BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0001.p (184 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4L0.1 B3K4L0_9BACI NADPH-dependent FMN reductase 250 3e-65 B4BMT0.1 B4BMT0_9BACI NADPH-dependent FMN reductase 203 4e-51 Q9K7P0.1 Q9K7P0_BACHD NADH-dependent FMN reductase EC=1.5.1.29 186 6e-46 B1DKV9.1 B1DKV9_9BACL NADPH-dependent FMN reductase 185 2e-45 Q3MDU8.1 Q3MDU8_ANAVT NADPH-dependent FMN reductase EC=1.5.1.29 181 2e-44 >B3K4L0.1 B3K4L0_9BACI NADPH-dependent FMN reductase Length = 181 Score = 250 bits (639), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/180 (68%), Positives = 149/180 (82%) Query: 1 MAKIVVINGTPSLVSRVNAVIEYAEANLRGRGFEVERINVAELPAEDLIHTKFESEAIVK 60 MAK V+ING+P+ SR+NAV+++AE L FEV RI+VA LP EDLIHTKFESE IVK Sbjct: 1 MAKAVIINGSPTAGSRLNAVMDFAEQALAAANFEVSRIDVAGLPPEDLIHTKFESEHIVK 60 Query: 61 ANGLVAEADAVIVVSPVYKASYTGVLKTFLDLIPEKGLAGKILLPLFMGGSLAHLLTIEY 120 ANGLVAEADAVIV SPVYKAS+TGVLKTFLDLIP+KGLAGKI+LP+F+GGSLAHLL I+Y Sbjct: 61 ANGLVAEADAVIVASPVYKASFTGVLKTFLDLIPQKGLAGKIVLPMFIGGSLAHLLAIDY 120 Query: 121 ALKPVLSVLGARHILGGVYAVDSQAVRNDQGAVELADELRLRLDSVLAELAEETSHKAAR 180 +LKPVLS +GARHILGGVYAVD+Q R + G ++A+ L+ RL S + EL EET ++ R Sbjct: 121 SLKPVLSSIGARHILGGVYAVDAQVARTEDGGFDVAEVLQERLASAMEELIEETRYRTER 180 >B4BMT0.1 B4BMT0_9BACI NADPH-dependent FMN reductase Length = 183 Score = 203 bits (517), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 100/171 (58%), Positives = 127/171 (74%) Query: 1 MAKIVVINGTPSLVSRVNAVIEYAEANLRGRGFEVERINVAELPAEDLIHTKFESEAIVK 60 M+ IV+ING+PS SR+N +I+YA+ L+ GF VE I+VAELP EDL+ +++S AI Sbjct: 1 MSDIVIINGSPSSTSRLNGLIDYADQTLQQAGFTVENIHVAELPPEDLLRARWDSPAISA 60 Query: 61 ANGLVAEADAVIVVSPVYKASYTGVLKTFLDLIPEKGLAGKILLPLFMGGSLAHLLTIEY 120 AN VA A VI+ SPVYKASYTGVLK +LDL+P+KGL K++LPLF+GGSLAHLL ++Y Sbjct: 61 ANEKVANARGVIIASPVYKASYTGVLKAYLDLLPQKGLQHKVVLPLFIGGSLAHLLVMDY 120 Query: 121 ALKPVLSVLGARHILGGVYAVDSQAVRNDQGAVELADELRLRLDSVLAELA 171 LKPVLS LGAR++LGGVYAVD R G L +EL RLD L+E + Sbjct: 121 GLKPVLSALGARYVLGGVYAVDQWVTRLPDGGYTLPEELTNRLDENLSEFS 171 >Q9K7P0.1 Q9K7P0_BACHD NADH-dependent FMN reductase EC=1.5.1.29 Length = 178 Score = 186 bits (473), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 90/172 (52%), Positives = 121/172 (70%), Gaps = 2/172 (1%) Query: 1 MAKIVVINGTPSLVSRVNAVIEYAEANLRGRGFEVERINVAELPAEDLIHTKFESEAIVK 60 M K+V I G+P++ SR + + Y E LR G +VE I V +LP EDL+H F+SE + + Sbjct: 1 MKKVVSIVGSPAITSRTSILTRYVEKALREAGVDVETIYVRDLPPEDLLHVNFQSEPLKR 60 Query: 61 ANGLVAEADAVIVVSPVYKASYTGVLKTFLDLIPEKGLAGKILLPLFMGGSLAHLLTIEY 120 + +VA AD VIV SPVYKASYTG+LKT+LDL+P+ GL K +LPL GG+ HLL I+Y Sbjct: 61 THSMVAAADGVIVASPVYKASYTGILKTYLDLLPQDGLRNKAVLPLMSGGTFGHLLAIDY 120 Query: 121 ALKPVLSVLGARHILGGVYAVDSQAVRNDQ--GAVELADELRLRLDSVLAEL 170 +KPVL+ LGARHILGGVYA+D+Q D+ G +A+E++LRLD +L Sbjct: 121 GMKPVLNSLGARHILGGVYALDTQLEWQDKDAGTFRIAEEIKLRLDKATKDL 172 >B1DKV9.1 B1DKV9_9BACL NADPH-dependent FMN reductase Length = 185 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 96/177 (54%), Positives = 130/177 (73%), Gaps = 4/177 (2%) Query: 1 MAKIVVINGTPSLVSRVNAVIEYAEANLRGRGFEVERINVAELPAEDLIHTKFESEAIVK 60 M+++V+++G+P+ SR+ + +Y E+ L +G I VA LPAEDLIH +F+S AIV+ Sbjct: 2 MSQVVILSGSPNPGSRLAGITQYVESQLSEKGISFNHITVASLPAEDLIHARFDSPAIVE 61 Query: 61 ANGLVAEADAVIVVSPVYKASYTGVLKTFLDLIPEKGLAGKILLPLFMGGSLAHLLTIEY 120 A +V AD VI+ SPVYKAS+TGVLKTFLDL+P+KGL K + PLF+GG++AHLL+I+Y Sbjct: 62 AAAIVEAADVVIIASPVYKASFTGVLKTFLDLLPQKGLTDKFVTPLFIGGTIAHLLSIDY 121 Query: 121 ALKPVLSVLGARHILGGVYAVDSQAVRNDQGA----VELADELRLRLDSVLAELAEE 173 ALKPVLS L A+H GVYA+DSQ R D G EL +EL+ RLD+ +AE+ EE Sbjct: 122 ALKPVLSSLNAKHFGSGVYAIDSQIARIDAGVGESQFELNEELKQRLDASVAEIVEE 178 >Q3MDU8.1 Q3MDU8_ANAVT NADPH-dependent FMN reductase EC=1.5.1.29 Length = 188 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 88/178 (49%), Positives = 125/178 (70%) Query: 1 MAKIVVINGTPSLVSRVNAVIEYAEANLRGRGFEVERINVAELPAEDLIHTKFESEAIVK 60 MA+I+ I G+PS SR ++E+ L+ G V+ ++V +LPAEDL+ K++S A+ + Sbjct: 1 MARILAIAGSPSHPSRTYGILEHTAKLLQEEGLHVDILSVRDLPAEDLVFGKYDSPALEQ 60 Query: 61 ANGLVAEADAVIVVSPVYKASYTGVLKTFLDLIPEKGLAGKILLPLFMGGSLAHLLTIEY 120 L+A+AD VI+ +P+YKA+YTGVLK FLDL+P+K L GK++LP+ GG++AHLL++EY Sbjct: 61 PKDLLAKADGVIIATPIYKAAYTGVLKAFLDLLPQKSLTGKVVLPIATGGTIAHLLSVEY 120 Query: 121 ALKPVLSVLGARHILGGVYAVDSQAVRNDQGAVELADELRLRLDSVLAELAEETSHKA 178 ALKP+L LGARHIL VYAVD Q R G+V+L E+ RL VL +L + H A Sbjct: 121 ALKPILGELGARHILATVYAVDKQIERQTDGSVQLDAEIDQRLKEVLKDLVKSVKHSA 178 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 976,815,521 Number of extensions: 39455516 Number of successful extensions: 124299 Number of sequences better than 1.0e-05: 393 Number of HSP's gapped: 124353 Number of HSP's successfully gapped: 393 Length of query: 184 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 57 Effective length of database: 1,864,227,298 Effective search space: 106260955986 Effective search space used: 106260955986 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)