BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0003.p (1848 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3N4.1 B3K3N4_9BACI 5'-Nucleotidase domain protein 954 0.0 Q2BFS8.1 Q2BFS8_9BACI Endonuclease/Exonuclease/phosphatase famil... 555 e-155 C0Z7Q5.1 C0Z7Q5_BREBN Putative uncharacterized protein 515 e-143 C4L094.1 C4L094_EXISA Endonuclease/exonuclease/phosphatase 487 e-135 A7GM07.1 A7GM07_BACCN Endonuclease/exonuclease/phosphatase 479 e-132 >B3K3N4.1 B3K3N4_9BACI 5'-Nucleotidase domain protein Length = 2084 Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust. Identities = 556/1193 (46%), Positives = 741/1193 (62%), Gaps = 110/1193 (9%) Query: 257 LYKTPILLQDDTVLIKAYSAEEGKTDSGISQFSYTTKEAISGLTIPKIQGTVQSSTYAGQ 316 LY PI + DT IKA G S + +F+Y +A I IQG +S+Y GQ Sbjct: 522 LYSAPIQIDRDTT-IKAIVVS-GADVSKVYEFAY---KATQQPRIADIQGEDHASSYNGQ 576 Query: 317 LVKDVAGIVT-----YTSGST--FYIQTATPDSDPRTSEAIMVY-LPGNKVKAADSVLVD 368 V D+ G+VT +++GS FYIQ PDS+P TS+AI VY N+ + D V V Sbjct: 577 TVTDIEGVVTQYGYTFSNGSIKGFYIQDPKPDSNPNTSDAIFVYSTDPNRPQIGDLVSVT 636 Query: 369 GWVKEYKESGYADATDLLTTEIAATQATVLSSNNPLPAPTVIGTGGRTIPATTISVGLDK 428 G V EY E +++L +T+I L LP P +G GGR IP I Sbjct: 637 GKVAEYNE---GSSSNLTSTQIELQSFKNLGQGQQLPDPVTLGKGGRPIPDAIIDNDGMT 693 Query: 429 ELDPAKYALDFYESLEGMRVQLITPKIIGPF-----DYEIPVTVNNGASTTEVSSPAGGL 483 DP + A+DFYESLEGM V+L P II P+ Y I V+N + +V +PAGGL Sbjct: 694 TFDPDEDAIDFYESLEGMLVRLPQPTIISPYWTSGGTYNIATRVDNDVA--DVITPAGGL 751 Query: 484 VLT-GADFNPQRILIA-AQPGTPVRTGQVFKGNITGVLGYDYGNFKVHP-EGALPEVDKG 540 VL +FNPQR+LIA PG V TG F ++ GV+GY+ GNFKV P + +LP +D Sbjct: 752 VLKENGNFNPQRLLIAYGNPGQEVSTGDTFADDVIGVIGYNGGNFKVIPAKNSLPPIDS- 810 Query: 541 TSIERETTPLKAGADKLTVASFNVENFSLKSGSTKIENIAKAIVTNLNTPDILGLLEVQD 600 +S ++E + + A++L VA++N+ENF S KI +A++IV N+ +PDI+GL+EVQD Sbjct: 811 SSFKQEVSTIDVNAEQLRVATYNIENFYPGVSSAKINKLAESIVNNIKSPDIIGLVEVQD 870 Query: 601 NDGDTNSGTVDATDSYKALIDAIKKQGGPTYAFTDIAPVNNMDGGAPGGNIRAGFIYNTE 660 N+G+ N+GT A SY+ LI+AIK GGPTY+FTDI P NN DGGAPG NIR GF+YN + Sbjct: 871 NNGEQNNGTTAADQSYQTLINAIKAAGGPTYSFTDIEPENNNDGGAPGANIRVGFLYNAD 930 Query: 661 RVQLA---EGTKGDATTAVAY--TKDGGLSLNPGRIDPTNPAFANSRKPLAAEFIFNNKK 715 R+QL+ +G KG T +VAY KD L+LNPGRIDP N AF SRKPLAA+F F +K Sbjct: 931 RIQLSDSVQGKKGSPTESVAYDAAKDQ-LTLNPGRIDPQNAAFNASRKPLAAQFEFQGEK 989 Query: 716 VMVIANHFNSKTGDSALYGGIQPPVLPSEAQRAEIATVVNGFVSDVLAKSPDANLVVLGD 775 V+VIANHFNSK+GD +G QPPVL SE QR +IA VVN FV DV++ +PDAN+VVLGD Sbjct: 990 VIVIANHFNSKSGDQGPFGNTQPPVLSSETQRHQIAAVVNSFVKDVVSANPDANIVVLGD 1049 Query: 776 LNDFQFSNTLKILKGSALTNLVDTLPLGERYSYVYQGNSQTLDHMLVNNKLATRSALDIV 835 LNDFQF+ T ILKG+ L NL++TLPL E+Y+Y Y GNSQ LDH+LV+ L + +DIV Sbjct: 1050 LNDFQFTETANILKGNELDNLIETLPLKEQYTYTYDGNSQVLDHILVSKNLTRSTQVDIV 1109 Query: 836 HINADFDEKEGRVSDHDPLLTQIDFGTE---NFNLRVLHTNDTHGHL------ENITKRT 886 H+NADF +GRVSDHDP++ QID E F L +LHTNDTH +L +NI +R Sbjct: 1110 HLNADFPASKGRVSDHDPVVAQIDLKEEAVDGFPLTILHTNDTHANLDTVSSPDNIARRV 1169 Query: 887 SAISSERTG--NAVLLDAGDVFSGTLYFTQFKGQADIEFMNNIGYDAMTFGNHEFDLNAK 944 +AI + N +L+DAGDVFSGTLYF Q+ G AD+EFMN + YDAMTFGNHEFD K Sbjct: 1170 TAIKEAKANAVNPLLVDAGDVFSGTLYFNQYLGLADLEFMNLVQYDAMTFGNHEFD---K 1226 Query: 945 EPEVLKNFVTAAKFPFTSANIDFTTKGSELAELYHDAIGMLETDETKSTAKDGHIYPSVI 1004 EVL +F+ A+FPF S+N++F+ + L + + +E AKD IYP++I Sbjct: 1227 GSEVLNDFIEHAEFPFVSSNVNFSAD-ALLTQKFK--------NEVTRDAKDATIYPAII 1277 Query: 1005 KDVYGEKVGIFGLTTEDTVGLSSPGEQISFKDHVESAKKTVAMLEAQGINKIIAVTHLGY 1064 +V GE+VG+ GLTTEDT ++SPG+ ++F++ V+ AK TVAML+ +GINKI+ ++HLGY Sbjct: 1278 MEVDGEQVGLIGLTTEDTANIASPGD-VTFENAVQKAKDTVAMLKNEGINKIVVLSHLGY 1336 Query: 1065 TVDQELAKAVPGIDIIVGGHSHTKIDNPPAPIVNAGTGKNVLIVQTGEYSQFLGELNVTF 1124 VD LAK V GIDIIVGGHSHTK+D +V+ + LIVQTGE QFLG+L V F Sbjct: 1337 DVDVNLAKEVEGIDIIVGGHSHTKLD---LAVVDRSDSEPKLIVQTGEKGQFLGQLEVVF 1393 Query: 1125 DKDGEILAYNGKLLDVNLFGEDSTAKKLLAPYDAKLAI-----------VRNTVVGYSDV 1173 D +G + +N L+ V+ +DS + ++ P L I ++ T VG ++V Sbjct: 1394 DDEGVLQEWNSSLISVD--EKDSNEQYVIQPDPEALQILNTKYKPGVEELKQTEVGTTEV 1451 Query: 1174 DLYTNRMIDGKSVRV-VRQEETPIGNMIADSIAEKVRELMPNFVSASDLASIKGVVAIQN 1232 L VR VR +ET +GN+IAD + + A+ A V+A+QN Sbjct: 1452 KL--------NGVRADVRTKETNLGNLIADGM-----------LDAAQAAGTNAVIALQN 1492 Query: 1233 GGGIRAAIDKGDITMGEVLTTLPFGNSLAALKVTGAEIIXXXXXXXXXXXXDQGRFAQVS 1292 GGGIR +I+ G ITMG+V+T LPF N L + +TGAEI GRF ++ Sbjct: 1493 GGGIRESIEAGKITMGDVMTVLPFNNDLVTITLTGAEIKEAMENGVSKTPAQDGRFPHIA 1552 Query: 1293 GMKYTYDSTKKPEIVDSLTGQVTQAGERIVSVEIRQTDGSYLPIDPNAYYLLSTNSFMAG 1352 GM++ YDSTK G R++ +E++ +G Y PID N Y ++TN+F A Sbjct: 1553 GMRFYYDSTKP-------------VGSRVLRIEVKGKNG-YEPIDMNKSYEVATNAFTAK 1598 Query: 1353 GGDFYRALAGAKADGRYYELGLPDFEVLLSYLKLHHPINSK---VEGRITDLK 1402 GGDFY +L A +GR L PD+EV +Y+K I +K VEGRI+DLK Sbjct: 1599 GGDFYASLEKAYLEGRVNLLYKPDYEVFSNYVKKVGTITAKTSAVEGRISDLK 1651 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 122/322 (37%), Positives = 183/322 (56%), Gaps = 35/322 (10%) Query: 24 VISQVYGGGGNSGAKYKNDFIELYNPTDTDIDLTGWKVRYASASGSFGDNAKSFTPLSGS 83 VISQVYGGGGNSGA + +DFIEL+NPT + +DLTGWKVRYASA+G+F + A L+G Sbjct: 44 VISQVYGGGGNSGASFTHDFIELFNPTSSPVDLTGWKVRYASATGTFNNTAS----LTGI 99 Query: 84 VPAGGYFLVQ-EAAGTGGTDALPAPNLIAEGDAVLSMSGTNGKVELLDASGTRVDLVGYG 142 + Y+L+Q +++G+ G +LP A+ L++SG+NGKV+L++ +G R+DL+GYG Sbjct: 100 IEPYAYYLIQLQSSGSVGA-SLPT----ADAAGALNLSGSNGKVDLVNTAGDRIDLIGYG 154 Query: 143 SASEYEGTPGIEGSGPAPALSNTTAAVRKSSSLLPDGNRGLDTDRNLSDFAVQAPEPRSS 202 SASEYE + P ALSN+TAA+RK + +RGLDTD N +DF V P+PR+S Sbjct: 155 SASEYE-------TSPTAALSNSTAAIRKELT-FGQKDRGLDTDNNAADFIVITPDPRNS 206 Query: 203 G---TDSTKAPAVSASIASGQ--TVPKGTKXXXXXXXXXXXXXXXXXXDGSTSAVEDFAL 257 T T + A A+ + P GT+ G + + L Sbjct: 207 ASPVTPVTPGSGLGAVTANPEPNAWPAGTEITLNPPTVGASVYADVYRSGGNGS--GYQL 264 Query: 258 YKTPILLQDDTVLIKAYSAEEGKTDSGISQFSYTTKEAISGLTIPKIQGTVQSSTYAGQL 317 P++L + T ++AY+A++G+ D +S F Y + ++ ++ + S G+ Sbjct: 265 VNGPVILNEPT-RVEAYAAQDGQPDGPVSSFQY---DILTQTSVADAR-----SKAKGEH 315 Query: 318 VKDVAGIVTYTSGSTFYIQTAT 339 V G++T+ G YIQ T Sbjct: 316 VW-TEGVITHIEGRETYIQDDT 336 Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 123/387 (31%), Positives = 190/387 (49%), Gaps = 17/387 (4%) Query: 1462 TITAADLTSKLAALPGGTSELVIPLNASSGGAQVVLPGSVLVQQAASNPAAVLTFTVPGG 1521 ++T A + L GG + + + V + L A VL P G Sbjct: 1713 SVTGAAMKEALKQPVGGNVTVEVTSTQPISSSSVTIENEALRAWLDQTSAQVLVVATPYG 1772 Query: 1522 ASYSLPLRVLNGTALAAQLGTSDFTVTVXXXXXXXXXXXXXXXXXXXXGGPLTLAAPVME 1581 SY LP ++ ALAAQ G+ ++ + A + Sbjct: 1773 -SYELPKTEIDLQALAAQAGSDMNSLQLVIQLAVDADALKSAASKGYK------ALQAVS 1825 Query: 1582 FTVTAQAGS-SSVSLNNFGSTYVKRTLTAPGVLNPQGSTAVSFDPATGKLSFVPSVFTGK 1640 +TVT ++GS + +L++F TYVKR+L V T ++ G + P F K Sbjct: 1826 YTVTVKSGSGKAFTLDSF-QTYVKRSLN---VDKSHALTDIAVVRVDGNGEYTPVPF--K 1879 Query: 1641 PDGTTEVAIKRNSNSFYTVVKSGRTFGDITGHWAKASIDLLASKLIITGTSATAFQPSQM 1700 +G + I +NS Y V+++ TF DI HW+K ++ LA+++I+TG + F P+ Sbjct: 1880 VNG-QRIDIYSRTNSTYLVLQNPVTFQDIASHWSKGEVESLAAQMIVTGRTDQTFVPNAP 1938 Query: 1701 VTRAEFAALITRSLGLASMSSGVTFSDVGANAWYTDAVKTAAAAGLITGYTDGSFKPASP 1760 VTRAEFAAL+ R+LGL++ ++ +F DV ++ WY A++ A A +I GYTDG+FKP Sbjct: 1939 VTRAEFAALVVRALGLSADAASGSFQDVASSDWYAGAIQAAVDADIINGYTDGTFKPNRT 1998 Query: 1761 ITRQEMAAIMAKAMRYTGKSLNVGPAALAKFSDASVIPAWSRXXXXXXXXXXXXQGRPDG 1820 ITR+EMA + A+ Y G N A A F+DAS I AWS+ G P Sbjct: 1999 ITREEMAVMAYNALEYAG--YNPVDVAKAHFADASSIGAWSQAAVYELAALDILNGDPKQ 2056 Query: 1821 SFAPQALATRAEAATMLEKTLKSLQFI 1847 F P++ ATR E+A +L + ++ L ++ Sbjct: 2057 RFNPESNATRGESAAVLHRLMQDLTYV 2083 >Q2BFS8.1 Q2BFS8_9BACI Endonuclease/Exonuclease/phosphatase family protein Length = 1532 Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust. Identities = 317/668 (47%), Positives = 421/668 (63%), Gaps = 22/668 (3%) Query: 199 PRSSGT---DSTKAPAVSASIASGQTVPKGTKXXXXXXXXXXXXXXXXXXDGSTSAVEDF 255 PR++G DS+K AV A+ ASG V +G DGS E+ Sbjct: 427 PRNAGDIILDSSKVQAVVANPASG-LVNEG--DAVTLTTGTEGAAIYYTTDGSNPD-ENS 482 Query: 256 ALYKTPILLQDDTVLIKAYSAEEGKTDSGISQFSYTTKEAISGLTIPKIQGTVQSSTYAG 315 +Y PI + + T IKA + + G TDS ++ F+Y ++ + I IQG S Y Sbjct: 483 TVYSGPITISEATT-IKAVAVKSGMTDSDVAVFNYAIQK--EEIRIHDIQGEGHYSLYQD 539 Query: 316 QLVKDVAGIVTYTSGS-TFYIQTATPDSDPRTSEAIMVYLPGNKVKAADSVLVDGWVKEY 374 V ++ GIVT S FY+Q PD + +T+E I+VY + + + V V G VKEY Sbjct: 540 SNVNNIEGIVTKVVDSRNFYMQDPQPDDNDKTAEGILVYRSNHGLTVGNKVKVSGTVKEY 599 Query: 375 KESGYADA--TDLLTTEIAATQATVLSSNNPLPAPTVIGTGGRTIPATTISVGLDKELDP 432 GYA+ TDL TEI+A+ V + LPAP ++G R IP I E DP Sbjct: 600 VLDGYAEKAQTDLPVTEISASAIEVTEAEAELPAPVILGVD-RQIPTEIIDNDGFAEFDP 658 Query: 433 AKYALDFYESLEGMRVQLITPKIIGPFDYEIPVTVNNGASTTEVSSPAGGLVLTGADFNP 492 + +DF+ESLEGM V++ +PK++ P Y V V + E ++ GGL +T D NP Sbjct: 659 EEDGIDFWESLEGMLVEVNSPKVVAPQKYGELVVV---PGSYETNTDNGGLRITEEDMNP 715 Query: 493 QRI-LIAAQPGTPVRTGQVFKGNITGVLGYDYGNFKVHPEGA-LPEVDKGTSIERETTPL 550 +R+ L+ + G F G++ GV+ Y + N+KV + LPE + IERETT L Sbjct: 716 ERVTLLIDDESFVAKMGDHFNGSVQGVVSYGFSNYKVLTDKTDLPEFVEA-DIERETTSL 774 Query: 551 KAGADKLTVASFNVENFSLKSGSTKIENIAKAIVTNLNTPDILGLLEVQDNDGDTNSGTV 610 DKLT+AS+NVENFS + KIE +A+A+V NL PDI+GL EVQDN+G+TN GT Sbjct: 775 TKEEDKLTIASYNVENFSPAVSADKIERLARAVVENLKRPDIIGLTEVQDNNGETNDGTT 834 Query: 611 DATDSYKALIDAIKKQGGPTYAFTDIAPVNNMDGGAPGGNIRAGFIYNTERVQLAEGT-K 669 DAT+S+ L IK+ GGP Y++TDIAPVNN DGGAPGGNIR GF+YN ERV L EG K Sbjct: 835 DATESFNVLAAKIKELGGPQYSYTDIAPVNNQDGGAPGGNIRVGFLYNAERVSLTEGAPK 894 Query: 670 GDATTAVAYTKDGGLSLNPGRIDPTNPAFANSRKPLAAEFIFNNKKVMVIANHFNSKTGD 729 G +T +V + ++G L+LNPGRIDPTN A+ +SRKPLAA+F F + V+V+ANHFNSK GD Sbjct: 895 GTSTQSVGF-ENGKLTLNPGRIDPTNEAYKSSRKPLAAQFEFKGESVIVVANHFNSKGGD 953 Query: 730 SALYGGIQPPVLPSEAQRAEIATVVNGFVSDVLAKSPDANLVVLGDLNDFQFSNTLKILK 789 L+G +QPPVL SE QR +IA +VNGFV DV A+ P+AN+V+LGD NDF+FSN LK LK Sbjct: 954 QPLFGKVQPPVLGSEVQRMKIANIVNGFVKDVKAEDPNANIVLLGDFNDFEFSNPLKALK 1013 Query: 790 GSALTNLVDTLPLGERYSYVYQGNSQTLDHMLVNNKLATRSALDIVHINADFDEKEGRVS 849 G LTN+++ +P ERYSY YQGN+Q LDH+LV+N LA +A+DIVHIN+ F E+ GR S Sbjct: 1014 GQELTNMIEQVPAEERYSYSYQGNAQVLDHILVSNNLAAATAVDIVHINSGFMEEHGRAS 1073 Query: 850 DHDPLLTQ 857 DHDP+L Q Sbjct: 1074 DHDPVLIQ 1081 >C0Z7Q5.1 C0Z7Q5_BREBN Putative uncharacterized protein Length = 1829 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 311/682 (45%), Positives = 398/682 (58%), Gaps = 45/682 (6%) Query: 205 DSTKAPAVSASIASGQTVPKGTKXXXXXXXXXXXXXXXXXXDGSTSAVEDFALYKTPILL 264 D K P V+AS A G V KGTK DGST + Y PI + Sbjct: 607 DENKVPMVTASPA-GPMVTKGTKVTLSTTMADATIFYTV--DGSTPSRGSIK-YTGPIQI 662 Query: 265 QDDTVLIKAYSAEEGKTDSGISQFSYTTKEAISGLTIPKIQGTVQSSTYAGQLVKDVAGI 324 DT L A + ++G TDS ++ F Y ++ + I IQG S A V +V GI Sbjct: 663 DADTTL-SAIAVKDGYTDSNLTTFRYVIQK--DNIRIHDIQGASHRSPMADGTVTNVPGI 719 Query: 325 VTYTSGST-----FYIQTATPDSDPRTSEAIMVYLPGNKVKAADSVLVDGWVKEYKESGY 379 VT GS FY+Q D+DP TSE I VY P V D V V G VKEY S Sbjct: 720 VTAIVGSGSNVQGFYMQDPQSDADPFTSEGIYVYEPKATVAPGDEVTVSGTVKEYVPSNR 779 Query: 380 ADATDLLTTEIAATQATVLSSNNPLPAPTVIGTGGRTIPATTISVGLDKELDPAKYALDF 439 A TDL T+I AT V+ LP P ++G P I + DP + +DF Sbjct: 780 A-GTDLTQTQIDATSYAVVKPGQSLPEPLILGKDNYEYPKGIIDNDSLGKFDPDQDGIDF 838 Query: 440 YESLEGMRVQLITPKIIG-------PFDYEIPVTVNNGASTTEVSSPAGGLVLTGADFNP 492 +ESLEGM VQ+ P ++G P E V +++ A ++ +PAGG+VL DF+P Sbjct: 839 WESLEGMLVQIDNPIVVGETKTFTNPRATEF-VVIDDRAHLSQPRTPAGGVVLEANDFHP 897 Query: 493 QRILIAAQPGT---PVRTGQVFKGNITGVLGYDYGNFK--------VHPEGALPEVDKGT 541 +RI ++ + + V+ G F G + G++ Y + N+K V P P V Sbjct: 898 ERITVSDKLESITGEVKVGDKFDGPLVGIIDYSFANYKLFHTRSFTVQPSHYKPPV---- 953 Query: 542 SIERETTPLKAGADKLTVASFNVENFSLKSGSTKIENIAKAIVTNLNTPDILGLLEVQDN 601 T + DKLT+AS+N+ENFS K+ S KI IA+ IV N+ PDI+G++E+QDN Sbjct: 954 ------TSISPKEDKLTIASYNIENFSAKTDSAKINRIAETIVDNMKAPDIIGVVEMQDN 1007 Query: 602 DGDTNSGTVDATDSYKALIDAIKKQGGPTYAFTDIAPVNNMDGGAPGGNIRAGFIYNTER 661 +G T++G DAT S ALI A++ + GPTY + DIAP NN DGG PGGNIR GF YN R Sbjct: 1008 NGPTDNGQTDATQSADALIKAMENKNGPTYRYIDIAPQNNQDGGQPGGNIRVGFFYNPGR 1067 Query: 662 VQLAEGTKGDATTAVAY-TKDG--GLSLNPGRIDPTNPAFANSRKPLAAEFIFNNKKVMV 718 VQLA GT G AT AV T+DG LS NPGR+DPTN AFA+SRKPLAAEFIF + V+V Sbjct: 1068 VQLAAGTPGGATDAVQIETRDGVAHLSHNPGRVDPTNAAFASSRKPLAAEFIFQGEPVIV 1127 Query: 719 IANHFNSKTGDSALYGGIQPPVLPSEAQRAEIATVVNGFVSDVLAKSPDANLVVLGDLND 778 IANHFNSK GD AL+G QPP L SE QR +IA V+N FV ++ + AN+VVLGDLND Sbjct: 1128 IANHFNSKGGDQALFGKDQPPQLVSEVQRMKIARVLNSFVKEIHSAQAKANVVVLGDLND 1187 Query: 779 FQFSNTLKILKGSALTNLVDTLPLGERYSYVYQGNSQTLDHMLVNNKLATRSALDIVHIN 838 F FSN ++ L LTN+V+ LP GE+Y+YVYQGNSQ LD +LV+N L + +DIVHIN Sbjct: 1188 FPFSNPVQELADGVLTNMVEKLPKGEQYTYVYQGNSQVLDQILVSNHLEDDTKVDIVHIN 1247 Query: 839 ADFDEKEGRVSDHDPLLTQIDF 860 A E EGRVSDH+P+L Q+D Sbjct: 1248 AGLTENEGRVSDHNPVLVQLDL 1269 Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/192 (43%), Positives = 115/192 (59%), Gaps = 27/192 (14%) Query: 24 VISQVYGGGGNSGAKYKNDFIELYNPTDTDIDLTGWKVRYASASGSFGDNAKSFTPLSGS 83 VIS+VYGGGGNSGA YKNDFIELYNPTD + + GW V+YASA+G+ A L+GS Sbjct: 43 VISEVYGGGGNSGAHYKNDFIELYNPTDKAVSVGGWSVQYASATGTAWQKAG----LTGS 98 Query: 84 VPAGGYFLVQEAAGTGGTDALPAPNLIAEGDAVLSMSGTNGKVELLD-----------AS 132 + G++LVQ A LP P + L++SGTNGKV L++ + Sbjct: 99 IAPYGFYLVQLATSGAVGGELPTP----DDSGTLNLSGTNGKVALVNNGDPLTGADVTSQ 154 Query: 133 GTRVDLVGYGSASEYEGTPGIEGSGPAPALSNTTAAVRKSSS--LLPDGNRGLDTDRNLS 190 + VD+VG+G+A+ EG+ PAPA SNTT+ R S ++P+G G DT+ N + Sbjct: 155 ASVVDMVGFGTANSS------EGNSPAPAPSNTTSVQRISDERGIVPNGGNGWDTNNNGN 208 Query: 191 DFAVQAPEPRSS 202 DF AP P+++ Sbjct: 209 DFITGAPTPKNT 220 >C4L094.1 C4L094_EXISA Endonuclease/exonuclease/phosphatase Length = 1168 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 293/631 (46%), Positives = 382/631 (60%), Gaps = 39/631 (6%) Query: 258 YKTPILLQDDTVLIKAYSAEEGKTDSGISQFSYTTKEAISGLTIPKIQGTVQSSTYAGQL 317 Y+ PI +++ T L + G + S +S FSY + I I IQG ++ GQ Sbjct: 439 YENPIRIENSTTLKTV--VKTGDSFSAVSTFSYKITDKIR---IHDIQGANHTAPMNGQT 493 Query: 318 VKDVAGIVTYT---SGSTFY-IQT--ATPDSDPRTSEAIMVYLPGNK----VKAADSVLV 367 V+ V GIVT T SG+T+Y IQT A D D RTSE I++Y G + ++ D V V Sbjct: 494 VEGVEGIVTSTFVSSGTTYYFIQTPDAEADDDARTSEGIVLY--GGRSIAGIQVGDLVKV 551 Query: 368 DGWVKEYKESGYAD--ATDLLTTEIAAT--QATVLSSNNPLPAPTVIGTGGRTIPATTIS 423 +G V EY GY+D TD+ T+I + V++S LP P I +P I Sbjct: 552 NGKVSEYAIEGYSDRQQTDMKMTQIDTRNGKVEVVASGVTLPTPITID--ASNLPTEFID 609 Query: 424 VGLDKELDPAKYALDFYESLEGMRVQLITPKIIGPFDYEIPVTVNNGASTTEVSSPAGGL 483 +P K A+DF+ESLEGMRVQ K +GP +Y VTV T + GG+ Sbjct: 610 SDNLAVFNPEKDAIDFWESLEGMRVQTNNLKSVGPQEYGDLVTV---LEDTPTETYNGGV 666 Query: 484 VLTGADFNPQRILIAAQPGTPVR-----TGQVFKGNITGVLGYDYGNFKVHP--EGALPE 536 +L D NP+RI +P R TG F G I GV+GY +GN+K+ E Sbjct: 667 LLKKNDANPERIQFRLEPNAEAREFDVATGDRFNGPIVGVVGYSFGNYKIQASLEDMKAA 726 Query: 537 VDKGTSIERETTPLKAGADKLTVASFNVENFSLKSGSTKIEN---IAKAIVTNLNTPDIL 593 KG + +RE T ++A D+LT+AS+N+ENFS T E +AKA V LN+PDI+ Sbjct: 727 FVKGDA-QREKTFIEAEEDQLTIASYNLENFSNNIKETSDEKALKLAKAFVNELNSPDII 785 Query: 594 GLLEVQDNDGDTNSGTVDATDSYKALIDAIKKQGGPTYAFTDIAPVNNMDGGAPGGNIRA 653 G+ EVQDNDG A SY+ LID I GG TY + +I P NN DGGAP NIR Sbjct: 786 GVTEVQDNDGQDKGAGSAADQSYQRLIDNIVAVGGKTYKYVNIDPENNQDGGAPDANIRV 845 Query: 654 GFIYNTERVQLAEGT-KGDATTAVAYTKDGGLSLNPGRIDPTNPAFANSRKPLAAEFIFN 712 GF+Y+ ERV L EG GDATTAV Y DG L+ NPGRIDP N AF+ SRKPLAA+F F Sbjct: 846 GFLYDPERVSLTEGIPAGDATTAVGYA-DGKLTHNPGRIDPMNEAFSRSRKPLAAQFDFQ 904 Query: 713 NKKVMVIANHFNSKTGDSALYGGIQPPVLPSEAQRAEIATVVNGFVSDVLAKSPDANLVV 772 + V+VIANH+NSK GD+ +G QP VL SE QR +IA VV+ FV+DV K+P+AN+V Sbjct: 905 GENVIVIANHWNSKGGDTGFFGSQQPVVLGSEVQRKKIAQVVHNFVADVKTKNPEANVVA 964 Query: 773 LGDLNDFQFSNTLKILKGSALTNLVDTLPLGERYSYVYQGNSQTLDHMLVNNKLATRSAL 832 LGD NDF+FS+ L+I KG +TN+V+ +P +RYSYVYQGNSQ LDH+LV+N+LA + + Sbjct: 965 LGDFNDFEFSDALQIFKGDLMTNMVEKVPAVDRYSYVYQGNSQVLDHILVSNRLAASTKI 1024 Query: 833 DIVHINADFDEKEGRVSDHDPLLTQIDFGTE 863 D++H+N+DF E GR SDHDP+L QIDF E Sbjct: 1025 DMIHVNSDFTEMSGRASDHDPVLAQIDFTPE 1055 >A7GM07.1 A7GM07_BACCN Endonuclease/exonuclease/phosphatase Length = 790 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 266/621 (42%), Positives = 377/621 (60%), Gaps = 25/621 (4%) Query: 246 DGSTSAVEDFALYKTPILLQDDTVLIKAYSAEEGKTDSGISQFSYTTKEAISGLTIPKIQ 305 DGS + Y+ PI+LQ+DTV I+A +EG S ++ FS+T + + I IQ Sbjct: 183 DGSEPTNQSIRYYE-PIVLQEDTV-IQAIGVKEGSESSPVATFSFTVVKG-EKVHIHDIQ 239 Query: 306 GTVQSSTYAGQLVKDVAGIVTYTSGSTFYIQTATPDSDPRTSEAIMVYLPGNKVKAADSV 365 G S G+ V++V GIVT FY+Q A PD DP TSE I VY VK D V Sbjct: 240 GKAHISPCKGKKVRNVEGIVTALDKYGFYMQDAQPDDDPATSEGIYVYQKDADVKVGDVV 299 Query: 366 LVDGWVKEYKESGYAD--ATDLLTTEIAATQATVLSSNNPLPAPTVIGTGGRTIPATTIS 423 VDG V+E+ +GYA+ TDL TTEI AT+AT+ +S+ PLP V+G G IP I Sbjct: 300 QVDGQVEEHVGAGYAERFETDLTTTEIKATRATIKASHVPLPEAVVLGEHGVKIPDEIID 359 Query: 424 VGLDKELDPAKYALDFYESLEGMRVQLITPKIIGPFDY-EIPVTVNNGASTTEVSSPAGG 482 DP + A+DFYESLEGMRV L TPK++ P + + VT+ NG++ +V + G Sbjct: 360 NDAFGVFDPQEDAIDFYESLEGMRVTLPTPKVVAPQKHGNLYVTIANGSN--KVVTKYGT 417 Query: 483 LVLTGADFNPQRILIAAQPGTPVRTGQVFKGNITGVLGYDYGNFKVHPEGALPEVDKGTS 542 +L+ NP+R+ + + G F G+ITGV+GYDY +++ P LP V G Sbjct: 418 PLLSETQLNPERLSLKVPRNHVAKVGDTFNGDITGVVGYDYSAYRISPVTELPSVIDG-G 476 Query: 543 IERETTPLKAGADKLTVASFNVENFSLKSGST---KIENIAKAIVTNLNTPDILGLLEVQ 599 ++ ++ ++TVA++N+ENFS T K++ +A +I NL PDI+G+ E+Q Sbjct: 477 FKQVGAKIQPRLGRVTVATYNMENFSANQKETSDEKVKALAYSIKYNLKMPDIIGVQEMQ 536 Query: 600 DNDGDTNSGTVDATDSYKALIDAIKKQGGPTYAFTDIAPVNNMDGGAPGGNIRAGFIYNT 659 DN+G N GT DA+ S K +IDA++ GP Y + ++AP+NN DGGAPG NIR GF YN+ Sbjct: 537 DNNGTINDGTTDASLSAKRIIDAVQAIHGPKYEYVEVAPLNNQDGGAPGANIRVGFFYNS 596 Query: 660 ERVQLAEGTKGDATTAVAYTKDGGLSLNPGRIDPTNPAFANSRKPLAAEFIFNNKKVMVI 719 RV+LA+ K L NP RI NP F ++RKPLAAEF F + ++VI Sbjct: 597 SRVKLADQPKL-------------LETNPTRIGQDNPLFESTRKPLAAEFTFQGQHLVVI 643 Query: 720 ANHFNSKTGDSALYGGIQPPVLPSEAQRAEIATVVNGFVSDVLAKSPDANLVVLGDLNDF 779 +NH NSK GD+ +G IQP V SE +R ++A VN FV + + +A +VV+GD+NDF Sbjct: 644 SNHLNSKIGDAPPFGSIQPLVWKSEEKRVQLAQEVNRFVKGIQKRDANAPVVVVGDMNDF 703 Query: 780 QFSNTLKILKGSALTNLVDTLPLGERYSYVYQGNSQTLDHMLVNNKLATRSALDIVHINA 839 +FS L+ LKG L N+++T+ RY+Y+++GN+Q LDH+LV N +A + +D VH+N Sbjct: 704 EFSKPLQALKGDTLQNMLETVSKENRYTYIHEGNAQVLDHILVTNNIANHTIVDPVHLNT 763 Query: 840 DFDEKEGRVSDHDPLLTQIDF 860 + ++ GRVSDHDP+L QID Sbjct: 764 NMMKEHGRVSDHDPVLAQIDL 784 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.131 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 10,287,353,136 Number of extensions: 449770759 Number of successful extensions: 974044 Number of sequences better than 1.0e-05: 3846 Number of HSP's gapped: 960416 Number of HSP's successfully gapped: 4238 Length of query: 1848 Length of database: 3,060,696,203 Length adjustment: 151 Effective length of query: 1697 Effective length of database: 1,638,122,938 Effective search space: 2779894625786 Effective search space used: 2779894625786 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 139 (58.2 bits)