BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0006.p
         (271 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A9U7P3.1 A9U7P3_PHYPA Predicted protein (Fragment)                    144   7e-33

>A9U7P3.1 A9U7P3_PHYPA Predicted protein (Fragment)
          Length = 376

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 87/127 (68%), Gaps = 1/127 (0%)

Query: 2   IIAASGALPALGINMLCYTAAIATLLCLPKLPKPDAAPGSFSLAAYMREIAEGFTFYKQF 61
           + AASGALP LGIN +CY AAI  LL LP + KP  A  SFSL AY+R+I EGF+FY++F
Sbjct: 250 LTAASGALPTLGINAICYIAAITALLYLPTMQKP-VAQTSFSLKAYIRDIGEGFSFYRRF 308

Query: 62  PAMFTIMLMASVSNLSSIAVWTMMVPYVREVLHRDXXXXXXXXXXXXXXXXXXXXVISLL 121
           PAM +IM+M S+SN+SS+A+WTMM+P+VREVLHRD                    +IS +
Sbjct: 309 PAMLSIMIMVSISNMSSVAIWTMMIPFVREVLHRDAAAMGTLTTASAFGTLAGLAIISWM 368

Query: 122 GEITHRR 128
           GEI  RR
Sbjct: 369 GEIKRRR 375


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.140    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,215,941,412
Number of extensions: 39940037
Number of successful extensions: 160255
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 160315
Number of HSP's successfully gapped: 3
Length of query: 271
Length of database: 3,060,696,203
Length adjustment: 133
Effective length of query: 138
Effective length of database: 1,807,701,208
Effective search space: 249462766704
Effective search space used: 249462766704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)