BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0002.p (355 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D792.1 B1D792_9BACL Putative uncharacterized protein 336 2e-90 B3KA04.1 B3KA04_9BACI Spore maturation protein 302 3e-80 B9IRD0.1 B9IRD0_BACCQ Spore maturation protein 231 9e-59 B7HWS8.1 B7HWS8_BACC7 Spore maturation protein 231 1e-58 C2S5L5.1 C2S5L5_BACCE Spore maturation protein CgeB 231 1e-58 >B1D792.1 B1D792_9BACL Putative uncharacterized protein Length = 366 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 169/349 (48%), Positives = 226/349 (64%), Gaps = 3/349 (0%) Query: 6 YRDGYQEGYRLGLCEAVRRLNSPEVGACRPLKLMYVPQG---FQAIDAGVTEALGQLVSE 62 Y G+ G+R G CE + + PL+++Y+PQG F AID+G+ +AL + VSE Sbjct: 17 YSAGFHAGWRDGACEWAKTSPLIPIPEAIPLRVLYIPQGSLGFDAIDSGIVQALQRCVSE 76 Query: 63 LVISSPETMLETAARESPGAVLVMNGLHVFPDNHLEQITEIRKLGIPTAIWFVDDPYFTE 122 + + E +L+ AA P VLV+NGL+ FP +HLEQI IR LGI TAIWFVDDPY T Sbjct: 77 VHVGEQEGLLQQAAAIRPDLVLVLNGLYTFPPDHLEQIAAIRALGIKTAIWFVDDPYMTA 136 Query: 123 DTSVICKHYDHVFTHELGCVEFYHDLGVNSVHYLPLCVNPQMFYPRRTGPQYQFDVVFIG 182 T I YD V THE G + Y G VH+LPL VN +F+P R Y+++V FIG Sbjct: 137 HTVQIAPSYDIVLTHERGTIPLYQQQGCLQVHHLPLAVNETVFHPFRADKAYEYEVCFIG 196 Query: 183 NAFRNRTELFDGLAPFLQGKKVLIAGGFWERLSTYEELSPFIKDGFIPPEETANYYSGAK 242 AF NR EL D +A L +K+ IAGG W+RL Y L+ I I PE A+YY+G+K Sbjct: 197 VAFWNRVELIDSIAGQLSKRKLFIAGGQWDRLKQYPLLASNIHQEGIAPEAAAHYYNGSK 256 Query: 243 LVINIHRPWEGGQDNRNSFQLPSRSINPRTYEISACGTMQLTDVREDLGNYYRPGKDLDT 302 +VIN+HR G+DN+ Q P S+NPRTY++SAC T+QLTD+R+DL + YRPG +++T Sbjct: 257 IVINMHRSDVPGKDNQIEAQAPGLSLNPRTYDVSACATLQLTDIRDDLFSQYRPGHEIET 316 Query: 303 FENSDELKFKIDYYLNHEKDRRQIALQGLRTTLRHHTFISRLPHLLNVL 351 + N+ EL KIDYYL HE++R +IA++GL TLR HT R+ LLN+L Sbjct: 317 YGNAQELLQKIDYYLTHEEERSRIAMRGLYRTLRDHTMTKRIATLLNLL 365 >B3KA04.1 B3KA04_9BACI Spore maturation protein Length = 372 Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 159/356 (44%), Positives = 225/356 (63%), Gaps = 14/356 (3%) Query: 6 YRDGY----QEGYRLGLCEAVRRLNSPEVGACRPLKLMYVPQG----FQAIDAGVTEALG 57 YR GY +EGYRLG +AV R E R L+++YV G + A+D VT+AL Sbjct: 19 YRKGYSVGRREGYRLGFSDAVIRSLPKEEEQVRDLRILYVTAGIGVPYPALDQAVTDALK 78 Query: 58 QLVSELVISSP-ETMLETAARESPGAVLVMNGLHVFPDNHLEQITEIRKLGIPTAIWFVD 116 LV L ++SP E ++ A + P VL +NG+ + D + +R G TAIWF D Sbjct: 79 GLVRSLSVASPSEDIVLLAKKFQPDLVLALNGVVLEADT----LKALRDNGFKTAIWFTD 134 Query: 117 DPYFTEDTSVICKHYDHVFTHELGCVEFYHDLGVNSVHYLPLCVNPQMFYPRRTGPQYQF 176 DPY+T+ T I YD++FT E CV FY DLG V++LP VNP +F+P+ Q Sbjct: 135 DPYYTDWTVSIAPRYDYIFTLESNCVSFYRDLGCQHVYHLPFGVNPNVFFPKHVPTSNQT 194 Query: 177 DVVFIGNAFRNRTELFDGLAPFLQGKKVLIAGGFWERLSTYEELSPFIKDG-FIPPEETA 235 D+ FIG A+ NR EL D LAP L+ KKV+I+G +W+R+ Y +LS IK G ++ PE+TA Sbjct: 195 DICFIGTAYWNRVELMDHLAPILKNKKVVISGWWWDRMKHYAQLSDKIKLGDWMTPEDTA 254 Query: 236 NYYSGAKLVINIHRPWEGGQDNRNSFQLPSRSINPRTYEISACGTMQLTDVREDLGNYYR 295 YY+GAK+VIN HR + N NS ++ + S+NPRT+EIS CGT+QL+D+R D+ Y Sbjct: 255 TYYNGAKIVINHHRSSDDDTINANSRKVKALSVNPRTFEISGCGTLQLSDIRHDMDQLYS 314 Query: 296 PGKDLDTFENSDELKFKIDYYLNHEKDRRQIALQGLRTTLRHHTFISRLPHLLNVL 351 PG +++T+ + EL KIDYYL HE++R++IAL+GL T + HT+ RL +L ++ Sbjct: 315 PGTEIETYGSYAELMDKIDYYLRHEEERQRIALKGLMRTRKDHTYHKRLSSMLRII 370 >B9IRD0.1 B9IRD0_BACCQ Spore maturation protein Length = 331 Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 190/329 (57%), Gaps = 22/329 (6%) Query: 35 PLKLMYVPQG----FQAIDAGVTEALGQLVSELVISSPETMLETAARESPGAVLVMNGL- 89 P K++++ G + I+A + +L ++ S+ + SPE ++TA + P +LV++GL Sbjct: 6 PKKILFIQSGIPFYYPMIEAAILNSLQKINSDTSMVSPEKAIKTALKMKPDFILVLSGLS 65 Query: 90 ----HVFPDNHLEQITEIRKLGIPTAIWFVDDPYFTEDTSVICKHYDHVFTHELGCVEFY 145 H+ P ++K G T +W DDPY+T+ T + YD++FT +L C++FY Sbjct: 66 EEFNHIMP--------FLKKAGFTTGLWLTDDPYYTDVTQNVVPFYDYIFTQDLNCIKFY 117 Query: 146 HDLGVNSVHYLPLCVNPQMFYPRRTGPQYQFDVVFIGNAFRNRTELFDGLAPFLQGKKVL 205 +G +V +LPL N +F P Y++D+ FIG AF NR D +A +L GK + Sbjct: 118 TAIGCKNVFHLPLAANQDVFKPSLKEDTYKYDLSFIGTAFENRIHFVDSIAEYLVGKNIK 177 Query: 206 IAGGFWERLSTYEELSPFIKDGFIPP---EETANYYSGAKLVINIHRPWEGGQDNRNSFQ 262 I G WE+L YE L I+ +P E+ ++Y K+ IN+HR + N NS Sbjct: 178 IVGFGWEKLKNYERLKDKIQ--LLPLAKYEDALHFYVSTKININLHRSLIDQELNCNSAN 235 Query: 263 LPSRSINPRTYEISACGTMQLTDVREDLGNYYRPGKDLDTFENSDELKFKIDYYLNHEKD 322 + + S+N RT+EI+A G+ QLTD+R D+ +Y PG +++TF ++ E K +YYL H ++ Sbjct: 236 IQAYSVNNRTFEINAVGSFQLTDIRPDIAKHYIPGVEIETFNSASEFIQKTEYYLEHVQE 295 Query: 323 RRQIALQGLRTTLRHHTFISRLPHLLNVL 351 R++IA GL TL+HHT+ R+ LLN + Sbjct: 296 RKRIAKNGLDRTLKHHTYDKRIIQLLNYI 324 >B7HWS8.1 B7HWS8_BACC7 Spore maturation protein Length = 331 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 190/329 (57%), Gaps = 22/329 (6%) Query: 35 PLKLMYVPQG----FQAIDAGVTEALGQLVSELVISSPETMLETAARESPGAVLVMNGL- 89 P K++++ G + I+A + +L ++ S+ + SPE ++TA + P +LV++GL Sbjct: 6 PKKILFIQSGIPFYYPMIEAAILNSLQKVNSDTSMVSPEKAIKTALKMKPDFILVLSGLS 65 Query: 90 ----HVFPDNHLEQITEIRKLGIPTAIWFVDDPYFTEDTSVICKHYDHVFTHELGCVEFY 145 H+ P ++K G T +W DDPY+T+ T + YD++FT +L C++FY Sbjct: 66 EEFNHIMP--------FLKKAGFTTGLWLTDDPYYTDVTQNVVPFYDYIFTQDLNCIKFY 117 Query: 146 HDLGVNSVHYLPLCVNPQMFYPRRTGPQYQFDVVFIGNAFRNRTELFDGLAPFLQGKKVL 205 +G +V +LPL N +F P Y++D+ FIG AF NR D +A +L GK + Sbjct: 118 TGIGCKNVFHLPLAANQDVFKPSLKEDTYKYDLSFIGTAFENRIHFVDSIAEYLVGKNIK 177 Query: 206 IAGGFWERLSTYEELSPFIKDGFIPP---EETANYYSGAKLVINIHRPWEGGQDNRNSFQ 262 I G WE+L YE L I+ +P E+ ++Y K+ IN+HR + N NS Sbjct: 178 IVGFGWEKLKNYERLKDKIQ--LLPLAKYEDALHFYVSTKININLHRSLIDQELNCNSAN 235 Query: 263 LPSRSINPRTYEISACGTMQLTDVREDLGNYYRPGKDLDTFENSDELKFKIDYYLNHEKD 322 + + S+N RT+EI+A G+ QLTD+R D+ +Y PG +++TF ++ E K +YYL H ++ Sbjct: 236 IQAYSVNNRTFEINAVGSFQLTDIRPDIAKHYIPGVEIETFNSASEFIQKTEYYLEHVQE 295 Query: 323 RRQIALQGLRTTLRHHTFISRLPHLLNVL 351 R++IA GL TL+HHT+ R+ LLN + Sbjct: 296 RKRIAKNGLDRTLKHHTYDKRIIQLLNYI 324 >C2S5L5.1 C2S5L5_BACCE Spore maturation protein CgeB Length = 331 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 190/329 (57%), Gaps = 22/329 (6%) Query: 35 PLKLMYVPQG----FQAIDAGVTEALGQLVSELVISSPETMLETAARESPGAVLVMNGL- 89 P K++++ G + I+A + +L ++ S+ + SPE ++TA + P +LV++GL Sbjct: 6 PKKILFIQSGIPFYYPMIEAAILNSLQKVNSDTSMVSPEKAIKTALKMKPDFILVLSGLS 65 Query: 90 ----HVFPDNHLEQITEIRKLGIPTAIWFVDDPYFTEDTSVICKHYDHVFTHELGCVEFY 145 H+ P ++K G T +W DDPY+T+ T + YD++FT +L C++FY Sbjct: 66 EEFNHIMP--------FLKKAGFTTGLWLTDDPYYTDVTQNVVPFYDYIFTQDLNCIKFY 117 Query: 146 HDLGVNSVHYLPLCVNPQMFYPRRTGPQYQFDVVFIGNAFRNRTELFDGLAPFLQGKKVL 205 +G +V +LPL N +F P Y++D+ FIG AF NR D +A +L GK + Sbjct: 118 TGIGCKNVFHLPLAANQDVFKPSLKEDTYKYDLSFIGTAFENRIHFVDSIAEYLVGKNIK 177 Query: 206 IAGGFWERLSTYEELSPFIKDGFIPP---EETANYYSGAKLVINIHRPWEGGQDNRNSFQ 262 I G WE+L YE L I+ +P E+ ++Y K+ IN+HR + N NS Sbjct: 178 IVGFGWEKLKNYERLKDKIQ--LLPLAKYEDALHFYVSTKININLHRSLIDQELNCNSAN 235 Query: 263 LPSRSINPRTYEISACGTMQLTDVREDLGNYYRPGKDLDTFENSDELKFKIDYYLNHEKD 322 + + S+N RT+EI+A G+ QLTD+R D+ +Y PG +++TF ++ E K +YYL H ++ Sbjct: 236 IQAYSVNNRTFEINAVGSFQLTDIRPDIAKHYIPGVEIETFNSASEFIQKTEYYLEHVQE 295 Query: 323 RRQIALQGLRTTLRHHTFISRLPHLLNVL 351 R++IA GL TL+HHT+ R+ LLN + Sbjct: 296 RKRIAKNGLDRTLKHHTYDKRIIQLLNYI 324 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,287,109,537 Number of extensions: 98376232 Number of successful extensions: 194502 Number of sequences better than 1.0e-05: 121 Number of HSP's gapped: 194358 Number of HSP's successfully gapped: 121 Length of query: 355 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 218 Effective length of database: 1,770,017,148 Effective search space: 385863738264 Effective search space used: 385863738264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)