BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0005.p (481 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D4Q5.1 B1D4Q5_9BACL Transmembrane protein 368 e-100 C2WBV9.1 C2WBV9_BACCE Putative uncharacterized protein 312 4e-83 C2X2R8.1 C2X2R8_BACCE Putative uncharacterized protein 295 9e-78 C2VGN6.1 C2VGN6_BACCE Putative uncharacterized protein 294 1e-77 C2V096.1 C2V096_BACCE Putative uncharacterized protein 294 1e-77 >B1D4Q5.1 B1D4Q5_9BACL Transmembrane protein Length = 474 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 213/475 (44%), Positives = 285/475 (60%), Gaps = 7/475 (1%) Query: 1 MKRWFKAENLIALAGCGLIIYLLFVQPFVGVADNGDFKRMMNTVGLDYYNAAESYADRFF 60 MK + E L + +++ LLF P VGVA+NGDF RMM G+D+ + ESY D++F Sbjct: 1 MKIRIRLEWLAVIVAAAVLLPLLFFSP-VGVANNGDFYRMMLAGGIDFADPGESYRDKYF 59 Query: 61 SFSHSRFAYGDLFLGFYPSSQIXXXXXXXXXXXXXHGSYFDIRXXXXXXXXXXXXXTWMI 120 + H+ + YG G Y SSQI + FDIR ++I Sbjct: 60 GYFHALYHYGPFSAGSYISSQIILVFIAGMIGRALNSHAFDIRILSLLYSVLYVTALYVI 119 Query: 121 VKLGGSRSYITGLLLGAGMLIVFYDIGYLAYFNSLFGEPVSMVSMLLTFALGLRLAGQER 180 VK RS I +L A + +VF DIGY+AYFNS FGE V+++ MLLTF L L L ++ Sbjct: 120 VKFNKQRSVIFNTVLTASLALVFLDIGYVAYFNSFFGEAVTVIFMLLTFGLALALPRSDK 179 Query: 181 PTTKGLTLFFIAVLFLVCSKIQNAPVGLAFSLIFLRLMTLNGTGNWRKLAMRFAVAVCLV 240 P+ LT F+++ + LV +K+QNAP+GL L+ LR L WR ++ + L Sbjct: 180 PSAWLLTAFYLSAVCLVGTKLQNAPIGLLLLLLGLRYWKLRADRAWRWTVGIWSAVLLLA 239 Query: 241 SVIMYVAAPKELKHINLYQTVFFGILNESPDVRGDLRELGLPEKLEVLAGTNYFQSGTAI 300 +V MY AAP ELKHINLYQTVFFG+L +SPD DLRELGLPE+ +V AGTN+F+ T I Sbjct: 240 TVTMYAAAPSELKHINLYQTVFFGVLKDSPDPAADLRELGLPEEFKVNAGTNFFEKDTVI 299 Query: 301 KQDDPSLQADFYDRVSHKDVLFYYIKHPSRLVDGMKFAARNSMDLRPYYLGNYEKSEGKP 360 KQDDP + + + +SHKDVL YY KHP R + ++ AA+N M +RP YLG+YEK GKP Sbjct: 300 KQDDPRI-LEALEGISHKDVLLYYAKHPDRFLQKLERAAKNGMSIRPLYLGSYEKEAGKP 358 Query: 361 EKALSYAYSTWSQFKREVLPHSLGFLAIFYLLYYAGVLFEY-FRSRDLRGRIAGEXXXXX 419 A+SYAYS WS FK +V+P++ GF+A F Y + EY R R ++ R+ E Sbjct: 359 YGAVSYAYSAWSTFKLKVMPNNFGFVAAFAAAYLVTLALEYRRRRRSVQQRLYMEVLFVL 418 Query: 420 XXXXXXXXXVPIMGDGRADIGKHLFLFNVSFDMMAVVMFGWAVHKLVRLVQSVAG 474 VP++GDG AD+GKHLFLFNV FDMM VV +V +VR++ AG Sbjct: 419 ALAGMVGFTVPLVGDGEADLGKHLFLFNVCFDMMTVV----SVLHVVRMIVKKAG 469 >C2WBV9.1 C2WBV9_BACCE Putative uncharacterized protein Length = 475 Score = 312 bits (800), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 165/464 (35%), Positives = 249/464 (53%), Gaps = 6/464 (1%) Query: 2 KRWFKAENLIALAGCGLIIYLLFVQPFVGVADNGDFKRMMNTVGLDYYNAAESYADRFFS 61 K+W K E + + L+I LL ++P +G+ADNGDF+R+M +GL Y + E+ DR+FS Sbjct: 3 KKWLKWEVIAVIVAAVLMISLLLIKPIIGLADNGDFERIMVQIGLAYPDPNEARIDRYFS 62 Query: 62 FSHSRFAYGDLFLGFYPSSQIXXXXXXXXXXXXXHGSYFDIRXXXXXXXXXXXXXTWMIV 121 F H +AY + G Y SSQ+ G +FDIR ++IV Sbjct: 63 FVHHLYAYVNPASGDYVSSQLILMIPALWIGKILPGPWFDIRVLAVEYIVLFLLALYLIV 122 Query: 122 KLGGSRSYITGLLLGAGMLIVFYDIGYLAYFNSLFGEPVSMVSMLLTFALGLRLAGQERP 181 KL + + + +L A +++VF DIGY+ YFNS++GE V+ V + LT A G++LA Q+ P Sbjct: 123 KLNKTNNRVVNGVLVAIIIVVFADIGYILYFNSMYGEAVTYVFLFLTIAFGIQLARQKHP 182 Query: 182 TTKGLTLFFIAVLFLVCSKIQNAPVGLAFSLIFLRLMTLNGTGNWRKLAMRFAVAVCLVS 241 + + LF+I+++ L CSK Q P G +L+ +RL + WR + + + ++S Sbjct: 183 SVWVVILFYISIIMLACSKTQYTPAGFIAALLTIRLWFMRKDTIWRSIIVSMTALLLILS 242 Query: 242 VIMYVAAPKELKHINLYQTVFFGILNESPDVRGDLRELGLPEKLEVLAGTNYFQSGTAIK 301 I Y ++P + IN+YQTVF+G+L +SP DLR+LG+ KL V AGT +F S I Sbjct: 243 FICYKSSPAWIDKINIYQTVFYGVLKDSPTPEQDLRDLGVDPKLAVNAGT-HFWSNAVIP 301 Query: 302 QDDPSLQADFYDRVSHKDVLFYYIKHPSRLVDGMKFAARNSMDLRPY-----YLGNYEKS 356 Q+DP L + Y ++ D+ +Y+ HP RL ++ A + +RP +LGNYEK Sbjct: 302 QEDPKLYEELYSKIKFPDIAKFYLTHPQRLWSKLEATAEYAWTIRPSVDGIAFLGNYEKQ 361 Query: 357 EGKPEKALSYAYSTWSQFKREVLPHSLGFLAIFYLLYYAGVLFEYFRSRDLRGRIAGEXX 416 E A +S WS K + P ++ + Y+LY G+L EY R+R R+ + Sbjct: 362 ENPTPAAQVETFSLWSHVKEQYHPQGFIWIVLLYILYGLGILLEYRRARTHGERLIPDLL 421 Query: 417 XXXXXXXXXXXXVPIMGDGRADIGKHLFLFNVSFDMMAVVMFGW 460 VP +G G D KHLFLF V D+M V W Sbjct: 422 TAVAVIGMVSYVVPFIGSGEGDFAKHLFLFTVCLDVMLVSGIWW 465 >C2X2R8.1 C2X2R8_BACCE Putative uncharacterized protein Length = 472 Score = 295 bits (754), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 160/463 (34%), Positives = 247/463 (53%), Gaps = 6/463 (1%) Query: 3 RWFKAENLIALAGCGLIIYLLFVQPFVGVADNGDFKRMMNTVGLDYYNAAESYADRFFSF 62 +W K E + + ++I LL ++P VG+ADNGDF+R+M +GL Y + E+ D++FSF Sbjct: 4 KWLKWEVIAVVVAAIVMIGLLLIKPIVGLADNGDFERIMIQIGLAYPDPNEARVDKYFSF 63 Query: 63 SHSRFAYGDLFLGFYPSSQIXXXXXXXXXXXXXHGSYFDIRXXXXXXXXXXXXXTWMIVK 122 H +AY + G Y SSQ+ G +FDIR ++IVK Sbjct: 64 IHHLYAYVNPAAGDYVSSQLFLMVPALWIGKILPGPWFDIRVLAVEYIMIFLLALYLIVK 123 Query: 123 LGGSRSYITGLLLGAGMLIVFYDIGYLAYFNSLFGEPVSMVSMLLTFALGLRLAGQERPT 182 L + + I L ++VF DIGY+ YFNS++GE V+ V + LT ALG++LA Q+ P+ Sbjct: 124 LNKTNNKIVNGFLVTLTIVVFADIGYILYFNSMYGEAVTYVFLFLTIALGIQLARQKHPS 183 Query: 183 TKGLTLFFIAVLFLVCSKIQNAPVGLAFSLIFLRLMTLNGTGNWRKLAMRFAVAVCLVSV 242 + LF+I+ + L CSK Q P G +L+ +RL + WR + + + ++S Sbjct: 184 IWLVILFYISAIMLACSKTQYTPAGFIAALLTIRLWFIRKDTVWRSVIVSMTALLLILSF 243 Query: 243 IMYVAAPKELKHINLYQTVFFGILNESPDVRGDLRELGLPEKLEVLAGTNYFQSGTAIKQ 302 I Y ++P + IN+YQTVF+G+L +SP+ DLR+LG+ +L V AGT +F S AI Q Sbjct: 244 ICYKSSPAWIDKINIYQTVFYGVLKDSPNPEQDLRDLGVDPELAVNAGT-HFWSNAAIPQ 302 Query: 303 DDPSLQADFYDRVSHKDVLFYYIKHPSRLVDGMKFAARNSMDLRPY-----YLGNYEKSE 357 +DP L + Y+++ D+ +Y+ HP R ++ A + +RP +LGNYEK + Sbjct: 303 EDPRLHKELYNKIKFPDIAKFYLTHPQRFWSKLEATAEYAWTIRPSVDGVAFLGNYEKKD 362 Query: 358 GKPEKALSYAYSTWSQFKREVLPHSLGFLAIFYLLYYAGVLFEYFRSRDLRGRIAGEXXX 417 +S WS K + P+ ++ + Y+LY G+L EY R++ R+ + Sbjct: 363 NPVPATQVETFSLWSHVKEQYHPNGFIWIVLLYVLYGLGILLEYRRAKTHSERLIPDIFT 422 Query: 418 XXXXXXXXXXXVPIMGDGRADIGKHLFLFNVSFDMMAVVMFGW 460 VP +G G D KHLFLF V D+M V W Sbjct: 423 AVAIIGMISYVVPFVGSGEGDFAKHLFLFTVCLDVMLVSGIWW 465 >C2VGN6.1 C2VGN6_BACCE Putative uncharacterized protein Length = 472 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 160/463 (34%), Positives = 247/463 (53%), Gaps = 6/463 (1%) Query: 3 RWFKAENLIALAGCGLIIYLLFVQPFVGVADNGDFKRMMNTVGLDYYNAAESYADRFFSF 62 +W K E + + ++I LL ++P VG+ADNGDF+R+M +GL Y + E+ D++FSF Sbjct: 4 KWLKWEVIAVVVAAIVMIGLLLIKPIVGLADNGDFERIMIQIGLAYPDPNEARVDKYFSF 63 Query: 63 SHSRFAYGDLFLGFYPSSQIXXXXXXXXXXXXXHGSYFDIRXXXXXXXXXXXXXTWMIVK 122 H +AY + G Y SSQ+ G +FDIR ++IVK Sbjct: 64 IHHLYAYVNPAAGDYVSSQLFLMVPALWIGKILPGPWFDIRVLAVEYIMIFLLALYLIVK 123 Query: 123 LGGSRSYITGLLLGAGMLIVFYDIGYLAYFNSLFGEPVSMVSMLLTFALGLRLAGQERPT 182 L + + I L ++VF DIGY+ YFNS++GE V+ V + LT ALG++LA Q+ P+ Sbjct: 124 LNKTNNKIVNGFLVTLTIVVFADIGYILYFNSMYGEAVTYVFLFLTIALGIQLARQKHPS 183 Query: 183 TKGLTLFFIAVLFLVCSKIQNAPVGLAFSLIFLRLMTLNGTGNWRKLAMRFAVAVCLVSV 242 + LF+I+ + L CSK Q P G +L+ +RL + WR + + + ++S Sbjct: 184 IWLVILFYISAIMLACSKTQYTPAGFIAALLTIRLWFIRKDKVWRSVIVSMTALLLILSF 243 Query: 243 IMYVAAPKELKHINLYQTVFFGILNESPDVRGDLRELGLPEKLEVLAGTNYFQSGTAIKQ 302 I Y ++P + IN+YQTVF+G+L +SP+ DLR+LG+ +L V AGT +F S AI Q Sbjct: 244 ICYKSSPAWIDKINIYQTVFYGVLKDSPNPEQDLRDLGVDPELAVNAGT-HFWSNAAIPQ 302 Query: 303 DDPSLQADFYDRVSHKDVLFYYIKHPSRLVDGMKFAARNSMDLRPY-----YLGNYEKSE 357 +DP L + Y+++ D+ +Y+ HP R ++ A + +RP +LGNYEK + Sbjct: 303 EDPRLHKELYNKIKFPDIAKFYLTHPQRFWSKLEATAEYAWTIRPSVDGVAFLGNYEKKD 362 Query: 358 GKPEKALSYAYSTWSQFKREVLPHSLGFLAIFYLLYYAGVLFEYFRSRDLRGRIAGEXXX 417 +S WS K + P+ ++ + Y+LY G+L EY R++ R+ + Sbjct: 363 NPVPATQVETFSLWSHVKEQYHPNGFIWIVLLYVLYGLGILLEYRRAKTHSERLIPDIFT 422 Query: 418 XXXXXXXXXXXVPIMGDGRADIGKHLFLFNVSFDMMAVVMFGW 460 VP +G G D KHLFLF V D+M V W Sbjct: 423 AVAIIGMISYVVPFVGSGEGDFAKHLFLFTVCLDVMLVSGIWW 465 >C2V096.1 C2V096_BACCE Putative uncharacterized protein Length = 472 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 160/463 (34%), Positives = 247/463 (53%), Gaps = 6/463 (1%) Query: 3 RWFKAENLIALAGCGLIIYLLFVQPFVGVADNGDFKRMMNTVGLDYYNAAESYADRFFSF 62 +W K E + + ++I LL ++P VG+ADNGDF+R+M +GL Y + E+ D++FSF Sbjct: 4 KWLKWEVIAVVVAAIVMIGLLLIKPIVGLADNGDFERIMIQIGLAYPDPNEARVDKYFSF 63 Query: 63 SHSRFAYGDLFLGFYPSSQIXXXXXXXXXXXXXHGSYFDIRXXXXXXXXXXXXXTWMIVK 122 H +AY + G Y SSQ+ G +FDIR ++IVK Sbjct: 64 IHHLYAYVNPAAGDYVSSQLFLMVPALWIGKILPGPWFDIRVLAVEYIMIFLLALYLIVK 123 Query: 123 LGGSRSYITGLLLGAGMLIVFYDIGYLAYFNSLFGEPVSMVSMLLTFALGLRLAGQERPT 182 L + + I L ++VF DIGY+ YFNS++GE V+ V + LT ALG++LA Q+ P+ Sbjct: 124 LNKTNNKIVNGFLVTLTIVVFADIGYILYFNSMYGEAVTYVFLFLTIALGIQLARQKHPS 183 Query: 183 TKGLTLFFIAVLFLVCSKIQNAPVGLAFSLIFLRLMTLNGTGNWRKLAMRFAVAVCLVSV 242 + LF+I+ + L CSK Q P G +L+ +RL + WR + + + ++S Sbjct: 184 IWLVILFYISAIMLACSKTQYTPAGFIAALLTIRLWFIRKDKVWRSVIVSMTALLLILSF 243 Query: 243 IMYVAAPKELKHINLYQTVFFGILNESPDVRGDLRELGLPEKLEVLAGTNYFQSGTAIKQ 302 I Y ++P + IN+YQTVF+G+L +SP+ DLR+LG+ +L V AGT +F S AI Q Sbjct: 244 ICYKSSPAWIDKINIYQTVFYGVLKDSPNPEQDLRDLGVDPELAVNAGT-HFWSNAAIPQ 302 Query: 303 DDPSLQADFYDRVSHKDVLFYYIKHPSRLVDGMKFAARNSMDLRPY-----YLGNYEKSE 357 +DP L + Y+++ D+ +Y+ HP R ++ A + +RP +LGNYEK + Sbjct: 303 EDPRLHKELYNKIKFPDIAKFYLTHPQRFWSKLEATAEYAWTIRPSVDGVAFLGNYEKKD 362 Query: 358 GKPEKALSYAYSTWSQFKREVLPHSLGFLAIFYLLYYAGVLFEYFRSRDLRGRIAGEXXX 417 +S WS K + P+ ++ + Y+LY G+L EY R++ R+ + Sbjct: 363 NPVPATQVETFSLWSHVKEQYHPNGFIWIVLLYVLYGLGILLEYRRAKTHSERLIPDIFT 422 Query: 418 XXXXXXXXXXXVPIMGDGRADIGKHLFLFNVSFDMMAVVMFGW 460 VP +G G D KHLFLF V D+M V W Sbjct: 423 AVAIIGMISYVVPFVGSGEGDFAKHLFLFTVCLDVMLVSGIWW 465 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.143 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,644,628,919 Number of extensions: 106644918 Number of successful extensions: 282859 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 282730 Number of HSP's successfully gapped: 40 Length of query: 481 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 341 Effective length of database: 1,741,754,103 Effective search space: 593938149123 Effective search space used: 593938149123 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)