGSES 123 TAE+I+G R++ +TACD+F+EI +GVWEG I P Q +FW +PE F VEGSE+ Sbjct: 65 TAELIKGNRNVQITACDKFREINLGVWEGEIQERISDMYPQQLDHFWNHPELFGVEGSET 124 Query: 124 FAGVQKRALDKLQEIVAAHEGQRILIVTHTVVIKVLMAYFEERAMEKLWDLPYIYPTCLC 183 F V++RA++KL EI+A++ G RIL+VTHTVV+K+L+AYFE R++++LWDLPYI+PTCL Sbjct: 125 FHEVRERAVNKLNEIIASNPGSRILLVTHTVVVKLLVAYFEGRSLDRLWDLPYIHPTCLS 184 Query: 184 RIDFTDGTAEILLHGDKSHY 203 +I+ TD ILLHGD SHY Sbjct: 185 KIELTDDVPSILLHGDVSHY 204 >C5CF58.1 C5CF58_9THEM Phosphoglycerate mutase Length = 210 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 135/201 (67%) Query: 3 VTTIFITRHGQTEWNVQNRMQGHLDSPLTPLGEQQAQWLNAGLQKEPLDLVYSSSSPRAY 62 +T ++ITRHGQTEWN++ R+QG DS LT LGE+QA+WL L+ +D++ SSSS RA Sbjct: 1 MTKLYITRHGQTEWNLEGRIQGQKDSKLTTLGEKQAEWLGERLKNVEIDVIISSSSGRAI 60 Query: 63 RTAEIIRGERDIPLTACDEFKEIGMGVWEGCDSGEIEARDPVQHFNFWKNPEEFRVEGSE 122 RTAEIIRG+R+I + D +EI G WEG EI+ P ++ NFW P ++ G E Sbjct: 61 RTAEIIRGKRNIEIVPNDNLREIHFGQWEGQLHAEIKKYWPDEYRNFWNFPHLYKPVGGE 120 Query: 123 SFAGVQKRALDKLQEIVAAHEGQRILIVTHTVVIKVLMAYFEERAMEKLWDLPYIYPTCL 182 +F V R +++++I++ +EG+ ILIVTH VV+K L+AYFE + + W ++YPTCL Sbjct: 121 TFLQVLDRVSNEVEKIISKYEGKNILIVTHAVVLKALIAYFENKDLMDFWSGAFMYPTCL 180 Query: 183 CRIDFTDGTAEILLHGDKSHY 203 ++ + + +I+L GD SHY Sbjct: 181 NIVEIKEDSRKIVLQGDISHY 201 >B2A0N3.1 B2A0N3_NATTJ Phosphoglycerate mutase Length = 204 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 90/202 (44%), Positives = 134/202 (66%), Gaps = 1/202 (0%) Query: 3 VTTIFITRHGQTEWNVQNRMQGHLDSPLTPLGEQQAQWLNAGLQKEPLDLVYSSSSPRAY 62 +T +++TRHG+TEWN+Q +MQG +SPLT LGE+QA+WL L + L+ +Y+S+S R Sbjct: 1 MTKLYLTRHGETEWNLQKKMQGWHNSPLTQLGEKQAKWLGDRLAEVELETIYTSTSGRTQ 60 Query: 63 RTAEIIRGERDIPLTACDEFKEIGMGVWEGCDSGEIEARDPVQHFNFWKNPEEFRVEGSE 122 RTAE+IRG R+I L D +EI +G WEG I+ ++ FW+ P +R E E Sbjct: 61 RTAELIRGNRNIDLIPKDNLREINLGDWEGEFVENIKKQENEAFRKFWEEPHNYRKETGE 120 Query: 123 SFAGVQKRALDKLQEIVAAHE-GQRILIVTHTVVIKVLMAYFEERAMEKLWDLPYIYPTC 181 +F ++ R + +++I++ H IL+VTH V+KVLMA+FE R +EKLWD P++Y TC Sbjct: 121 TFYQLKDRVVPLIKQIISDHNPNSNILVVTHAAVLKVLMAHFENRPIEKLWDPPFMYQTC 180 Query: 182 LCRIDFTDGTAEILLHGDKSHY 203 L ++ + ++LLHGD SHY Sbjct: 181 LNLVEINENGYKVLLHGDTSHY 202 >Q890L1.1 Q890L1_CLOTE Phosphoglycerate mutase EC=5.4.2.1 Length = 213 Score = 183 bits (465), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 87/198 (43%), Positives = 125/198 (63%) Query: 5 TIFITRHGQTEWNVQNRMQGHLDSPLTPLGEQQAQWLNAGLQKEPLDLVYSSSSPRAYRT 64 T++ITRHGQTEWN + RMQG DSPLT LG +QA+ L L +D++YSS RA +T Sbjct: 6 TLYITRHGQTEWNTERRMQGWNDSPLTKLGMEQAKRLGKRLDNNNIDIIYSSPLGRAIKT 65 Query: 65 AEIIRGERDIPLTACDEFKEIGMGVWEGCDSGEIEARDPVQHFNFWKNPEEFRVEGSESF 124 A+I+RGERDIP+ + KEI +G WEG + I+ + NFW NP+ ++ G E+F Sbjct: 66 AKIVRGERDIPIVCDNRLKEIKLGKWEGMNHDLIDNYYKEEIDNFWNNPKLYKSIGGETF 125 Query: 125 AGVQKRALDKLQEIVAAHEGQRILIVTHTVVIKVLMAYFEERAMEKLWDLPYIYPTCLCR 184 ++ R D L+EI+ H+ + ILIVTH + +K +M Y E+ ++ W P+I PT L + Sbjct: 126 LQLRNRVKDFLEEILKKHKDETILIVTHAITLKGIMNYIEDLTIDNFWGEPHINPTSLTK 185 Query: 185 IDFTDGTAEILLHGDKSH 202 ++ D ILL+ D SH Sbjct: 186 VEIEDSNRRILLNADISH 203 >Q5KZY5.1 Q5KZY5_GEOKA Phosphoglycerate mutase EC=5.4.2.1 Length = 212 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 90/199 (45%), Positives = 124/199 (62%) Query: 4 TTIFITRHGQTEWNVQNRMQGHLDSPLTPLGEQQAQWLNAGLQKEPLDLVYSSSSPRAYR 63 TT+++TRHG+T+WNV+ RMQG DSPLT G Q A L L+ L +Y+S+S RA Sbjct: 7 TTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALE 66 Query: 64 TAEIIRGERDIPLTACDEFKEIGMGVWEGCDSGEIEARDPVQHFNFWKNPEEFRVEGSES 123 TAEI+RG R IP+ + +EI +G WEG EI DP+ +FW P + + E Sbjct: 67 TAEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWNAPHLYAPQRGER 126 Query: 124 FAGVQKRALDKLQEIVAAHEGQRILIVTHTVVIKVLMAYFEERAMEKLWDLPYIYPTCLC 183 F VQ+RAL+ +Q IV HEG+ +LIVTH VV+K LMA F++ ++ LW PY+Y T + Sbjct: 127 FCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHLWSPPYMYGTSVT 186 Query: 184 RIDFTDGTAEILLHGDKSH 202 I+ GT + + GD SH Sbjct: 187 IIEVDGGTFHVAVEGDVSH 205 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,343,244,967 Number of extensions: 55075335 Number of successful extensions: 135537 Number of sequences better than 1.0e-05: 2565 Number of HSP's gapped: 134494 Number of HSP's successfully gapped: 2611 Length of query: 213 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 83 Effective length of database: 1,835,964,253 Effective search space: 152385032999 Effective search space used: 152385032999 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)