BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0003.p (257 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2QXJ7.1 C2QXJ7_BACCE ABC transporter, ATP-binding protein 321 3e-86 Q4MTL5.1 Q4MTL5_BACCE ABC transporter, ATP-binding protein 320 9e-86 A0RI30.1 A0RI30_BACAH ABC transporter, ATP-binding protein 319 2e-85 C2NM80.1 C2NM80_BACCE ABC transporter, ATP-binding protein 319 2e-85 B3Z6Q0.1 B3Z6Q0_BACCE Putative uncharacterized protein 318 2e-85 >C2QXJ7.1 C2QXJ7_BACCE ABC transporter, ATP-binding protein Length = 247 Score = 321 bits (823), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 159/247 (64%), Positives = 188/247 (76%), Gaps = 2/247 (0%) Query: 8 MLYIRNAELLRERVPSFQAYPFDLPVIRSFNRLDFQNRVTFLVGENGTGKSTLLEGIAAA 67 M +++N L +E +PSF AYP+ LP IR+ L F VTF++GENGTGKSTLLE IA A Sbjct: 1 MPFLKNVTLKKENIPSFSAYPYCLPAIRTLQSLAFHPNVTFIIGENGTGKSTLLEAIAIA 60 Query: 68 WGFNPEGGTLNFSFNTRSSHSSLHEYLRLTKGVRRPKDGFFLRAESYYNVASYIDQLDEE 127 GFN EGGT NF F+T SHSSLHEYLR++K P DGFFLRAES+YNVASYID++D + Sbjct: 61 LGFNAEGGTKNFRFSTNDSHSSLHEYLRISKSFNTPNDGFFLRAESFYNVASYIDEMDAD 120 Query: 128 PGEQFQIPMIKDSYGGKSLHEQSHGESFFAAFVHRFGGQGLYILDEPEAALSPLRQMSLL 187 P E P+I DSYGG SLHEQSHGESFF+ F++RF GQGLYILDEPEAALSP+RQ+S+L Sbjct: 121 P-EARGNPVI-DSYGGISLHEQSHGESFFSLFMNRFSGQGLYILDEPEAALSPMRQLSML 178 Query: 188 VRMHELAEQHSQFIIATHSPILMSYPGADIYLLEGEGIRPVPLEETEHYTVTKAFMNDRA 247 +RMHELAEQ SQF+IATHSPILM+YP + IY L EGI LEETEHY TK F +R Sbjct: 179 IRMHELAEQGSQFVIATHSPILMAYPESTIYSLTQEGIHESTLEETEHYQTTKLFFENRD 238 Query: 248 GMLRELL 254 + L Sbjct: 239 RLFHHLF 245 >Q4MTL5.1 Q4MTL5_BACCE ABC transporter, ATP-binding protein Length = 250 Score = 320 bits (819), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 157/245 (64%), Positives = 186/245 (75%), Gaps = 2/245 (0%) Query: 10 YIRNAELLRERVPSFQAYPFDLPVIRSFNRLDFQNRVTFLVGENGTGKSTLLEGIAAAWG 69 +++N L +E +PSF AYP+ LP IR+ L F VTF++GENGTGKSTLLE IA A G Sbjct: 6 FLKNVTLKKENIPSFSAYPYCLPAIRTLQSLAFHPNVTFIIGENGTGKSTLLEAIAIALG 65 Query: 70 FNPEGGTLNFSFNTRSSHSSLHEYLRLTKGVRRPKDGFFLRAESYYNVASYIDQLDEEPG 129 FN EGGT NF F+T SHSSLHEYLR++K P DGFFLRAES+YNVASYID++D +P Sbjct: 66 FNAEGGTKNFRFSTNDSHSSLHEYLRISKSFNTPNDGFFLRAESFYNVASYIDEMDADP- 124 Query: 130 EQFQIPMIKDSYGGKSLHEQSHGESFFAAFVHRFGGQGLYILDEPEAALSPLRQMSLLVR 189 E P+I DSYGG SLH QSHGESFF+ F++RF GQGLYILDEPEAALSP+RQ+S+L+R Sbjct: 125 EARGNPII-DSYGGTSLHSQSHGESFFSLFMNRFSGQGLYILDEPEAALSPMRQLSMLIR 183 Query: 190 MHELAEQHSQFIIATHSPILMSYPGADIYLLEGEGIRPVPLEETEHYTVTKAFMNDRAGM 249 MHELAEQ SQF+IATHSPILM+YP + IY L EGI LEETEHY TK F +R + Sbjct: 184 MHELAEQGSQFVIATHSPILMAYPESTIYSLTQEGIHESTLEETEHYQTTKLFFENRDRL 243 Query: 250 LRELL 254 L Sbjct: 244 FHHLF 248 >A0RI30.1 A0RI30_BACAH ABC transporter, ATP-binding protein Length = 250 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 156/245 (63%), Positives = 186/245 (75%), Gaps = 2/245 (0%) Query: 10 YIRNAELLRERVPSFQAYPFDLPVIRSFNRLDFQNRVTFLVGENGTGKSTLLEGIAAAWG 69 +++N L +E +PSF AYP+ LP IR+ L F VTF++GENGTGKSTLLE IA A G Sbjct: 6 FLKNVTLKKENIPSFSAYPYCLPAIRTLQSLAFHPNVTFIIGENGTGKSTLLEAIAIALG 65 Query: 70 FNPEGGTLNFSFNTRSSHSSLHEYLRLTKGVRRPKDGFFLRAESYYNVASYIDQLDEEPG 129 FN EGGT NF F+T SHSSLHEYLR++K P DGFFLRAES+YNVASYID++D +P Sbjct: 66 FNAEGGTKNFRFSTNDSHSSLHEYLRISKSFNTPSDGFFLRAESFYNVASYIDEMDADPY 125 Query: 130 EQFQIPMIKDSYGGKSLHEQSHGESFFAAFVHRFGGQGLYILDEPEAALSPLRQMSLLVR 189 + P+I DSYGG SLH QSHGESFF+ F++RF GQGLYILDEPEAALSP+RQ+S+L+R Sbjct: 126 ARGN-PVI-DSYGGTSLHNQSHGESFFSLFMNRFSGQGLYILDEPEAALSPMRQLSMLIR 183 Query: 190 MHELAEQHSQFIIATHSPILMSYPGADIYLLEGEGIRPVPLEETEHYTVTKAFMNDRAGM 249 MHELAEQ SQF+IATHSPILM+YP + IY L EGI LEETEHY TK F +R + Sbjct: 184 MHELAEQGSQFVIATHSPILMAYPESTIYSLTQEGIHESTLEETEHYQTTKLFFENRDRL 243 Query: 250 LRELL 254 L Sbjct: 244 FHHLF 248 >C2NM80.1 C2NM80_BACCE ABC transporter, ATP-binding protein Length = 250 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 156/245 (63%), Positives = 186/245 (75%), Gaps = 2/245 (0%) Query: 10 YIRNAELLRERVPSFQAYPFDLPVIRSFNRLDFQNRVTFLVGENGTGKSTLLEGIAAAWG 69 +++N L +E +PSF AYP+ LP IR+ L F VTF++GENGTGKSTLLE IA A G Sbjct: 6 FLKNVTLKKENIPSFSAYPYCLPAIRTLQSLAFHPNVTFIIGENGTGKSTLLEAIAIALG 65 Query: 70 FNPEGGTLNFSFNTRSSHSSLHEYLRLTKGVRRPKDGFFLRAESYYNVASYIDQLDEEPG 129 FN EGGT NF F+T SHSSLHEYLR++K P DGFFLRAES+YNVASYID++D +P Sbjct: 66 FNAEGGTKNFRFSTNDSHSSLHEYLRISKSFNTPSDGFFLRAESFYNVASYIDEMDADPY 125 Query: 130 EQFQIPMIKDSYGGKSLHEQSHGESFFAAFVHRFGGQGLYILDEPEAALSPLRQMSLLVR 189 + P+I DSYGG SLH QSHGESFF+ F++RF GQGLYILDEPEAALSP+RQ+S+L+R Sbjct: 126 ARGN-PVI-DSYGGTSLHNQSHGESFFSLFMNRFSGQGLYILDEPEAALSPMRQLSMLIR 183 Query: 190 MHELAEQHSQFIIATHSPILMSYPGADIYLLEGEGIRPVPLEETEHYTVTKAFMNDRAGM 249 MHELAEQ SQF+IATHSPILM+YP + IY L EGI LEETEHY TK F +R + Sbjct: 184 MHELAEQGSQFVIATHSPILMAYPESTIYSLTQEGIHESTLEETEHYQTTKLFFENRDRL 243 Query: 250 LRELL 254 L Sbjct: 244 FHHLF 248 >B3Z6Q0.1 B3Z6Q0_BACCE Putative uncharacterized protein Length = 250 Score = 318 bits (816), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 158/245 (64%), Positives = 187/245 (76%), Gaps = 2/245 (0%) Query: 10 YIRNAELLRERVPSFQAYPFDLPVIRSFNRLDFQNRVTFLVGENGTGKSTLLEGIAAAWG 69 +++N L +E +PSF AYP+ LP IR+ L F VTF++GENGTGKSTLLEGIA A G Sbjct: 6 FLKNVTLKKENIPSFSAYPYCLPAIRTLQSLAFHPNVTFIIGENGTGKSTLLEGIAIALG 65 Query: 70 FNPEGGTLNFSFNTRSSHSSLHEYLRLTKGVRRPKDGFFLRAESYYNVASYIDQLDEEPG 129 FN EGGT NF F+T SHSSLHEYLR++K P DGFFLRAES+YNVASYID++D + Sbjct: 66 FNAEGGTKNFRFSTNDSHSSLHEYLRISKSFNTPNDGFFLRAESFYNVASYIDEIDADL- 124 Query: 130 EQFQIPMIKDSYGGKSLHEQSHGESFFAAFVHRFGGQGLYILDEPEAALSPLRQMSLLVR 189 E P+I DSYGG SLHEQSHGESFF+ F++RF GQGLYILDEPEAALSP+RQ+S+L+R Sbjct: 125 EARGNPVI-DSYGGISLHEQSHGESFFSLFMNRFSGQGLYILDEPEAALSPMRQLSMLIR 183 Query: 190 MHELAEQHSQFIIATHSPILMSYPGADIYLLEGEGIRPVPLEETEHYTVTKAFMNDRAGM 249 MHELAEQ SQF+IATHSPILM+YP + IY L EGI LEETEHY TK F +R + Sbjct: 184 MHELAEQGSQFVIATHSPILMAYPESTIYSLTQEGIHESTLEETEHYQTTKLFFENRDRL 243 Query: 250 LRELL 254 L Sbjct: 244 FHHLF 248 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,633,106,284 Number of extensions: 72009806 Number of successful extensions: 361142 Number of sequences better than 1.0e-05: 229 Number of HSP's gapped: 360873 Number of HSP's successfully gapped: 229 Length of query: 257 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 124 Effective length of database: 1,807,701,208 Effective search space: 224154949792 Effective search space used: 224154949792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)