BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0002.p (431 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K825.1 B3K825_9BACI Seryl-tRNA synthetase EC=6.1.1.11 508 e-142 B1DCF5.1 B1DCF5_9BACL Seryl-tRNA synthetase EC=6.1.1.11 493 e-137 Q5WI42.1 Q5WI42_BACSK Seryl-tRNA synthetase EC=6.1.1.11 474 e-131 B9J1Q9.1 B9J1Q9_BACCQ SerS 456 e-126 B7HT09.1 B7HT09_BACC7 Seryl-tRNA synthetase EC=6.1.1.11 456 e-126 >B3K825.1 B3K825_9BACI Seryl-tRNA synthetase EC=6.1.1.11 Length = 433 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 247/424 (58%), Positives = 302/424 (71%), Gaps = 3/424 (0%) Query: 1 MLDMNWIR---DNEELMRNTAVWKKVDFPLEDLLEWDDKXXXXXXXXXXXXXXXNGLTKE 57 MLDM WIR D++E ++ A K + + +L+ DD+ N +++E Sbjct: 1 MLDMKWIRESTDHQEELQQVADRKGIALSVAELVRLDDQRRTLLLAVEALRQQRNAISQE 60 Query: 58 VERLLRQXXXXXXXXXXXQVREINAHLTKLEADLTEAEQRCSELLLLAPNPVSADTPIGA 117 + L+RQ QV+ IN L + E E + +ELL+L PN VS DTP+GA Sbjct: 61 ISALVRQGKPDEAERQKQQVKTINEELDQQETLYREVNEAYNELLILVPNIVSPDTPVGA 120 Query: 118 DDSGNVELRRNGTLPDFGFTARDHVELGELHSIIDIPRGVKAGGPRSYVLKGAGLYLHLA 177 D NVE+RR G LP F + RDHV LGELH ++DIPRGVK G RSY L G G LH A Sbjct: 121 SDEDNVEIRRVGELPVFDYEFRDHVTLGELHRMVDIPRGVKTAGTRSYYLTGIGAMLHRA 180 Query: 178 VQRLALDVLAERGFTVMDVPVIVRPEALERTGFFPGGMDQTYELNGEKRWLAGTSEVSLV 237 VQ+LA+D+L +GF +MDVP+ VR EA++ T FFP G DQ +++ + +WL GTSEV LV Sbjct: 181 VQQLAVDMLVAKGFALMDVPLTVRTEAMQNTAFFPLGQDQAFQITEQDKWLVGTSEVPLV 240 Query: 238 SLYSDEIVEAEVPLRLAGMSACFRREVGSAGRDVRGLYRVHQFSKIEQVVICKNDPAESE 297 S YS EIV+ P+RLA S CFR EVGS GRDV GLYRVHQF+K+EQVV+C+ SE Sbjct: 241 SFYSGEIVDVAEPIRLAAASLCFRSEVGSGGRDVHGLYRVHQFAKVEQVVLCEASTEASE 300 Query: 298 QMLQEILANAEHILQLLELPYRVVAVCSGDMALKTHKQYDIETWMPSRGAYGETHSASNL 357 Q+LQEI ANAE +LQ LELPYRVVAVC+GDM+ KT+KQYDIETWMPSRGAYGETHS+SNL Sbjct: 301 QLLQEITANAEELLQKLELPYRVVAVCTGDMSQKTYKQYDIETWMPSRGAYGETHSSSNL 360 Query: 358 LDFQARRSGIRFRDKDGRLQYCHTLNNTAVATPRILIPLLENHQQEDGSIYIPKALRKYM 417 LDFQARRS IR+RD +G+L+YCHTLNNTAVA+PRILIPLLENHQQ DGSI IPKALR YM Sbjct: 361 LDFQARRSNIRYRDAEGKLRYCHTLNNTAVASPRILIPLLENHQQPDGSILIPKALRPYM 420 Query: 418 DGQE 421 +G E Sbjct: 421 NGME 424 >B1DCF5.1 B1DCF5_9BACL Seryl-tRNA synthetase EC=6.1.1.11 Length = 425 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 238/424 (56%), Positives = 300/424 (70%) Query: 1 MLDMNWIRDNEELMRNTAVWKKVDFPLEDLLEWDDKXXXXXXXXXXXXXXXNGLTKEVER 60 MLD+ WIR+N E ++ A K + + L+E DD N +E+ Sbjct: 1 MLDIKWIRNNREEVQTVADRKGIAISISQLVEVDDARRRLQQEIEELRQERNQTIQEINL 60 Query: 61 LLRQXXXXXXXXXXXQVREINAHLTKLEADLTEAEQRCSELLLLAPNPVSADTPIGADDS 120 + +++EIN + LE + + ++L+ + PN VS DTPIG D Sbjct: 61 SIYSSDEKDVEQKKLRMKEINQRIASLETEQRAVQAEYADLMQIVPNIVSPDTPIGKSDQ 120 Query: 121 GNVELRRNGTLPDFGFTARDHVELGELHSIIDIPRGVKAGGPRSYVLKGAGLYLHLAVQR 180 NVE+RR G P F F +DHV+LGELH +I+IPRGVK G R+Y L GAG LH AVQ+ Sbjct: 121 DNVEVRRFGEPPIFDFEIKDHVKLGELHQMINIPRGVKTAGSRNYYLTGAGAALHRAVQQ 180 Query: 181 LALDVLAERGFTVMDVPVIVRPEALERTGFFPGGMDQTYELNGEKRWLAGTSEVSLVSLY 240 LALD+L RGFT+++VP++VR EAL TGFFP G DQTY ++G ++L GTSEV L+S Y Sbjct: 181 LALDLLMARGFTLLEVPLMVRKEALFNTGFFPLGEDQTYRIDGGDKYLVGTSEVPLISFY 240 Query: 241 SDEIVEAEVPLRLAGMSACFRREVGSAGRDVRGLYRVHQFSKIEQVVICKNDPAESEQML 300 +EIV+A P+RLA S CFR EVGSAG+DV GLYRVHQFSK+EQV+IC++ SEQML Sbjct: 241 DNEIVDASKPIRLAAASTCFRSEVGSAGKDVHGLYRVHQFSKVEQVIICEDSVEASEQML 300 Query: 301 QEILANAEHILQLLELPYRVVAVCSGDMALKTHKQYDIETWMPSRGAYGETHSASNLLDF 360 QEI NAE +LQ LELPYRV+AVC+GDM+ KT+KQ+DIETWMPSR A+GETHS+SNLLDF Sbjct: 301 QEITQNAEDLLQQLELPYRVMAVCTGDMSQKTYKQFDIETWMPSRQAFGETHSSSNLLDF 360 Query: 361 QARRSGIRFRDKDGRLQYCHTLNNTAVATPRILIPLLENHQQEDGSIYIPKALRKYMDGQ 420 QARRS IR+RD G+L++CHTLNNTAVA+PRILIPLLE HQ+EDGSI IP+ALRKYM+G Sbjct: 361 QARRSNIRYRDAQGKLRFCHTLNNTAVASPRILIPLLETHQEEDGSIRIPEALRKYMNGM 420 Query: 421 EFLH 424 E L Sbjct: 421 ERLQ 424 >Q5WI42.1 Q5WI42_BACSK Seryl-tRNA synthetase EC=6.1.1.11 Length = 425 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 226/423 (53%), Positives = 295/423 (69%) Query: 1 MLDMNWIRDNEELMRNTAVWKKVDFPLEDLLEWDDKXXXXXXXXXXXXXXXNGLTKEVER 60 MLD+ WIR N+ ++ A K + + L+E+DD+ N L++E+ Sbjct: 1 MLDIKWIRQNQAEVQTIADQKGIPISIHQLVEYDDRRRALLHELEQLRQDRNRLSQEISV 60 Query: 61 LLRQXXXXXXXXXXXQVREINAHLTKLEADLTEAEQRCSELLLLAPNPVSADTPIGADDS 120 +R +V+EIN L +E + E E +L+L PN VS DTP+G D Sbjct: 61 FMRSHEREKVDHHKKRVKEINQRLHTIEEEHKEVEGHYKQLMLYVPNVVSPDTPVGGSDH 120 Query: 121 GNVELRRNGTLPDFGFTARDHVELGELHSIIDIPRGVKAGGPRSYVLKGAGLYLHLAVQR 180 NVE++R G F F +DHV LG+LH +ID+PRGVK G R+Y L G LH AVQ+ Sbjct: 121 DNVEIKRVGEPTTFAFEPKDHVALGKLHQMIDLPRGVKTAGSRNYYLTDMGALLHRAVQQ 180 Query: 181 LALDVLAERGFTVMDVPVIVRPEALERTGFFPGGMDQTYELNGEKRWLAGTSEVSLVSLY 240 LA+DVL +RGF +++VP++VR EAL T FP +QT+++ E +WL GTSEV LVS Y Sbjct: 181 LAIDVLVQRGFKLLEVPLMVRTEALLNTAHFPLSQEQTFKMAEEDKWLVGTSEVPLVSYY 240 Query: 241 SDEIVEAEVPLRLAGMSACFRREVGSAGRDVRGLYRVHQFSKIEQVVICKNDPAESEQML 300 E+++ P+RLA +S CFR EVGSAG+DV GLYR+HQF+K+EQV++C+ + SEQ+ Sbjct: 241 DHEMIDVAEPIRLAAVSTCFRNEVGSAGKDVHGLYRLHQFAKVEQVILCEANLDISEQLF 300 Query: 301 QEILANAEHILQLLELPYRVVAVCSGDMALKTHKQYDIETWMPSRGAYGETHSASNLLDF 360 QEI ANAE IL LLELPYR++AVC+GDM+ KT+KQ+DIETWMPSR YGETHSASNLLDF Sbjct: 301 QEITANAEEILSLLELPYRIMAVCTGDMSQKTYKQWDIETWMPSRHGYGETHSASNLLDF 360 Query: 361 QARRSGIRFRDKDGRLQYCHTLNNTAVATPRILIPLLENHQQEDGSIYIPKALRKYMDGQ 420 QARRS IR+RD DG+ Q+C+TLNNTA+A+PRILIPLLENHQQEDGSI IP AL++YM G+ Sbjct: 361 QARRSNIRYRDADGKTQFCYTLNNTAIASPRILIPLLENHQQEDGSIRIPLALQRYMQGR 420 Query: 421 EFL 423 E L Sbjct: 421 ERL 423 >B9J1Q9.1 B9J1Q9_BACCQ SerS Length = 427 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/426 (51%), Positives = 295/426 (69%), Gaps = 1/426 (0%) Query: 1 MLDMNWIRDNEELMRNTAVWKKVDFPLEDLLEWDDKXXXXXXXXXXXXXXXNGLTKEVER 60 MLD+N+IR++++ + A K ++ +E +++ D + L+ +++ Sbjct: 1 MLDINFIRNHQQDLSLIANQKGINISIERIIQLDFERRKLIHDIELARFTKKKLSNDMKD 60 Query: 61 -LLRQXXXXXXXXXXXQVREINAHLTKLEADLTEAEQRCSELLLLAPNPVSADTPIGADD 119 +L+ Q+ EIN L + +L + L+LL PN +S+DTPIG D Sbjct: 61 FVLKGDNQHLIKSIKLQIDEINKSLKANQQNLESILNEYNTLMLLVPNIISSDTPIGLSD 120 Query: 120 SGNVELRRNGTLPDFGFTARDHVELGELHSIIDIPRGVKAGGPRSYVLKGAGLYLHLAVQ 179 NV ++ G P F F+ +DH+ELG IIDI RGVK G R+Y LK G LH AVQ Sbjct: 121 KDNVVVKECGRKPTFTFSIKDHIELGHSLDIIDIKRGVKVAGTRNYYLKNMGASLHRAVQ 180 Query: 180 RLALDVLAERGFTVMDVPVIVRPEALERTGFFPGGMDQTYELNGEKRWLAGTSEVSLVSL 239 +LA+D L ++GFT+++VP +V E TGFFP G DQTY+L ++L GTSEV +VS Sbjct: 181 QLAIDHLIQKGFTLLEVPAMVNEEMFINTGFFPIGQDQTYKLANSNKYLIGTSEVPIVSY 240 Query: 240 YSDEIVEAEVPLRLAGMSACFRREVGSAGRDVRGLYRVHQFSKIEQVVICKNDPAESEQM 299 YS+E V E P++LAG+S CFR EVG+AGRDV+GLYRVHQFSK+EQV++C+N+ +S + Sbjct: 241 YSNEFVNIEKPIKLAGISNCFRSEVGAAGRDVKGLYRVHQFSKVEQVILCENNVEKSNLI 300 Query: 300 LQEILANAEHILQLLELPYRVVAVCSGDMALKTHKQYDIETWMPSRGAYGETHSASNLLD 359 L+EI NAE ILQLLELPYRVV+VC+GD+ K+YDIETWMPSR +YGET SASNLLD Sbjct: 301 LEEITQNAEEILQLLELPYRVVSVCTGDIGQGVFKKYDIETWMPSRNSYGETQSASNLLD 360 Query: 360 FQARRSGIRFRDKDGRLQYCHTLNNTAVATPRILIPLLENHQQEDGSIYIPKALRKYMDG 419 FQ+RRS IR++D +G ++YCHTLNNTA+ATPRILIPLLE HQQEDGSIYIP+ALRKY++ Sbjct: 361 FQSRRSKIRYKDNNGEIKYCHTLNNTAIATPRILIPLLEVHQQEDGSIYIPRALRKYLNN 420 Query: 420 QEFLHA 425 QE++ + Sbjct: 421 QEYIES 426 >B7HT09.1 B7HT09_BACC7 Seryl-tRNA synthetase EC=6.1.1.11 Length = 427 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/426 (51%), Positives = 295/426 (69%), Gaps = 1/426 (0%) Query: 1 MLDMNWIRDNEELMRNTAVWKKVDFPLEDLLEWDDKXXXXXXXXXXXXXXXNGLTKEVER 60 MLD+N+IR++++ + A K ++ +E +++ D + L+ +++ Sbjct: 1 MLDINFIRNHQQDLSLIANQKGINISIERIIQLDFERRKLIHDIELARFTKKKLSNDMKD 60 Query: 61 -LLRQXXXXXXXXXXXQVREINAHLTKLEADLTEAEQRCSELLLLAPNPVSADTPIGADD 119 +L+ Q+ EIN L + +L + L+LL PN +S+DTPIG D Sbjct: 61 FVLKGDNQHLIKSIKLQIDEINKSLKANQQNLESILNEYNTLMLLVPNIISSDTPIGLSD 120 Query: 120 SGNVELRRNGTLPDFGFTARDHVELGELHSIIDIPRGVKAGGPRSYVLKGAGLYLHLAVQ 179 NV ++ G P F F+ +DH+ELG IIDI RGVK G R+Y LK G LH AVQ Sbjct: 121 KDNVVVKECGRKPTFTFSIKDHIELGHSLDIIDIKRGVKVAGTRNYYLKNMGASLHRAVQ 180 Query: 180 RLALDVLAERGFTVMDVPVIVRPEALERTGFFPGGMDQTYELNGEKRWLAGTSEVSLVSL 239 +LA+D L ++GFT+++VP +V E TGFFP G DQTY+L ++L GTSEV +VS Sbjct: 181 QLAIDHLIQKGFTLLEVPAMVNEEMFINTGFFPIGQDQTYKLANSNKYLIGTSEVPIVSY 240 Query: 240 YSDEIVEAEVPLRLAGMSACFRREVGSAGRDVRGLYRVHQFSKIEQVVICKNDPAESEQM 299 YS+E V E P++LAG+S CFR EVG+AGRDV+GLYRVHQFSK+EQV++C+N+ +S + Sbjct: 241 YSNEFVNIEKPIKLAGISNCFRSEVGAAGRDVKGLYRVHQFSKVEQVILCENNVEKSNLI 300 Query: 300 LQEILANAEHILQLLELPYRVVAVCSGDMALKTHKQYDIETWMPSRGAYGETHSASNLLD 359 L+EI NAE ILQLLELPYRVV+VC+GD+ K+YDIETWMPSR +YGET SASNLLD Sbjct: 301 LEEITQNAEEILQLLELPYRVVSVCTGDIGQGVFKKYDIETWMPSRNSYGETQSASNLLD 360 Query: 360 FQARRSGIRFRDKDGRLQYCHTLNNTAVATPRILIPLLENHQQEDGSIYIPKALRKYMDG 419 FQ+RRS IR++D +G ++YCHTLNNTA+ATPRILIPLLE HQQEDGSIYIP+ALRKY++ Sbjct: 361 FQSRRSKIRYKDNNGEIKYCHTLNNTAIATPRILIPLLEVHQQEDGSIYIPRALRKYLNN 420 Query: 420 QEFLHA 425 QE++ + Sbjct: 421 QEYIES 426 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,498,130,794 Number of extensions: 103912349 Number of successful extensions: 219659 Number of sequences better than 1.0e-05: 1938 Number of HSP's gapped: 212845 Number of HSP's successfully gapped: 1956 Length of query: 431 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 292 Effective length of database: 1,751,175,118 Effective search space: 511343134456 Effective search space used: 511343134456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)