BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0002.p
         (65 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DK72.1 B1DK72_9BACL 50S ribosomal protein L31                       115   1e-24
C0Z832.1 RL31_BREBN 50S ribosomal protein L31                         107   3e-22
B1CBP9.1 B1CBP9_9FIRM 50S ribosomal protein L31                       105   1e-21
B2A3J2.1 RL31_NATTJ 50S ribosomal protein L31                         105   1e-21
C0GGF5.1 C0GGF5_9FIRM 50S ribosomal protein L31                       102   1e-20

>B1DK72.1 B1DK72_9BACL 50S ribosomal protein L31
          Length = 65

 Score =  115 bits (288), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 59/65 (90%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGSVKAELRVEICSSCHPFFTGKQKFMDAGGRVDKFK 60
          M+  I P Y+V+ +TCACGNTFETGS+K+ LRVE+CS+CHPFFTGKQKF+DAGGRVD+FK
Sbjct: 1  MKQGIHPTYHVSNITCACGNTFETGSIKSNLRVEVCSACHPFFTGKQKFLDAGGRVDRFK 60

Query: 61 KKYGI 65
          KKYGI
Sbjct: 61 KKYGI 65


>C0Z832.1 RL31_BREBN 50S ribosomal protein L31
          Length = 65

 Score =  107 bits (268), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 56/65 (86%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGSVKAELRVEICSSCHPFFTGKQKFMDAGGRVDKFK 60
          M+  I PKYNV  V+CACGN FE+GSVK  L+VEICS+CHPFFTGKQKF+DAGGRVD+FK
Sbjct: 1  MKQDIHPKYNVVTVSCACGNEFESGSVKQALKVEICSNCHPFFTGKQKFVDAGGRVDRFK 60

Query: 61 KKYGI 65
          +KY +
Sbjct: 61 RKYNL 65


>B1CBP9.1 B1CBP9_9FIRM 50S ribosomal protein L31
          Length = 69

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 54/65 (83%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGSVKAELRVEICSSCHPFFTGKQKFMDAGGRVDKFK 60
          M+  I PKY   KVTCACGNTFETGSVK E+RVEICS CHPF+TGKQK +D GGRVD+FK
Sbjct: 4  MKEGIHPKYGKCKVTCACGNTFETGSVKDEIRVEICSKCHPFYTGKQKLVDTGGRVDRFK 63

Query: 61 KKYGI 65
          K+Y +
Sbjct: 64 KRYNM 68


>B2A3J2.1 RL31_NATTJ 50S ribosomal protein L31
          Length = 66

 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 55/65 (84%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGSVKAELRVEICSSCHPFFTGKQKFMDAGGRVDKFK 60
          M+  I P+Y   KV CACGN+FETGS K EL+VEICSSCHPFFTGKQK +D+GGRV+KFK
Sbjct: 1  MKREIHPEYKKAKVVCACGNSFETGSTKEELKVEICSSCHPFFTGKQKLVDSGGRVEKFK 60

Query: 61 KKYGI 65
          +KYG+
Sbjct: 61 RKYGL 65


>C0GGF5.1 C0GGF5_9FIRM 50S ribosomal protein L31
          Length = 65

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 55/65 (84%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGSVKAELRVEICSSCHPFFTGKQKFMDAGGRVDKFK 60
          M++ I PKY    V+CACGN+FETGS K EL+++ICS CHPFFTGKQKF+D GGRV++FK
Sbjct: 1  MKAKIHPKYEKATVSCACGNSFETGSTKKELKIDICSKCHPFFTGKQKFIDTGGRVERFK 60

Query: 61 KKYGI 65
          +KYG+
Sbjct: 61 RKYGM 65


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 393,103,636
Number of extensions: 12087660
Number of successful extensions: 19505
Number of sequences better than 1.0e-05: 1034
Number of HSP's gapped: 19114
Number of HSP's successfully gapped: 1034
Length of query: 65
Length of database: 3,060,696,203
Length adjustment: 37
Effective length of query: 28
Effective length of database: 2,712,118,648
Effective search space: 75939322144
Effective search space used: 75939322144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)