BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0006.p
         (103 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKE4.1 B3KKE4_9BACI Putative uncharacterized protein                120   3e-26
B1DK69.1 B1DK69_9BACL Putative uncharacterized protein                114   3e-24
A4J0J0.1 Y043_DESRM UPF0133 protein Dred_0043                         100   7e-20
C3J750.1 C3J750_9BACI Putative uncharacterized protein                 95   2e-18
B7YFU4.1 B7YFU4_9BACI Putative uncharacterized protein                 95   2e-18

>B3KKE4.1 B3KKE4_9BACI Putative uncharacterized protein
          Length = 103

 Score =  120 bits (302), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 67/85 (78%)

Query: 19  LKAQEELGSKTIEXXXXXXXXXXXXXXHKKLLSIQIKPEAVDPDDIEMLQDLVITAVNDA 78
           LKAQEEL +KT+E              HK++LSI IKPEAVDPDD+EMLQDLV+TAVNDA
Sbjct: 19  LKAQEELATKTVEGTSGGGVVTVEANGHKQILSINIKPEAVDPDDVEMLQDLVLTAVNDA 78

Query: 79  LTQAEELANNDMGKFTGGMKIPGLF 103
           L +AEE+AN DMGKFTGGMKIPGLF
Sbjct: 79  LAKAEEIANADMGKFTGGMKIPGLF 103


>B1DK69.1 B1DK69_9BACL Putative uncharacterized protein
          Length = 103

 Score =  114 bits (284), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 65/85 (76%)

Query: 19  LKAQEELGSKTIEXXXXXXXXXXXXXXHKKLLSIQIKPEAVDPDDIEMLQDLVITAVNDA 78
           +KAQEEL +KT+E              HKK++SI IKPEAVDPDD+EMLQDLV+TAVND 
Sbjct: 19  MKAQEELVNKTVEGTAGGGVVTVVANGHKKIISIAIKPEAVDPDDVEMLQDLVLTAVNDV 78

Query: 79  LTQAEELANNDMGKFTGGMKIPGLF 103
           L + +E+AN DMGKFTGGMKIPGLF
Sbjct: 79  LAKVDEIANQDMGKFTGGMKIPGLF 103


>A4J0J0.1 Y043_DESRM UPF0133 protein Dred_0043
          Length = 105

 Score = 99.8 bits (247), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 61/84 (72%)

Query: 20  KAQEELGSKTIEXXXXXXXXXXXXXXHKKLLSIQIKPEAVDPDDIEMLQDLVITAVNDAL 79
           K QEELG++T+E               ++++SI IKPEAVDPDD+EMLQDL+ITAVNDAL
Sbjct: 22  KMQEELGNRTVETTAGGGVVKVVASGKQEIISITIKPEAVDPDDVEMLQDLLITAVNDAL 81

Query: 80  TQAEELANNDMGKFTGGMKIPGLF 103
            Q++E+   +MGK TGG+ IPGLF
Sbjct: 82  RQSQEMVAKEMGKLTGGLNIPGLF 105


>C3J750.1 C3J750_9BACI Putative uncharacterized protein
          Length = 108

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 58/84 (69%)

Query: 20  KAQEELGSKTIEXXXXXXXXXXXXXXHKKLLSIQIKPEAVDPDDIEMLQDLVITAVNDAL 79
           KAQEEL  KT+E              HK++L ++IK E VDPDDIEMLQDL++ A NDAL
Sbjct: 25  KAQEELAEKTVEGTAGGGMVTVVANGHKQILEVKIKEEVVDPDDIEMLQDLILAATNDAL 84

Query: 80  TQAEELANNDMGKFTGGMKIPGLF 103
            +A+ELAN  MG+FT G+ IPGLF
Sbjct: 85  KKADELANEMMGQFTKGLNIPGLF 108


>B7YFU4.1 B7YFU4_9BACI Putative uncharacterized protein
          Length = 108

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 58/84 (69%)

Query: 20  KAQEELGSKTIEXXXXXXXXXXXXXXHKKLLSIQIKPEAVDPDDIEMLQDLVITAVNDAL 79
           KAQEEL  KT+E              HK++L ++IK E VDPDDIEMLQDL++ A NDAL
Sbjct: 25  KAQEELAEKTVEGTAGGGMVTVVANGHKQILEVKIKEEVVDPDDIEMLQDLILAATNDAL 84

Query: 80  TQAEELANNDMGKFTGGMKIPGLF 103
            +A+ELAN  MG+FT G+ IPGLF
Sbjct: 85  KKADELANEMMGQFTKGLNIPGLF 108


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.133    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 390,754,761
Number of extensions: 10823058
Number of successful extensions: 21573
Number of sequences better than 1.0e-05: 443
Number of HSP's gapped: 21597
Number of HSP's successfully gapped: 443
Length of query: 103
Length of database: 3,060,696,203
Length adjustment: 71
Effective length of query: 32
Effective length of database: 2,391,804,138
Effective search space: 76537732416
Effective search space used: 76537732416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)