BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0001.p (377 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA04.1 B3KA04_9BACI Spore maturation protein 338 4e-91 B1D791.1 B1D791_9BACL Putative uncharacterized protein 267 1e-69 B1D792.1 B1D792_9BACL Putative uncharacterized protein 258 5e-67 C3GKY9.1 C3GKY9_BACTU Spore maturation protein CgeB 245 6e-63 C3F3P2.1 C3F3P2_BACTU Spore maturation protein CgeB 245 6e-63 >B3KA04.1 B3KA04_9BACI Spore maturation protein Length = 372 Score = 338 bits (868), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 168/360 (46%), Positives = 227/360 (63%), Gaps = 1/360 (0%) Query: 18 EEEKLRGRLSGFKVGYDEGYLRG-RLAILDGRPEEPLPVRNIHVMYVASGKGYPYSPLDD 76 + +L G G+ VG EGY G A++ P+E VR++ ++YV +G G PY LD Sbjct: 12 QSAQLEGYRKGYSVGRREGYRLGFSDAVIRSLPKEEEQVRDLRILYVTAGIGVPYPALDQ 71 Query: 77 AVLYALQKLTTQVTITDVRQNLVELVGAQRPDLVLVLDGMDLPLDQVAVLRSKGIKTAIW 136 AV AL+ L +++ +++V L +PDLVL L+G+ L D + LR G KTAIW Sbjct: 72 AVTDALKGLVRSLSVASPSEDIVLLAKKFQPDLVLALNGVVLEADTLKALRDNGFKTAIW 131 Query: 137 LTDDPYYTDFTVKIVAHYDYVFTLEQNCVEFYRGLGCPEVHYLPFAAHREHYRPTTGRSP 196 TDDPYYTD+TV I YDY+FTLE NCV FYR LGC V++LPF + + P + Sbjct: 132 FTDDPYYTDWTVSIAPRYDYIFTLESNCVSFYRDLGCQHVYHLPFGVNPNVFFPKHVPTS 191 Query: 197 VSRDISFIGSAYWNRVHFFREIMPELMSYNTIINGIWWDRLPEAPLYGERIEIGKWMTPQ 256 DI FIG+AYWNRV + P L + +I+G WWDR+ ++I++G WMTP+ Sbjct: 192 NQTDICFIGTAYWNRVELMDHLAPILKNKKVVISGWWWDRMKHYAQLSDKIKLGDWMTPE 251 Query: 257 ETAVTYSGSKIVINLHRSHIDEAANNNTLLIPAVSPNPRTFEIAASGTLQLCDARDDMGT 316 +TA Y+G+KIVIN HRS D+ N N+ + A+S NPRTFEI+ GTLQL D R DM Sbjct: 252 DTATYYNGAKIVINHHRSSDDDTINANSRKVKALSVNPRTFEISGCGTLQLSDIRHDMDQ 311 Query: 317 FYTVGEEIDTFTTPREMMDKIRYYLTHEEERRAMALRAFERTLKDHTYTRRLHKLLTIIY 376 Y+ G EI+T+ + E+MDKI YYL HEEER+ +AL+ RT KDHTY +RL +L II+ Sbjct: 312 LYSPGTEIETYGSYAELMDKIDYYLRHEEERQRIALKGLMRTRKDHTYHKRLSSMLRIIF 371 >B1D791.1 B1D791_9BACL Putative uncharacterized protein Length = 276 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 132/271 (48%), Positives = 175/271 (64%), Gaps = 3/271 (1%) Query: 9 APPLPRTPAEEEKLRGRLSGFKVGYDEGYLRGRLAILDGRPEEPLPVRNIHVMYVASGKG 68 AP + R EE GR +G+K+G+D GY G R + + IH MYV +GKG Sbjct: 2 APVVKRKTDEEA---GRAAGYKLGWDHGYWFGLCEEAINRIPQANKLWPIHAMYVETGKG 58 Query: 69 YPYSPLDDAVLYALQKLTTQVTITDVRQNLVELVGAQRPDLVLVLDGMDLPLDQVAVLRS 128 +PYSP+D+AV L + ++T+ + Q + EL A RPD+V+VLDG+ + Q+A LR Sbjct: 59 FPYSPIDEAVRGTLATMVERLTVVNATQPVAELALADRPDVVIVLDGLQFDVAQIAKLRD 118 Query: 129 KGIKTAIWLTDDPYYTDFTVKIVAHYDYVFTLEQNCVEFYRGLGCPEVHYLPFAAHREHY 188 GI+TAIWLTDDPYY D T IV HYD VFTLE+N V++Y+ LGC V YLPF Y Sbjct: 119 NGIRTAIWLTDDPYYMDITTMIVPHYDTVFTLERNSVDYYKQLGCQNVFYLPFCFDPAQY 178 Query: 189 RPTTGRSPVSRDISFIGSAYWNRVHFFREIMPELMSYNTIINGIWWDRLPEAPLYGERIE 248 RPT ++I+FIGSAY NRV++F E+ P L NT+I+GIWWDRL + L +I+ Sbjct: 179 RPTNPERSNRKEITFIGSAYLNRVNYFNELTPYLAGKNTLISGIWWDRLTKYDLLRPKIK 238 Query: 249 IGKWMTPQETAVTYSGSKIVINLHRSHIDEA 279 + WM P ETA+TY+ SKIVIN+HR+H D Sbjct: 239 LNNWMGPTETALTYNASKIVINMHRAHDDAC 269 >B1D792.1 B1D792_9BACL Putative uncharacterized protein Length = 366 Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 139/358 (38%), Positives = 204/358 (56%), Gaps = 8/358 (2%) Query: 23 RGRLSGFKVGYDEGYLRGRLAILDGRPEEPLP-VRNIHVMYVASGKGYPYSPLDDAVLYA 81 +GR G+ G+ G+ G P P+P + V+Y+ G + +D ++ A Sbjct: 11 QGRQQGYSAGFHAGWRDGACEWAKTSPLIPIPEAIPLRVLYIPQGS-LGFDAIDSGIVQA 69 Query: 82 LQKLTTQVTITDVRQNLVELVGAQRPDLVLVLDGM-DLP---LDQVAVLRSKGIKTAIWL 137 LQ+ ++V + + ++ L++ A RPDLVLVL+G+ P L+Q+A +R+ GIKTAIW Sbjct: 70 LQRCVSEVHVGE-QEGLLQQAAAIRPDLVLVLNGLYTFPPDHLEQIAAIRALGIKTAIWF 128 Query: 138 TDDPYYTDFTVKIVAHYDYVFTLEQNCVEFYRGLGCPEVHYLPFAAHREHYRPTTGRSPV 197 DDPY T TV+I YD V T E+ + Y+ GC +VH+LP A + + P Sbjct: 129 VDDPYMTAHTVQIAPSYDIVLTHERGTIPLYQQQGCLQVHHLPLAVNETVFHPFRADKAY 188 Query: 198 SRDISFIGSAYWNRVHFFREIMPELMSYNTIINGIWWDRLPEAPLYGERIEIGKWMTPQE 257 ++ FIG A+WNRV I +L I G WDRL + PL I + + P+ Sbjct: 189 EYEVCFIGVAFWNRVELIDSIAGQLSKRKLFIAGGQWDRLKQYPLLASNIH-QEGIAPEA 247 Query: 258 TAVTYSGSKIVINLHRSHIDEAANNNTLLIPAVSPNPRTFEIAASGTLQLCDARDDMGTF 317 A Y+GSKIVIN+HRS + N P +S NPRT++++A TLQL D RDD+ + Sbjct: 248 AAHYYNGSKIVINMHRSDVPGKDNQIEAQAPGLSLNPRTYDVSACATLQLTDIRDDLFSQ 307 Query: 318 YTVGEEIDTFTTPREMMDKIRYYLTHEEERRAMALRAFERTLKDHTYTRRLHKLLTII 375 Y G EI+T+ +E++ KI YYLTHEEER +A+R RTL+DHT T+R+ LL ++ Sbjct: 308 YRPGHEIETYGNAQELLQKIDYYLTHEEERSRIAMRGLYRTLRDHTMTKRIATLLNLL 365 >C3GKY9.1 C3GKY9_BACTU Spore maturation protein CgeB Length = 343 Score = 245 bits (625), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 126/318 (39%), Positives = 186/318 (58%), Gaps = 2/318 (0%) Query: 60 VMYVASGKGYPYSPLDDAVLYALQKLTTQVTITDVRQNLVELVGAQRPDLVLVLDGMDLP 119 ++++ SG + Y ++ A+L +LQK+ + TI + ++ +PD +LVL G+ Sbjct: 21 ILFIQSGISFYYPMIEAAILNSLQKINSN-TIMVSPEKSIKTALKVKPDFILVLSGLSGE 79 Query: 120 LDQVA-VLRSKGIKTAIWLTDDPYYTDFTVKIVAHYDYVFTLEQNCVEFYRGLGCPEVHY 178 + + L+ G T +WLTDDPYYTD T +V +YDY+FT + NC++FYRG+GC V + Sbjct: 80 FNHIMPFLKEAGFTTGLWLTDDPYYTDVTQHLVPYYDYIFTQDLNCIKFYRGIGCNNVFH 139 Query: 179 LPFAAHREHYRPTTGRSPVSRDISFIGSAYWNRVHFFREIMPELMSYNTIINGIWWDRLP 238 LP AA++E ++P+ D+SFIG+A+ NR++F I L N I G W+ L Sbjct: 140 LPLAANQEVFKPSLKEDTYKYDLSFIGTAFENRINFVDSISEYLAEKNIKIVGFGWENLK 199 Query: 239 EAPLYGERIEIGKWMTPQETAVTYSGSKIVINLHRSHIDEAANNNTLLIPAVSPNPRTFE 298 ++I+I ++ Y +KI INLHRS ID+ N N+ I A S N RTFE Sbjct: 200 SYERLKDKIQILPLAKYEDALQFYVSTKININLHRSLIDQELNCNSANIQAYSVNNRTFE 259 Query: 299 IAASGTLQLCDARDDMGTFYTVGEEIDTFTTPREMMDKIRYYLTHEEERRAMALRAFERT 358 I A G+ QL D R D+ Y G EI+TF + E ++K YYL H EER+ +A +RT Sbjct: 260 INAVGSFQLTDIRPDVAKHYIPGVEIETFNSASEFIEKTEYYLEHAEERKRIAKNGLDRT 319 Query: 359 LKDHTYTRRLHKLLTIIY 376 LK HTY RR+ +LL I+ Sbjct: 320 LKHHTYDRRVLQLLNYIH 337 >C3F3P2.1 C3F3P2_BACTU Spore maturation protein CgeB Length = 343 Score = 245 bits (625), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 126/318 (39%), Positives = 186/318 (58%), Gaps = 2/318 (0%) Query: 60 VMYVASGKGYPYSPLDDAVLYALQKLTTQVTITDVRQNLVELVGAQRPDLVLVLDGMDLP 119 ++++ SG + Y ++ A+L +LQK+ + TI + ++ +PD +LVL G+ Sbjct: 21 ILFIQSGISFYYPMIEAAILNSLQKINSN-TIMVSPEKSIKTALKVKPDFILVLSGLSGE 79 Query: 120 LDQVA-VLRSKGIKTAIWLTDDPYYTDFTVKIVAHYDYVFTLEQNCVEFYRGLGCPEVHY 178 + + L+ G T +WLTDDPYYTD T +V +YDY+FT + NC++FYRG+GC V + Sbjct: 80 FNHIMPFLKEAGFTTGLWLTDDPYYTDVTQHLVPYYDYIFTQDLNCIKFYRGIGCNNVFH 139 Query: 179 LPFAAHREHYRPTTGRSPVSRDISFIGSAYWNRVHFFREIMPELMSYNTIINGIWWDRLP 238 LP AA++E ++P+ D+SFIG+A+ NR++F I L N I G W+ L Sbjct: 140 LPLAANQEVFKPSLKEDTYKYDLSFIGTAFENRINFVDSISEYLAEKNIKIVGFGWENLK 199 Query: 239 EAPLYGERIEIGKWMTPQETAVTYSGSKIVINLHRSHIDEAANNNTLLIPAVSPNPRTFE 298 ++I+I ++ Y +KI INLHRS ID+ N N+ I A S N RTFE Sbjct: 200 SYERLKDKIQILPLAKYEDALQFYVSTKININLHRSLIDQELNCNSANIQAYSVNNRTFE 259 Query: 299 IAASGTLQLCDARDDMGTFYTVGEEIDTFTTPREMMDKIRYYLTHEEERRAMALRAFERT 358 I A G+ QL D R D+ Y G EI+TF + E ++K YYL H EER+ +A +RT Sbjct: 260 INAVGSFQLTDIRPDVAKHYIPGVEIETFNSASEFIEKTEYYLEHAEERKRIAKNGLDRT 319 Query: 359 LKDHTYTRRLHKLLTIIY 376 LK HTY RR+ +LL I+ Sbjct: 320 LKHHTYDRRVLQLLNYIH 337 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,465,818,488 Number of extensions: 110656275 Number of successful extensions: 258776 Number of sequences better than 1.0e-05: 127 Number of HSP's gapped: 258652 Number of HSP's successfully gapped: 127 Length of query: 377 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 240 Effective length of database: 1,770,017,148 Effective search space: 424804115520 Effective search space used: 424804115520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)