BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0005.p
         (155 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A9U7P3.1 A9U7P3_PHYPA Predicted protein (Fragment)                    152   1e-35
C3J072.1 C3J072_9BACI Major facilitator superfamily MFS_1              96   1e-18
B7Y8T6.1 B7Y8T6_9BACI Major facilitator superfamily MFS_1              96   1e-18
B5UU89.1 B5UU89_BACCE Putative permease                                75   2e-12
C3FLQ5.1 C3FLQ5_BACTB Multidrug-efflux transporter                     74   5e-12

>A9U7P3.1 A9U7P3_PHYPA Predicted protein (Fragment)
          Length = 376

 Score =  152 bits (383), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/133 (68%), Positives = 102/133 (76%)

Query: 1   MLKRSYYGLLSTISLSAFGDAFGLLAMEWLVYELTGSKLAMGALALSSGIPELVLRLIGS 60
           MLKRSYYGLL+T++LS+ GD FGLLAMEWLVYELT SKLAMGA+ALS  IPE+  RL+GS
Sbjct: 95  MLKRSYYGLLATVTLSSLGDVFGLLAMEWLVYELTASKLAMGAMALSFSIPEVAFRLLGS 154

Query: 61  PLSDRLPRVRFMACLAAVRLLAIALPLGMGLAGQLQLWHXXXXXXXXXXXXXXXMPTAMA 120
           PLSDRL R RFMA LAAVRLLA+ LPL MG+A QLQLWH               MPTAMA
Sbjct: 155 PLSDRLHRGRFMAGLAAVRLLALLLPLSMGIADQLQLWHLFLAAALSGACSALFMPTAMA 214

Query: 121 VIPGVADSRKLVR 133
           V+PGVA   KL+R
Sbjct: 215 VVPGVAGKHKLLR 227


>C3J072.1 C3J072_9BACI Major facilitator superfamily MFS_1
          Length = 406

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 76/132 (57%)

Query: 2   LKRSYYGLLSTISLSAFGDAFGLLAMEWLVYELTGSKLAMGALALSSGIPELVLRLIGSP 61
           L R Y+ L    ++S+ GD+   L M W VY +TGS++AMG L ++  IPE+V+R++GSP
Sbjct: 4   LNRYYWFLWVAQAVSSVGDSIASLFMGWTVYNITGSQVAMGNLYIAFVIPEIVVRILGSP 63

Query: 62  LSDRLPRVRFMACLAAVRLLAIALPLGMGLAGQLQLWHXXXXXXXXXXXXXXXMPTAMAV 121
           L DR+ R   M C+  VR +A A    + L G+LQLWH                P+ +AV
Sbjct: 64  LVDRVDRRYLMFCMDFVRFVAFATLTSIVLLGKLQLWHLYAIAIIGGASAALFYPSGIAV 123

Query: 122 IPGVADSRKLVR 133
           +  +  S+++VR
Sbjct: 124 LSSIVHSKEMVR 135


>B7Y8T6.1 B7Y8T6_9BACI Major facilitator superfamily MFS_1
          Length = 406

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 76/132 (57%)

Query: 2   LKRSYYGLLSTISLSAFGDAFGLLAMEWLVYELTGSKLAMGALALSSGIPELVLRLIGSP 61
           L R Y+ L    ++S+ GD+   L M W VY +TGS++AMG L ++  IPE+V+R++GSP
Sbjct: 4   LNRYYWFLWVAQAVSSVGDSIASLFMGWTVYNITGSQVAMGNLYIAFVIPEIVVRILGSP 63

Query: 62  LSDRLPRVRFMACLAAVRLLAIALPLGMGLAGQLQLWHXXXXXXXXXXXXXXXMPTAMAV 121
           L DR+ R   M C+  VR +A A    + L G+LQLWH                P+ +AV
Sbjct: 64  LVDRVDRRYLMFCMDFVRFVAFATLTSIVLLGKLQLWHLYAIAIIGGASAALFYPSGIAV 123

Query: 122 IPGVADSRKLVR 133
           +  +  S+++VR
Sbjct: 124 LSSIVHSKEMVR 135


>B5UU89.1 B5UU89_BACCE Putative permease
          Length = 404

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 64/129 (49%)

Query: 3   KRSYYGLLSTISLSAFGDAFGLLAMEWLVYELTGSKLAMGALALSSGIPELVLRLIGSPL 62
            RS++ +    ++S  G AFG L    LVYELTGS++A+ ++ L   IP L+L+LI  P 
Sbjct: 7   NRSFFFMWIGSAISELGGAFGTLCNSILVYELTGSEMALSSMWLLYFIPSLILQLISGPF 66

Query: 63  SDRLPRVRFMACLAAVRLLAIALPLGMGLAGQLQLWHXXXXXXXXXXXXXXXMPTAMAVI 122
            D+  R   M C   +R     LPL M + G +++WH               +P + A+ 
Sbjct: 67  IDKWSRKWIMICSQWIRASVFLLPLVMLVTGSIEVWHIYVVQIVVGFITPLYIPASQAIT 126

Query: 123 PGVADSRKL 131
           P +    +L
Sbjct: 127 PSIVSKEQL 135


>C3FLQ5.1 C3FLQ5_BACTB Multidrug-efflux transporter
          Length = 404

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%)

Query: 3   KRSYYGLLSTISLSAFGDAFGLLAMEWLVYELTGSKLAMGALALSSGIPELVLRLIGSPL 62
            RS++ +    ++S  G AFG L    LVYELTGS++A+ ++ L   IP L+L+LI  P 
Sbjct: 7   NRSFFFMWIGSAISELGGAFGTLCNSILVYELTGSEMALSSMWLLYFIPSLILQLISGPF 66

Query: 63  SDRLPRVRFMACLAAVRLLAIALPLGMGLAGQLQLWHXXXXXXXXXXXXXXXMPTAMAVI 122
            D+  R   M C   +R     LPL M + G +++WH                P + A+ 
Sbjct: 67  IDKWSRKWIMICSQWIRASVFLLPLVMLVTGSIEVWHIYVVQIVVGLITPLYTPASQAIT 126

Query: 123 PGVADSRKL 131
           P +    +L
Sbjct: 127 PSIVGKEQL 135


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 700,954,805
Number of extensions: 25929345
Number of successful extensions: 74161
Number of sequences better than 1.0e-05: 93
Number of HSP's gapped: 74278
Number of HSP's successfully gapped: 93
Length of query: 155
Length of database: 3,060,696,203
Length adjustment: 116
Effective length of query: 39
Effective length of database: 1,967,858,463
Effective search space: 76746480057
Effective search space used: 76746480057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)