BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0014.p
         (97 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D796.1 B1D796_9BACL Putative uncharacterized protein                 83   8e-15
B3K9Y6.1 B3K9Y6_9BACI Putative uncharacterized protein                 78   2e-13

>B1D796.1 B1D796_9BACL Putative uncharacterized protein
          Length = 95

 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 60/79 (75%)

Query: 3  VQNKITKVLQHMAHTHEQMARILDAERHVAVRMSQIVHDLPDVEPDFGGFSGLVESTGQV 62
          +Q  + ++++H++H+H+QMAR++D++RHV VRM+++V  +PD  P+FGG  GL+ +T  +
Sbjct: 1  MQQIVNEIIEHLSHSHQQMARMIDSKRHVVVRMAEVVKAIPDNNPNFGGTDGLLSNTQAL 60

Query: 63 NKNIIAYLNAIADLEEAMA 81
             +++YL  IA+L+E +A
Sbjct: 61 LGGVVSYLTTIAELQETLA 79


>B3K9Y6.1 B3K9Y6_9BACI Putative uncharacterized protein
          Length = 118

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 71/115 (61%), Gaps = 21/115 (18%)

Query: 3   VQNKITKVLQHMAHTHEQMARILDAERHVAVRMSQIVHDLPD------VEPDFGGFSGL- 55
           ++ KI  ++++++H+ +Q+ARIL+A+RH AVRM+QI+H LP+       EP+  G S L 
Sbjct: 1   MEKKIDDMVEYLSHSQQQLARILEAQRHAAVRMAQIIHSLPNHEIQASEEPNSRGGSSLG 60

Query: 56  ----------VESTG----QVNKNIIAYLNAIADLEEAMAEGVGRVIKELNGQEE 96
                       S+G    QVN +I AYLNA+ADL++  A+ +  V+KEL   E+
Sbjct: 61  GPSLGGQLLGGRSSGSQVEQVNSSIAAYLNAMADLQQTSADSLEIVMKELRANEQ 115


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.132    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 534,755,011
Number of extensions: 18958606
Number of successful extensions: 60964
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 60963
Number of HSP's successfully gapped: 2
Length of query: 97
Length of database: 3,060,696,203
Length adjustment: 66
Effective length of query: 31
Effective length of database: 2,438,909,213
Effective search space: 75606185603
Effective search space used: 75606185603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)